Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0771

Experiment: Def Carbenicillin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0769 and Psest_0770 are separated by 47 nucleotidesPsest_0770 and Psest_0771 are separated by 118 nucleotidesPsest_0771 and Psest_0772 are separated by 339 nucleotides Psest_0769: Psest_0769 - Predicted membrane protein, at 838,603 to 839,331 _0769 Psest_0770: Psest_0770 - alkylphosphonate utilization operon protein PhnA, at 839,379 to 839,723 _0770 Psest_0771: Psest_0771 - Acyl-CoA hydrolase, at 839,842 to 840,345 _0771 Psest_0772: Psest_0772 - Cytochrome c553, at 840,685 to 841,371 _0772 Position (kb) 839 840 841Strain fitness (log2 ratio) -2 -1 0 1 2 3at 839.041 kb on + strand, within Psest_0769at 839.041 kb on + strand, within Psest_0769at 839.041 kb on + strand, within Psest_0769at 839.042 kb on - strand, within Psest_0769at 839.042 kb on - strand, within Psest_0769at 839.074 kb on + strand, within Psest_0769at 839.075 kb on - strand, within Psest_0769at 839.215 kb on + strand, within Psest_0769at 839.215 kb on + strand, within Psest_0769at 839.292 kb on + strandat 839.677 kb on + strand, within Psest_0770at 839.677 kb on + strand, within Psest_0770at 839.677 kb on + strand, within Psest_0770at 839.678 kb on - strand, within Psest_0770at 839.678 kb on - strand, within Psest_0770at 839.678 kb on - strand, within Psest_0770at 839.678 kb on - strand, within Psest_0770at 839.678 kb on - strand, within Psest_0770at 839.683 kb on + strand, within Psest_0770at 839.684 kb on - strand, within Psest_0770at 839.684 kb on - strand, within Psest_0770at 839.765 kb on + strandat 839.765 kb on + strandat 839.766 kb on - strandat 839.766 kb on - strandat 839.766 kb on - strandat 839.766 kb on - strandat 839.766 kb on - strandat 839.837 kb on - strandat 839.837 kb on - strandat 839.843 kb on + strandat 839.843 kb on + strandat 839.843 kb on + strandat 839.844 kb on - strandat 839.844 kb on - strandat 839.844 kb on - strandat 839.889 kb on - strandat 839.928 kb on - strand, within Psest_0771at 840.113 kb on + strand, within Psest_0771at 840.113 kb on + strand, within Psest_0771at 840.113 kb on + strand, within Psest_0771at 840.113 kb on + strand, within Psest_0771at 840.114 kb on - strand, within Psest_0771at 840.114 kb on - strand, within Psest_0771at 840.114 kb on - strand, within Psest_0771at 840.114 kb on - strand, within Psest_0771at 840.200 kb on + strand, within Psest_0771at 840.200 kb on + strand, within Psest_0771at 840.200 kb on + strand, within Psest_0771at 840.200 kb on + strand, within Psest_0771at 840.200 kb on + strand, within Psest_0771at 840.200 kb on + strand, within Psest_0771at 840.200 kb on + strand, within Psest_0771at 840.200 kb on + strand, within Psest_0771at 840.201 kb on - strand, within Psest_0771at 840.230 kb on + strand, within Psest_0771at 840.231 kb on - strand, within Psest_0771at 840.248 kb on + strand, within Psest_0771at 840.248 kb on + strand, within Psest_0771at 840.248 kb on + strand, within Psest_0771at 840.249 kb on - strand, within Psest_0771at 840.249 kb on - strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.340 kb on + strandat 840.340 kb on + strandat 840.340 kb on + strandat 840.340 kb on + strandat 840.340 kb on + strandat 840.340 kb on + strandat 840.340 kb on + strandat 840.340 kb on + strandat 840.340 kb on + strandat 840.340 kb on + strandat 840.341 kb on - strandat 840.341 kb on - strandat 840.341 kb on - strandat 840.341 kb on - strandat 840.341 kb on - strandat 840.341 kb on - strandat 840.341 kb on - strandat 840.379 kb on + strandat 840.379 kb on + strandat 840.380 kb on - strandat 840.380 kb on - strandat 840.380 kb on - strandat 840.384 kb on + strandat 840.385 kb on - strandat 840.385 kb on - strandat 840.487 kb on + strandat 840.509 kb on + strandat 840.509 kb on + strandat 840.509 kb on + strandat 840.510 kb on - strandat 840.510 kb on - strandat 840.631 kb on + strandat 840.631 kb on + strandat 840.631 kb on + strandat 840.766 kb on + strand, within Psest_0772at 840.767 kb on - strand, within Psest_0772at 840.767 kb on - strand, within Psest_0772at 840.838 kb on + strand, within Psest_0772at 840.908 kb on - strand, within Psest_0772at 841.015 kb on + strand, within Psest_0772at 841.016 kb on - strand, within Psest_0772at 841.016 kb on - strand, within Psest_0772at 841.174 kb on + strand, within Psest_0772at 841.175 kb on - strand, within Psest_0772at 841.289 kb on - strand, within Psest_0772at 841.289 kb on - strand, within Psest_0772

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml
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839,041 + Psest_0769 0.60 -0.5
839,041 + Psest_0769 0.60 -0.2
839,041 + Psest_0769 0.60 +0.8
839,042 - Psest_0769 0.60 +0.8
839,042 - Psest_0769 0.60 +1.2
839,074 + Psest_0769 0.65 +1.8
839,075 - Psest_0769 0.65 +0.1
839,215 + Psest_0769 0.84 +2.4
839,215 + Psest_0769 0.84 -1.1
839,292 + +2.0
839,677 + Psest_0770 0.86 -2.0
839,677 + Psest_0770 0.86 -2.1
839,677 + Psest_0770 0.86 -0.4
839,678 - Psest_0770 0.87 +2.3
839,678 - Psest_0770 0.87 +0.8
839,678 - Psest_0770 0.87 +1.5
839,678 - Psest_0770 0.87 +0.6
839,678 - Psest_0770 0.87 +2.0
839,683 + Psest_0770 0.88 -0.1
839,684 - Psest_0770 0.88 +1.5
839,684 - Psest_0770 0.88 +1.7
839,765 + +0.0
839,765 + -0.5
839,766 - -2.0
839,766 - +0.1
839,766 - +0.4
839,766 - -0.4
839,766 - +0.4
839,837 - +1.5
839,837 - +1.6
839,843 + +0.0
839,843 + +0.4
839,843 + -0.3
839,844 - +2.3
839,844 - +0.7
839,844 - +1.5
839,889 - +1.1
839,928 - Psest_0771 0.17 +2.0
840,113 + Psest_0771 0.54 +0.5
840,113 + Psest_0771 0.54 +1.4
840,113 + Psest_0771 0.54 +2.4
840,113 + Psest_0771 0.54 +1.1
840,114 - Psest_0771 0.54 +2.0
840,114 - Psest_0771 0.54 +1.6
840,114 - Psest_0771 0.54 +2.6
840,114 - Psest_0771 0.54 +2.4
840,200 + Psest_0771 0.71 -0.3
840,200 + Psest_0771 0.71 +1.3
840,200 + Psest_0771 0.71 +1.5
840,200 + Psest_0771 0.71 +0.9
840,200 + Psest_0771 0.71 +0.9
840,200 + Psest_0771 0.71 +2.5
840,200 + Psest_0771 0.71 +0.7
840,200 + Psest_0771 0.71 +1.3
840,201 - Psest_0771 0.71 +2.1
840,230 + Psest_0771 0.77 +0.8
840,231 - Psest_0771 0.77 +1.1
840,248 + Psest_0771 0.81 +0.6
840,248 + Psest_0771 0.81 +0.2
840,248 + Psest_0771 0.81 +0.3
840,249 - Psest_0771 0.81 +1.3
840,249 - Psest_0771 0.81 +1.8
840,271 + Psest_0771 0.85 -0.1
840,271 + Psest_0771 0.85 +1.4
840,271 + Psest_0771 0.85 +2.1
840,271 + Psest_0771 0.85 +1.2
840,271 + Psest_0771 0.85 +1.8
840,271 + Psest_0771 0.85 -0.1
840,271 + Psest_0771 0.85 -0.7
840,271 + Psest_0771 0.85 +0.7
840,271 + Psest_0771 0.85 +0.8
840,271 + Psest_0771 0.85 +0.7
840,271 + Psest_0771 0.85 +0.5
840,271 + Psest_0771 0.85 +1.0
840,271 + Psest_0771 0.85 +1.3
840,271 + Psest_0771 0.85 +1.5
840,272 - Psest_0771 0.85 +1.8
840,272 - Psest_0771 0.85 +1.2
840,272 - Psest_0771 0.85 +1.4
840,272 - Psest_0771 0.85 +1.3
840,272 - Psest_0771 0.85 +2.0
840,272 - Psest_0771 0.85 +1.2
840,272 - Psest_0771 0.85 +1.5
840,272 - Psest_0771 0.85 +2.3
840,272 - Psest_0771 0.85 +1.1
840,272 - Psest_0771 0.85 +1.7
840,272 - Psest_0771 0.85 +0.6
840,272 - Psest_0771 0.85 +0.1
840,272 - Psest_0771 0.85 +2.0
840,272 - Psest_0771 0.85 +1.8
840,272 - Psest_0771 0.85 +0.8
840,340 + +1.1
840,340 + +0.2
840,340 + +0.5
840,340 + +0.7
840,340 + +2.2
840,340 + +2.0
840,340 + +0.5
840,340 + +1.0
840,340 + +1.0
840,340 + -0.5
840,341 - +0.5
840,341 - +3.6
840,341 - -0.3
840,341 - +1.4
840,341 - +2.0
840,341 - +1.0
840,341 - +1.9
840,379 + +1.1
840,379 + +1.1
840,380 - -0.6
840,380 - +0.9
840,380 - -0.7
840,384 + +0.1
840,385 - -1.5
840,385 - -0.8
840,487 + +1.4
840,509 + +0.2
840,509 + -1.4
840,509 + -0.4
840,510 - -0.0
840,510 - +1.2
840,631 + -2.7
840,631 + -0.8
840,631 + -1.3
840,766 + Psest_0772 0.12 -0.9
840,767 - Psest_0772 0.12 -2.4
840,767 - Psest_0772 0.12 -2.4
840,838 + Psest_0772 0.22 -1.2
840,908 - Psest_0772 0.32 -0.5
841,015 + Psest_0772 0.48 -1.7
841,016 - Psest_0772 0.48 -0.1
841,016 - Psest_0772 0.48 -1.2
841,174 + Psest_0772 0.71 -0.3
841,175 - Psest_0772 0.71 +0.8
841,289 - Psest_0772 0.88 +0.1
841,289 - Psest_0772 0.88 +0.2

Or see this region's nucleotide sequence