Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0853 and Psest_0854 are separated by 18 nucleotides Psest_0854 and Psest_0855 are separated by 70 nucleotides Psest_0855 and Psest_0856 are separated by 12 nucleotides
Psest_0853: Psest_0853 - 6-phosphogluconolactonase, at 923,987 to 924,700
_0853
Psest_0854: Psest_0854 - Entner-Doudoroff aldolase, at 924,719 to 925,456
_0854
Psest_0855: Psest_0855 - NAD-dependent aldehyde dehydrogenases, at 925,527 to 927,155
_0855
Psest_0856: Psest_0856 - Predicted oxidoreductase, at 927,168 to 928,031
_0856
Position (kb) 925
926
927
928 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 924.686 kb on + strand at 924.687 kb on - strand at 924.687 kb on - strand at 924.727 kb on + strand at 924.728 kb on - strand at 925.262 kb on + strand, within Psest_0854 at 925.263 kb on - strand, within Psest_0854 at 925.620 kb on + strand at 925.621 kb on - strand at 925.621 kb on - strand at 925.788 kb on + strand, within Psest_0855 at 925.962 kb on + strand, within Psest_0855 at 925.962 kb on + strand, within Psest_0855 at 925.963 kb on - strand, within Psest_0855 at 925.963 kb on - strand, within Psest_0855 at 926.088 kb on + strand, within Psest_0855 at 926.088 kb on + strand, within Psest_0855 at 926.766 kb on + strand, within Psest_0855 at 926.835 kb on + strand, within Psest_0855 at 926.836 kb on - strand, within Psest_0855 at 926.836 kb on - strand, within Psest_0855 at 926.836 kb on - strand, within Psest_0855 at 926.836 kb on - strand, within Psest_0855 at 926.836 kb on - strand, within Psest_0855 at 926.977 kb on - strand, within Psest_0855 at 927.022 kb on + strand at 927.022 kb on + strand at 927.022 kb on + strand at 927.023 kb on - strand at 927.144 kb on + strand at 927.144 kb on + strand at 927.144 kb on + strand at 927.144 kb on + strand at 927.144 kb on + strand at 927.144 kb on + strand at 927.144 kb on + strand at 927.144 kb on + strand at 927.145 kb on - strand at 927.145 kb on - strand at 927.145 kb on - strand at 927.145 kb on - strand at 927.145 kb on - strand at 927.145 kb on - strand at 927.145 kb on - strand at 927.315 kb on + strand, within Psest_0856 at 927.315 kb on + strand, within Psest_0856 at 927.315 kb on + strand, within Psest_0856 at 927.315 kb on + strand, within Psest_0856 at 927.316 kb on - strand, within Psest_0856 at 927.316 kb on - strand, within Psest_0856 at 927.316 kb on - strand, within Psest_0856 at 927.316 kb on - strand, within Psest_0856 at 927.316 kb on - strand, within Psest_0856 at 927.316 kb on - strand, within Psest_0856 at 927.453 kb on + strand, within Psest_0856 at 927.454 kb on - strand, within Psest_0856 at 927.725 kb on - strand, within Psest_0856 at 927.725 kb on - strand, within Psest_0856 at 927.993 kb on + strand at 927.993 kb on + strand at 927.993 kb on + strand at 927.993 kb on + strand at 928.101 kb on + strand at 928.102 kb on - strand at 928.102 kb on - strand at 928.102 kb on - strand at 928.104 kb on + strand at 928.105 kb on - strand at 928.105 kb on - strand at 928.105 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 924,686 + +0.1 924,687 - +0.1 924,687 - -1.7 924,727 + +0.9 924,728 - -0.5 925,262 + Psest_0854 0.74 -0.8 925,263 - Psest_0854 0.74 +1.9 925,620 + -0.9 925,621 - +0.3 925,621 - -0.6 925,788 + Psest_0855 0.16 -0.8 925,962 + Psest_0855 0.27 -1.9 925,962 + Psest_0855 0.27 -0.1 925,963 - Psest_0855 0.27 +0.1 925,963 - Psest_0855 0.27 +0.9 926,088 + Psest_0855 0.34 +0.5 926,088 + Psest_0855 0.34 +0.1 926,766 + Psest_0855 0.76 +0.1 926,835 + Psest_0855 0.80 -0.5 926,836 - Psest_0855 0.80 -0.8 926,836 - Psest_0855 0.80 -1.5 926,836 - Psest_0855 0.80 -0.4 926,836 - Psest_0855 0.80 -0.8 926,836 - Psest_0855 0.80 +0.9 926,977 - Psest_0855 0.89 -0.8 927,022 + -0.7 927,022 + -0.7 927,022 + -1.2 927,023 - -0.4 927,144 + +0.3 927,144 + -0.9 927,144 + +0.6 927,144 + +0.5 927,144 + -0.6 927,144 + -1.0 927,144 + +1.9 927,144 + -0.3 927,145 - +2.9 927,145 - +0.5 927,145 - -0.3 927,145 - +0.0 927,145 - +0.9 927,145 - +0.9 927,145 - +0.8 927,315 + Psest_0856 0.17 -0.5 927,315 + Psest_0856 0.17 +1.1 927,315 + Psest_0856 0.17 +0.6 927,315 + Psest_0856 0.17 +1.2 927,316 - Psest_0856 0.17 +0.1 927,316 - Psest_0856 0.17 -1.1 927,316 - Psest_0856 0.17 -1.8 927,316 - Psest_0856 0.17 -0.6 927,316 - Psest_0856 0.17 -0.1 927,316 - Psest_0856 0.17 +0.8 927,453 + Psest_0856 0.33 +0.2 927,454 - Psest_0856 0.33 -2.0 927,725 - Psest_0856 0.64 +0.4 927,725 - Psest_0856 0.64 -0.8 927,993 + +0.4 927,993 + +1.8 927,993 + -0.5 927,993 + +0.3 928,101 + +1.1 928,102 - +1.9 928,102 - -1.1 928,102 - -0.7 928,104 + +0.4 928,105 - +1.0 928,105 - -0.0 928,105 - -0.1
Or see this region's nucleotide sequence