Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0802 and Psest_0803 are separated by 70 nucleotides Psest_0803 and Psest_0804 are separated by 8 nucleotides Psest_0804 and Psest_0805 are separated by 23 nucleotides Psest_0805 and Psest_0806 overlap by 4 nucleotides
Psest_0802: Psest_0802 - Transcriptional regulator, at 876,961 to 877,821
_0802
Psest_0803: Psest_0803 - prepilin-type N-terminal cleavage/methylation domain, at 877,892 to 878,419
_0803
Psest_0804: Psest_0804 - hypothetical protein, at 878,428 to 881,445
_0804
Psest_0805: Psest_0805 - hypothetical protein, at 881,469 to 881,942
_0805
Psest_0806: Psest_0806 - prepilin-type N-terminal cleavage/methylation domain, at 881,939 to 883,054
_0806
Position (kb) 878
879
880
881
882 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 877.495 kb on + strand, within Psest_0802 at 877.622 kb on + strand, within Psest_0802 at 877.622 kb on + strand, within Psest_0802 at 877.623 kb on - strand, within Psest_0802 at 877.743 kb on + strand at 877.743 kb on + strand at 877.855 kb on + strand at 877.855 kb on + strand at 877.855 kb on + strand at 877.855 kb on + strand at 877.856 kb on - strand at 877.856 kb on - strand at 877.856 kb on - strand at 877.856 kb on - strand at 877.883 kb on + strand at 877.884 kb on - strand at 877.887 kb on + strand at 877.887 kb on + strand at 877.887 kb on + strand at 877.887 kb on + strand at 877.887 kb on + strand at 877.888 kb on - strand at 877.888 kb on - strand at 878.016 kb on - strand, within Psest_0803 at 878.262 kb on + strand, within Psest_0803 at 878.262 kb on + strand, within Psest_0803 at 878.262 kb on + strand, within Psest_0803 at 878.262 kb on + strand, within Psest_0803 at 878.262 kb on + strand, within Psest_0803 at 878.262 kb on + strand, within Psest_0803 at 878.262 kb on + strand, within Psest_0803 at 878.263 kb on - strand, within Psest_0803 at 878.263 kb on - strand, within Psest_0803 at 878.263 kb on - strand, within Psest_0803 at 878.263 kb on - strand, within Psest_0803 at 878.298 kb on + strand, within Psest_0803 at 878.393 kb on + strand at 878.393 kb on + strand at 878.429 kb on + strand at 878.430 kb on - strand at 878.430 kb on - strand at 878.430 kb on - strand at 878.484 kb on + strand at 878.484 kb on + strand at 878.484 kb on + strand at 878.484 kb on + strand at 878.485 kb on - strand at 878.619 kb on - strand at 878.635 kb on + strand at 878.639 kb on + strand at 878.639 kb on + strand at 878.639 kb on + strand at 878.640 kb on - strand at 878.640 kb on - strand at 878.640 kb on - strand at 878.640 kb on - strand at 878.640 kb on - strand at 878.640 kb on - strand at 878.640 kb on - strand at 878.640 kb on - strand at 878.650 kb on - strand at 878.651 kb on + strand at 878.651 kb on + strand at 878.651 kb on + strand at 878.652 kb on - strand at 878.652 kb on - strand at 878.652 kb on - strand at 878.652 kb on - strand at 878.652 kb on - strand at 878.784 kb on - strand, within Psest_0804 at 878.784 kb on - strand, within Psest_0804 at 878.784 kb on - strand, within Psest_0804 at 878.784 kb on - strand, within Psest_0804 at 878.939 kb on + strand, within Psest_0804 at 878.939 kb on + strand, within Psest_0804 at 878.939 kb on + strand, within Psest_0804 at 878.939 kb on + strand, within Psest_0804 at 878.940 kb on - strand, within Psest_0804 at 878.940 kb on - strand, within Psest_0804 at 878.940 kb on - strand, within Psest_0804 at 878.967 kb on - strand, within Psest_0804 at 879.014 kb on + strand, within Psest_0804 at 879.015 kb on - strand, within Psest_0804 at 879.015 kb on - strand, within Psest_0804 at 879.124 kb on + strand, within Psest_0804 at 879.182 kb on + strand, within Psest_0804 at 879.294 kb on - strand, within Psest_0804 at 879.563 kb on + strand, within Psest_0804 at 879.563 kb on + strand, within Psest_0804 at 879.563 kb on + strand, within Psest_0804 at 879.563 kb on + strand, within Psest_0804 at 879.563 kb on + strand, within Psest_0804 at 879.596 kb on + strand, within Psest_0804 at 879.596 kb on + strand, within Psest_0804 at 879.597 kb on - strand, within Psest_0804 at 879.683 kb on + strand, within Psest_0804 at 879.845 kb on + strand, within Psest_0804 at 879.881 kb on + strand, within Psest_0804 at 880.113 kb on + strand, within Psest_0804 at 880.114 kb on - strand, within Psest_0804 at 880.114 kb on - strand, within Psest_0804 at 880.135 kb on + strand, within Psest_0804 at 880.136 kb on - strand, within Psest_0804 at 880.136 kb on - strand, within Psest_0804 at 880.168 kb on - strand, within Psest_0804 at 880.241 kb on + strand, within Psest_0804 at 880.242 kb on - strand, within Psest_0804 at 880.242 kb on - strand, within Psest_0804 at 880.370 kb on + strand, within Psest_0804 at 880.370 kb on + strand, within Psest_0804 at 880.370 kb on + strand, within Psest_0804 at 880.371 kb on - strand, within Psest_0804 at 880.371 kb on - strand, within Psest_0804 at 880.371 kb on - strand, within Psest_0804 at 880.388 kb on + strand, within Psest_0804 at 880.444 kb on + strand, within Psest_0804 at 880.445 kb on - strand, within Psest_0804 at 880.445 kb on - strand, within Psest_0804 at 880.445 kb on - strand, within Psest_0804 at 880.445 kb on - strand, within Psest_0804 at 880.448 kb on + strand, within Psest_0804 at 880.448 kb on + strand, within Psest_0804 at 880.449 kb on - strand, within Psest_0804 at 880.577 kb on + strand, within Psest_0804 at 880.578 kb on - strand, within Psest_0804 at 880.578 kb on - strand, within Psest_0804 at 880.578 kb on - strand, within Psest_0804 at 880.667 kb on + strand, within Psest_0804 at 880.667 kb on + strand, within Psest_0804 at 880.667 kb on + strand, within Psest_0804 at 880.667 kb on + strand, within Psest_0804 at 880.667 kb on + strand, within Psest_0804 at 880.667 kb on + strand, within Psest_0804 at 880.667 kb on + strand, within Psest_0804 at 880.667 kb on + strand, within Psest_0804 at 880.667 kb on + strand, within Psest_0804 at 880.667 kb on + strand, within Psest_0804 at 880.668 kb on - strand, within Psest_0804 at 880.668 kb on - strand, within Psest_0804 at 880.668 kb on - strand, within Psest_0804 at 880.668 kb on - strand, within Psest_0804 at 880.668 kb on - strand, within Psest_0804 at 880.668 kb on - strand, within Psest_0804 at 880.668 kb on - strand, within Psest_0804 at 880.668 kb on - strand, within Psest_0804 at 880.668 kb on - strand, within Psest_0804 at 880.668 kb on - strand, within Psest_0804 at 880.668 kb on - strand, within Psest_0804 at 880.755 kb on + strand, within Psest_0804 at 880.755 kb on + strand, within Psest_0804 at 880.755 kb on + strand, within Psest_0804 at 880.844 kb on + strand, within Psest_0804 at 880.844 kb on + strand, within Psest_0804 at 880.844 kb on + strand, within Psest_0804 at 880.844 kb on + strand, within Psest_0804 at 880.844 kb on + strand, within Psest_0804 at 880.844 kb on + strand, within Psest_0804 at 880.844 kb on + strand, within Psest_0804 at 880.844 kb on + strand, within Psest_0804 at 880.844 kb on + strand, within Psest_0804 at 880.844 kb on + strand, within Psest_0804 at 880.844 kb on + strand, within Psest_0804 at 880.844 kb on + strand, within Psest_0804 at 880.844 kb on + strand, within Psest_0804 at 880.844 kb on + strand, within Psest_0804 at 880.844 kb on + strand, within Psest_0804 at 880.845 kb on - strand, within Psest_0804 at 880.845 kb on - strand, within Psest_0804 at 880.845 kb on - strand, within Psest_0804 at 880.845 kb on - strand, within Psest_0804 at 880.853 kb on + strand, within Psest_0804 at 880.853 kb on + strand, within Psest_0804 at 880.853 kb on + strand, within Psest_0804 at 880.853 kb on + strand, within Psest_0804 at 880.853 kb on + strand, within Psest_0804 at 880.853 kb on + strand, within Psest_0804 at 880.853 kb on + strand, within Psest_0804 at 880.853 kb on + strand, within Psest_0804 at 880.854 kb on - strand, within Psest_0804 at 880.854 kb on - strand, within Psest_0804 at 880.854 kb on - strand, within Psest_0804 at 880.854 kb on - strand, within Psest_0804 at 880.854 kb on - strand, within Psest_0804 at 880.889 kb on + strand, within Psest_0804 at 880.889 kb on + strand, within Psest_0804 at 880.889 kb on + strand, within Psest_0804 at 880.890 kb on - strand, within Psest_0804 at 880.890 kb on - strand, within Psest_0804 at 880.934 kb on + strand, within Psest_0804 at 880.934 kb on + strand, within Psest_0804 at 880.934 kb on + strand, within Psest_0804 at 880.934 kb on + strand, within Psest_0804 at 880.935 kb on - strand, within Psest_0804 at 880.935 kb on - strand, within Psest_0804 at 880.935 kb on - strand, within Psest_0804 at 880.935 kb on - strand, within Psest_0804 at 880.935 kb on - strand, within Psest_0804 at 881.027 kb on + strand, within Psest_0804 at 881.027 kb on + strand, within Psest_0804 at 881.027 kb on + strand, within Psest_0804 at 881.027 kb on + strand, within Psest_0804 at 881.033 kb on + strand, within Psest_0804 at 881.033 kb on + strand, within Psest_0804 at 881.033 kb on + strand, within Psest_0804 at 881.033 kb on + strand, within Psest_0804 at 881.162 kb on + strand at 881.162 kb on + strand at 881.162 kb on + strand at 881.163 kb on - strand at 881.163 kb on - strand at 881.203 kb on - strand at 881.304 kb on + strand at 881.305 kb on - strand at 881.305 kb on - strand at 881.451 kb on + strand at 881.451 kb on + strand at 881.624 kb on + strand, within Psest_0805 at 881.682 kb on + strand, within Psest_0805 at 881.689 kb on + strand, within Psest_0805 at 881.689 kb on + strand, within Psest_0805 at 881.689 kb on + strand, within Psest_0805 at 881.689 kb on + strand, within Psest_0805 at 881.991 kb on + strand at 881.992 kb on - strand at 881.992 kb on - strand at 882.048 kb on + strand at 882.048 kb on + strand at 882.048 kb on + strand at 882.048 kb on + strand at 882.048 kb on + strand at 882.049 kb on - strand at 882.049 kb on - strand at 882.049 kb on - strand at 882.049 kb on - strand at 882.244 kb on - strand, within Psest_0806 at 882.308 kb on - strand, within Psest_0806 at 882.308 kb on - strand, within Psest_0806 at 882.423 kb on + strand, within Psest_0806 at 882.423 kb on + strand, within Psest_0806 at 882.423 kb on + strand, within Psest_0806 at 882.423 kb on + strand, within Psest_0806 at 882.423 kb on + strand, within Psest_0806 at 882.423 kb on + strand, within Psest_0806 at 882.423 kb on + strand, within Psest_0806 at 882.424 kb on - strand, within Psest_0806 at 882.424 kb on - strand, within Psest_0806 at 882.424 kb on - strand, within Psest_0806 at 882.424 kb on - strand, within Psest_0806 at 882.424 kb on - strand, within Psest_0806 at 882.426 kb on + strand, within Psest_0806 at 882.426 kb on + strand, within Psest_0806
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 877,495 + Psest_0802 0.62 +0.5 877,622 + Psest_0802 0.77 -0.1 877,622 + Psest_0802 0.77 +0.9 877,623 - Psest_0802 0.77 -0.4 877,743 + -0.3 877,743 + +0.4 877,855 + +0.7 877,855 + +0.2 877,855 + +0.8 877,855 + +0.0 877,856 - +1.1 877,856 - +0.2 877,856 - -0.8 877,856 - -0.2 877,883 + +0.3 877,884 - -1.3 877,887 + +0.4 877,887 + +0.6 877,887 + +0.7 877,887 + +1.0 877,887 + +0.3 877,888 - -1.3 877,888 - -2.7 878,016 - Psest_0803 0.23 -3.4 878,262 + Psest_0803 0.70 -2.4 878,262 + Psest_0803 0.70 +0.3 878,262 + Psest_0803 0.70 +0.3 878,262 + Psest_0803 0.70 +0.2 878,262 + Psest_0803 0.70 +1.2 878,262 + Psest_0803 0.70 +0.5 878,262 + Psest_0803 0.70 +0.4 878,263 - Psest_0803 0.70 -1.1 878,263 - Psest_0803 0.70 -0.1 878,263 - Psest_0803 0.70 +0.2 878,263 - Psest_0803 0.70 -1.4 878,298 + Psest_0803 0.77 +0.9 878,393 + -2.2 878,393 + +0.4 878,429 + +0.4 878,430 - +0.9 878,430 - +0.2 878,430 - +1.2 878,484 + -0.0 878,484 + -1.1 878,484 + +0.5 878,484 + -1.8 878,485 - +0.4 878,619 - +1.4 878,635 + -1.2 878,639 + +0.3 878,639 + +1.0 878,639 + +0.1 878,640 - +0.1 878,640 - +1.3 878,640 - -0.7 878,640 - +0.5 878,640 - +1.4 878,640 - -0.0 878,640 - +0.6 878,640 - +0.8 878,650 - -0.9 878,651 + -1.6 878,651 + +0.8 878,651 + -0.7 878,652 - -1.0 878,652 - -1.9 878,652 - -0.5 878,652 - +0.7 878,652 - +0.7 878,784 - Psest_0804 0.12 -1.3 878,784 - Psest_0804 0.12 -2.0 878,784 - Psest_0804 0.12 -2.7 878,784 - Psest_0804 0.12 -1.5 878,939 + Psest_0804 0.17 +0.3 878,939 + Psest_0804 0.17 +0.1 878,939 + Psest_0804 0.17 -0.7 878,939 + Psest_0804 0.17 +0.1 878,940 - Psest_0804 0.17 -0.5 878,940 - Psest_0804 0.17 -0.6 878,940 - Psest_0804 0.17 -2.0 878,967 - Psest_0804 0.18 +0.1 879,014 + Psest_0804 0.19 -0.5 879,015 - Psest_0804 0.19 -2.1 879,015 - Psest_0804 0.19 -0.8 879,124 + Psest_0804 0.23 +0.7 879,182 + Psest_0804 0.25 -1.0 879,294 - Psest_0804 0.29 -1.0 879,563 + Psest_0804 0.38 +0.3 879,563 + Psest_0804 0.38 -0.1 879,563 + Psest_0804 0.38 -0.4 879,563 + Psest_0804 0.38 -1.9 879,563 + Psest_0804 0.38 +0.2 879,596 + Psest_0804 0.39 +0.1 879,596 + Psest_0804 0.39 +0.5 879,597 - Psest_0804 0.39 -2.0 879,683 + Psest_0804 0.42 -0.1 879,845 + Psest_0804 0.47 -1.5 879,881 + Psest_0804 0.48 -1.2 880,113 + Psest_0804 0.56 +0.3 880,114 - Psest_0804 0.56 -1.1 880,114 - Psest_0804 0.56 +0.2 880,135 + Psest_0804 0.57 +0.9 880,136 - Psest_0804 0.57 -0.6 880,136 - Psest_0804 0.57 +0.1 880,168 - Psest_0804 0.58 -0.9 880,241 + Psest_0804 0.60 -0.8 880,242 - Psest_0804 0.60 +0.1 880,242 - Psest_0804 0.60 +0.1 880,370 + Psest_0804 0.64 +0.3 880,370 + Psest_0804 0.64 +1.1 880,370 + Psest_0804 0.64 -0.0 880,371 - Psest_0804 0.64 +0.8 880,371 - Psest_0804 0.64 -0.7 880,371 - Psest_0804 0.64 -0.5 880,388 + Psest_0804 0.65 +0.9 880,444 + Psest_0804 0.67 -0.2 880,445 - Psest_0804 0.67 -2.0 880,445 - Psest_0804 0.67 -0.5 880,445 - Psest_0804 0.67 -0.6 880,445 - Psest_0804 0.67 -1.7 880,448 + Psest_0804 0.67 -0.7 880,448 + Psest_0804 0.67 +0.1 880,449 - Psest_0804 0.67 +0.9 880,577 + Psest_0804 0.71 +0.1 880,578 - Psest_0804 0.71 +1.8 880,578 - Psest_0804 0.71 +0.1 880,578 - Psest_0804 0.71 -1.8 880,667 + Psest_0804 0.74 -0.1 880,667 + Psest_0804 0.74 -0.4 880,667 + Psest_0804 0.74 -0.3 880,667 + Psest_0804 0.74 -0.8 880,667 + Psest_0804 0.74 +0.7 880,667 + Psest_0804 0.74 +1.5 880,667 + Psest_0804 0.74 -2.4 880,667 + Psest_0804 0.74 -0.9 880,667 + Psest_0804 0.74 +0.9 880,667 + Psest_0804 0.74 -0.1 880,668 - Psest_0804 0.74 -1.8 880,668 - Psest_0804 0.74 -2.3 880,668 - Psest_0804 0.74 -0.8 880,668 - Psest_0804 0.74 -0.3 880,668 - Psest_0804 0.74 -2.0 880,668 - Psest_0804 0.74 -0.5 880,668 - Psest_0804 0.74 +1.7 880,668 - Psest_0804 0.74 +0.7 880,668 - Psest_0804 0.74 -1.0 880,668 - Psest_0804 0.74 -0.3 880,668 - Psest_0804 0.74 -1.0 880,755 + Psest_0804 0.77 -0.7 880,755 + Psest_0804 0.77 +1.4 880,755 + Psest_0804 0.77 -0.3 880,844 + Psest_0804 0.80 +0.2 880,844 + Psest_0804 0.80 -1.6 880,844 + Psest_0804 0.80 -1.1 880,844 + Psest_0804 0.80 -0.5 880,844 + Psest_0804 0.80 +0.4 880,844 + Psest_0804 0.80 -1.2 880,844 + Psest_0804 0.80 +0.7 880,844 + Psest_0804 0.80 -0.9 880,844 + Psest_0804 0.80 -1.7 880,844 + Psest_0804 0.80 -0.3 880,844 + Psest_0804 0.80 -2.1 880,844 + Psest_0804 0.80 -0.1 880,844 + Psest_0804 0.80 +1.4 880,844 + Psest_0804 0.80 -1.3 880,844 + Psest_0804 0.80 +0.1 880,845 - Psest_0804 0.80 -1.7 880,845 - Psest_0804 0.80 -0.4 880,845 - Psest_0804 0.80 -2.4 880,845 - Psest_0804 0.80 -1.9 880,853 + Psest_0804 0.80 +2.0 880,853 + Psest_0804 0.80 -1.2 880,853 + Psest_0804 0.80 -2.1 880,853 + Psest_0804 0.80 +0.8 880,853 + Psest_0804 0.80 +1.0 880,853 + Psest_0804 0.80 -1.4 880,853 + Psest_0804 0.80 -0.9 880,853 + Psest_0804 0.80 +0.3 880,854 - Psest_0804 0.80 -2.4 880,854 - Psest_0804 0.80 -1.7 880,854 - Psest_0804 0.80 -2.9 880,854 - Psest_0804 0.80 +0.5 880,854 - Psest_0804 0.80 +0.1 880,889 + Psest_0804 0.82 +0.5 880,889 + Psest_0804 0.82 +0.1 880,889 + Psest_0804 0.82 -0.7 880,890 - Psest_0804 0.82 -2.5 880,890 - Psest_0804 0.82 -0.1 880,934 + Psest_0804 0.83 -0.7 880,934 + Psest_0804 0.83 -0.9 880,934 + Psest_0804 0.83 -0.8 880,934 + Psest_0804 0.83 -1.2 880,935 - Psest_0804 0.83 -2.2 880,935 - Psest_0804 0.83 -0.7 880,935 - Psest_0804 0.83 -0.5 880,935 - Psest_0804 0.83 -1.1 880,935 - Psest_0804 0.83 -1.3 881,027 + Psest_0804 0.86 +0.7 881,027 + Psest_0804 0.86 -0.3 881,027 + Psest_0804 0.86 -1.9 881,027 + Psest_0804 0.86 -0.5 881,033 + Psest_0804 0.86 -1.6 881,033 + Psest_0804 0.86 -0.2 881,033 + Psest_0804 0.86 -1.8 881,033 + Psest_0804 0.86 +1.5 881,162 + -0.2 881,162 + -2.3 881,162 + -0.3 881,163 - -0.5 881,163 - +0.2 881,203 - -1.7 881,304 + +0.4 881,305 - -0.5 881,305 - -0.4 881,451 + +1.1 881,451 + +0.4 881,624 + Psest_0805 0.33 +0.3 881,682 + Psest_0805 0.45 +0.2 881,689 + Psest_0805 0.46 -0.7 881,689 + Psest_0805 0.46 +1.4 881,689 + Psest_0805 0.46 +0.0 881,689 + Psest_0805 0.46 +0.8 881,991 + -1.0 881,992 - +2.1 881,992 - -0.4 882,048 + -0.1 882,048 + -0.6 882,048 + -1.2 882,048 + -0.0 882,048 + -0.4 882,049 - -1.3 882,049 - +0.7 882,049 - -0.9 882,049 - -1.7 882,244 - Psest_0806 0.27 -1.2 882,308 - Psest_0806 0.33 -0.7 882,308 - Psest_0806 0.33 +0.5 882,423 + Psest_0806 0.43 -1.6 882,423 + Psest_0806 0.43 +0.9 882,423 + Psest_0806 0.43 +0.0 882,423 + Psest_0806 0.43 +1.1 882,423 + Psest_0806 0.43 +1.4 882,423 + Psest_0806 0.43 +0.0 882,423 + Psest_0806 0.43 +1.5 882,424 - Psest_0806 0.43 -0.8 882,424 - Psest_0806 0.43 -0.0 882,424 - Psest_0806 0.43 -1.6 882,424 - Psest_0806 0.43 -2.5 882,424 - Psest_0806 0.43 -0.9 882,426 + Psest_0806 0.44 -0.1 882,426 + Psest_0806 0.44 +0.4
Or see this region's nucleotide sequence