Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0733 and Psest_0734 are separated by 4 nucleotides Psest_0734 and Psest_0735 are separated by 248 nucleotides Psest_0735 and Psest_0736 are separated by 49 nucleotides
Psest_0733: Psest_0733 - Cation/multidrug efflux pump, at 803,249 to 806,293
_0733
Psest_0734: Psest_0734 - RND family efflux transporter, MFP subunit, at 806,298 to 807,377
_0734
Psest_0735: Psest_0735 - bacterioferritin, at 807,626 to 808,093
_0735
Psest_0736: Psest_0736 - Methyl-accepting chemotaxis protein, at 808,143 to 810,065
_0736
Position (kb) 806
807
808 Strain fitness (log2 ratio) -2
-1
0
1
2 at 805.332 kb on + strand, within Psest_0733 at 805.332 kb on + strand, within Psest_0733 at 805.333 kb on - strand, within Psest_0733 at 805.399 kb on + strand, within Psest_0733 at 805.400 kb on - strand, within Psest_0733 at 805.500 kb on + strand, within Psest_0733 at 805.500 kb on + strand, within Psest_0733 at 805.500 kb on + strand, within Psest_0733 at 805.866 kb on + strand, within Psest_0733 at 805.878 kb on + strand, within Psest_0733 at 805.879 kb on - strand, within Psest_0733 at 806.240 kb on + strand at 806.278 kb on - strand at 806.278 kb on - strand at 806.430 kb on + strand, within Psest_0734 at 806.633 kb on - strand, within Psest_0734 at 806.674 kb on + strand, within Psest_0734 at 806.674 kb on + strand, within Psest_0734 at 806.674 kb on + strand, within Psest_0734 at 806.674 kb on + strand, within Psest_0734 at 807.119 kb on + strand, within Psest_0734 at 807.120 kb on - strand, within Psest_0734 at 807.436 kb on + strand at 807.436 kb on + strand at 807.437 kb on - strand at 807.437 kb on - strand at 807.437 kb on - strand at 807.595 kb on + strand at 807.595 kb on + strand at 807.621 kb on - strand at 807.654 kb on - strand at 807.699 kb on - strand, within Psest_0735 at 807.699 kb on - strand, within Psest_0735 at 807.719 kb on + strand, within Psest_0735 at 807.720 kb on - strand, within Psest_0735 at 807.720 kb on - strand, within Psest_0735 at 807.720 kb on - strand, within Psest_0735 at 807.746 kb on + strand, within Psest_0735 at 807.746 kb on + strand, within Psest_0735 at 807.746 kb on + strand, within Psest_0735 at 807.746 kb on + strand, within Psest_0735 at 807.747 kb on - strand, within Psest_0735 at 807.798 kb on + strand, within Psest_0735 at 807.798 kb on + strand, within Psest_0735 at 807.798 kb on + strand, within Psest_0735 at 807.905 kb on + strand, within Psest_0735 at 807.905 kb on + strand, within Psest_0735 at 807.905 kb on + strand, within Psest_0735 at 807.906 kb on - strand, within Psest_0735 at 807.906 kb on - strand, within Psest_0735 at 807.906 kb on - strand, within Psest_0735 at 807.906 kb on - strand, within Psest_0735 at 808.020 kb on - strand, within Psest_0735 at 808.070 kb on + strand at 808.071 kb on - strand at 808.113 kb on + strand at 808.113 kb on + strand at 808.113 kb on + strand at 808.113 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 805,332 + Psest_0733 0.68 +0.4 805,332 + Psest_0733 0.68 +0.3 805,333 - Psest_0733 0.68 -1.8 805,399 + Psest_0733 0.71 +0.6 805,400 - Psest_0733 0.71 -1.0 805,500 + Psest_0733 0.74 +1.6 805,500 + Psest_0733 0.74 +0.6 805,500 + Psest_0733 0.74 -0.7 805,866 + Psest_0733 0.86 +1.0 805,878 + Psest_0733 0.86 +1.5 805,879 - Psest_0733 0.86 +1.9 806,240 + +0.7 806,278 - +1.3 806,278 - -2.2 806,430 + Psest_0734 0.12 +1.5 806,633 - Psest_0734 0.31 -0.4 806,674 + Psest_0734 0.35 +0.8 806,674 + Psest_0734 0.35 +1.3 806,674 + Psest_0734 0.35 +1.6 806,674 + Psest_0734 0.35 +1.9 807,119 + Psest_0734 0.76 -0.4 807,120 - Psest_0734 0.76 -0.4 807,436 + +0.0 807,436 + -1.1 807,437 - +0.9 807,437 - +0.6 807,437 - +0.6 807,595 + +1.6 807,595 + +0.1 807,621 - +1.7 807,654 - +0.3 807,699 - Psest_0735 0.16 +0.1 807,699 - Psest_0735 0.16 -0.4 807,719 + Psest_0735 0.20 -1.6 807,720 - Psest_0735 0.20 -1.4 807,720 - Psest_0735 0.20 +0.9 807,720 - Psest_0735 0.20 -1.2 807,746 + Psest_0735 0.26 -0.9 807,746 + Psest_0735 0.26 -0.1 807,746 + Psest_0735 0.26 -0.0 807,746 + Psest_0735 0.26 -0.5 807,747 - Psest_0735 0.26 -1.4 807,798 + Psest_0735 0.37 -1.6 807,798 + Psest_0735 0.37 -0.1 807,798 + Psest_0735 0.37 -0.1 807,905 + Psest_0735 0.60 -1.1 807,905 + Psest_0735 0.60 -0.1 807,905 + Psest_0735 0.60 +0.5 807,906 - Psest_0735 0.60 +0.6 807,906 - Psest_0735 0.60 -0.8 807,906 - Psest_0735 0.60 +0.3 807,906 - Psest_0735 0.60 +0.6 808,020 - Psest_0735 0.84 -0.5 808,070 + +2.6 808,071 - +2.4 808,113 + -0.1 808,113 + +0.6 808,113 + -0.9 808,113 + -0.7
Or see this region's nucleotide sequence