Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0762 and Psest_0763 overlap by 4 nucleotides Psest_0763 and Psest_0764 are separated by 241 nucleotides
Psest_0762: Psest_0762 - Glucose/sorbosone dehydrogenases, at 831,318 to 832,616
_0762
Psest_0763: Psest_0763 - Predicted membrane protein, at 832,613 to 833,062
_0763
Psest_0764: Psest_0764 - diguanylate cyclase (GGDEF) domain, at 833,304 to 834,860
_0764
Position (kb) 832
833
834 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 831.727 kb on + strand, within Psest_0762 at 831.727 kb on + strand, within Psest_0762 at 831.728 kb on - strand, within Psest_0762 at 831.728 kb on - strand, within Psest_0762 at 831.728 kb on - strand, within Psest_0762 at 831.744 kb on - strand, within Psest_0762 at 831.878 kb on - strand, within Psest_0762 at 831.976 kb on + strand, within Psest_0762 at 831.976 kb on + strand, within Psest_0762 at 831.976 kb on + strand, within Psest_0762 at 831.976 kb on + strand, within Psest_0762 at 831.976 kb on + strand, within Psest_0762 at 831.977 kb on - strand, within Psest_0762 at 831.977 kb on - strand, within Psest_0762 at 831.977 kb on - strand, within Psest_0762 at 831.977 kb on - strand, within Psest_0762 at 831.977 kb on - strand, within Psest_0762 at 831.982 kb on + strand, within Psest_0762 at 832.001 kb on + strand, within Psest_0762 at 832.002 kb on - strand, within Psest_0762 at 832.129 kb on + strand, within Psest_0762 at 832.129 kb on + strand, within Psest_0762 at 832.129 kb on + strand, within Psest_0762 at 832.129 kb on + strand, within Psest_0762 at 832.129 kb on + strand, within Psest_0762 at 832.129 kb on + strand, within Psest_0762 at 832.129 kb on + strand, within Psest_0762 at 832.130 kb on - strand, within Psest_0762 at 832.160 kb on - strand, within Psest_0762 at 832.201 kb on + strand, within Psest_0762 at 832.201 kb on + strand, within Psest_0762 at 832.202 kb on - strand, within Psest_0762 at 832.202 kb on - strand, within Psest_0762 at 832.438 kb on - strand, within Psest_0762 at 832.526 kb on - strand at 832.526 kb on - strand at 832.673 kb on + strand, within Psest_0763 at 832.750 kb on + strand, within Psest_0763 at 832.788 kb on + strand, within Psest_0763 at 832.788 kb on + strand, within Psest_0763 at 832.788 kb on + strand, within Psest_0763 at 832.789 kb on - strand, within Psest_0763 at 832.789 kb on - strand, within Psest_0763 at 832.789 kb on - strand, within Psest_0763 at 832.917 kb on + strand, within Psest_0763 at 832.917 kb on + strand, within Psest_0763 at 832.918 kb on - strand, within Psest_0763 at 832.918 kb on - strand, within Psest_0763 at 832.929 kb on + strand, within Psest_0763 at 832.930 kb on - strand, within Psest_0763 at 832.930 kb on - strand, within Psest_0763 at 833.023 kb on + strand at 833.024 kb on - strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.065 kb on - strand at 833.065 kb on - strand at 833.065 kb on - strand at 833.065 kb on - strand at 833.065 kb on - strand at 833.065 kb on - strand at 833.068 kb on + strand at 833.068 kb on + strand at 833.144 kb on + strand at 833.145 kb on - strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.360 kb on - strand at 833.360 kb on - strand at 833.360 kb on - strand at 833.360 kb on - strand at 833.360 kb on - strand at 833.360 kb on - strand at 833.360 kb on - strand at 833.360 kb on - strand at 833.360 kb on - strand at 833.360 kb on - strand at 833.587 kb on + strand, within Psest_0764 at 833.587 kb on + strand, within Psest_0764 at 833.587 kb on + strand, within Psest_0764 at 833.587 kb on + strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.631 kb on + strand, within Psest_0764 at 833.632 kb on - strand, within Psest_0764 at 833.732 kb on - strand, within Psest_0764 at 833.809 kb on + strand, within Psest_0764 at 833.809 kb on + strand, within Psest_0764 at 833.810 kb on - strand, within Psest_0764 at 833.810 kb on - strand, within Psest_0764 at 833.825 kb on - strand, within Psest_0764 at 833.934 kb on + strand, within Psest_0764 at 833.934 kb on + strand, within Psest_0764 at 833.935 kb on - strand, within Psest_0764 at 833.935 kb on - strand, within Psest_0764 at 833.935 kb on - strand, within Psest_0764 at 833.935 kb on - strand, within Psest_0764
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 831,727 + Psest_0762 0.31 -0.2 831,727 + Psest_0762 0.31 +0.8 831,728 - Psest_0762 0.32 +0.4 831,728 - Psest_0762 0.32 -0.3 831,728 - Psest_0762 0.32 -0.0 831,744 - Psest_0762 0.33 +1.0 831,878 - Psest_0762 0.43 +0.3 831,976 + Psest_0762 0.51 +0.9 831,976 + Psest_0762 0.51 +0.6 831,976 + Psest_0762 0.51 +3.5 831,976 + Psest_0762 0.51 +1.7 831,976 + Psest_0762 0.51 +1.8 831,977 - Psest_0762 0.51 +0.3 831,977 - Psest_0762 0.51 +0.7 831,977 - Psest_0762 0.51 +2.0 831,977 - Psest_0762 0.51 +0.9 831,977 - Psest_0762 0.51 +1.2 831,982 + Psest_0762 0.51 +1.5 832,001 + Psest_0762 0.53 +0.6 832,002 - Psest_0762 0.53 -1.5 832,129 + Psest_0762 0.62 +1.3 832,129 + Psest_0762 0.62 +1.0 832,129 + Psest_0762 0.62 +1.2 832,129 + Psest_0762 0.62 -1.7 832,129 + Psest_0762 0.62 +1.3 832,129 + Psest_0762 0.62 +0.5 832,129 + Psest_0762 0.62 +0.4 832,130 - Psest_0762 0.63 -1.0 832,160 - Psest_0762 0.65 -0.9 832,201 + Psest_0762 0.68 +1.6 832,201 + Psest_0762 0.68 +0.9 832,202 - Psest_0762 0.68 -3.0 832,202 - Psest_0762 0.68 -0.2 832,438 - Psest_0762 0.86 +1.2 832,526 - -0.1 832,526 - -0.8 832,673 + Psest_0763 0.13 +0.1 832,750 + Psest_0763 0.30 -0.9 832,788 + Psest_0763 0.39 +0.0 832,788 + Psest_0763 0.39 +0.2 832,788 + Psest_0763 0.39 -0.5 832,789 - Psest_0763 0.39 +0.2 832,789 - Psest_0763 0.39 -0.8 832,789 - Psest_0763 0.39 -1.1 832,917 + Psest_0763 0.68 -0.5 832,917 + Psest_0763 0.68 +0.8 832,918 - Psest_0763 0.68 -0.4 832,918 - Psest_0763 0.68 -0.8 832,929 + Psest_0763 0.70 +1.2 832,930 - Psest_0763 0.70 -0.3 832,930 - Psest_0763 0.70 +0.5 833,023 + +1.2 833,024 - +0.2 833,064 + +0.3 833,064 + -0.1 833,064 + -1.6 833,064 + -0.4 833,064 + -0.7 833,064 + +0.2 833,064 + +0.9 833,064 + -1.7 833,064 + +0.8 833,064 + -0.1 833,064 + +1.0 833,064 + +0.5 833,064 + +1.2 833,064 + -0.5 833,064 + +0.1 833,064 + +1.4 833,064 + +0.2 833,064 + +0.8 833,065 - -2.9 833,065 - -1.9 833,065 - -0.6 833,065 - -2.3 833,065 - +0.1 833,065 - +0.7 833,068 + +0.5 833,068 + -0.1 833,144 + +0.7 833,145 - -1.6 833,359 + +1.0 833,359 + +0.1 833,359 + +0.2 833,359 + -0.4 833,359 + +0.4 833,359 + -0.2 833,359 + -1.0 833,359 + +1.2 833,359 + -0.0 833,359 + +0.5 833,359 + +0.1 833,359 + -1.2 833,359 + -0.1 833,359 + -0.8 833,359 + -2.2 833,360 - -0.8 833,360 - +0.7 833,360 - -1.4 833,360 - -1.0 833,360 - +0.3 833,360 - -1.8 833,360 - -1.5 833,360 - -1.6 833,360 - +0.3 833,360 - -0.9 833,587 + Psest_0764 0.18 -0.9 833,587 + Psest_0764 0.18 -0.6 833,587 + Psest_0764 0.18 -0.3 833,587 + Psest_0764 0.18 +0.0 833,588 - Psest_0764 0.18 +1.0 833,588 - Psest_0764 0.18 -0.7 833,588 - Psest_0764 0.18 +0.4 833,588 - Psest_0764 0.18 +0.1 833,588 - Psest_0764 0.18 -0.8 833,588 - Psest_0764 0.18 -0.1 833,588 - Psest_0764 0.18 +0.5 833,588 - Psest_0764 0.18 +0.7 833,588 - Psest_0764 0.18 +0.3 833,588 - Psest_0764 0.18 -1.4 833,588 - Psest_0764 0.18 +0.2 833,588 - Psest_0764 0.18 +2.2 833,588 - Psest_0764 0.18 +0.5 833,588 - Psest_0764 0.18 +1.2 833,588 - Psest_0764 0.18 -0.3 833,588 - Psest_0764 0.18 +1.3 833,631 + Psest_0764 0.21 +0.5 833,632 - Psest_0764 0.21 +0.3 833,732 - Psest_0764 0.27 -0.7 833,809 + Psest_0764 0.32 -0.4 833,809 + Psest_0764 0.32 -0.9 833,810 - Psest_0764 0.32 -1.5 833,810 - Psest_0764 0.32 +1.9 833,825 - Psest_0764 0.33 -2.1 833,934 + Psest_0764 0.40 -0.2 833,934 + Psest_0764 0.40 +0.3 833,935 - Psest_0764 0.41 +0.6 833,935 - Psest_0764 0.41 +0.4 833,935 - Psest_0764 0.41 -0.7 833,935 - Psest_0764 0.41 -1.5
Or see this region's nucleotide sequence