Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0708

Experiment: Def Carbenicillin 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0706 and Psest_0707 overlap by 11 nucleotidesPsest_0707 and Psest_0708 are separated by 112 nucleotidesPsest_0708 and Psest_0709 are separated by 52 nucleotides Psest_0706: Psest_0706 - His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase., at 775,355 to 776,947 _0706 Psest_0707: Psest_0707 - MYND finger., at 776,937 to 777,170 _0707 Psest_0708: Psest_0708 - outer membrane assembly lipoprotein YfiO, at 777,283 to 778,272 _0708 Psest_0709: Psest_0709 - pseudouridine synthase, RluA family, at 778,325 to 779,452 _0709 Position (kb) 777 778 779Strain fitness (log2 ratio) -2 -1 0 1at 776.490 kb on + strand, within Psest_0706at 776.491 kb on - strand, within Psest_0706at 776.526 kb on + strand, within Psest_0706at 776.526 kb on + strand, within Psest_0706at 776.526 kb on + strand, within Psest_0706at 776.526 kb on + strand, within Psest_0706at 776.526 kb on + strand, within Psest_0706at 776.526 kb on + strand, within Psest_0706at 776.527 kb on - strand, within Psest_0706at 776.538 kb on + strand, within Psest_0706at 776.538 kb on + strand, within Psest_0706at 776.538 kb on + strand, within Psest_0706at 776.538 kb on + strand, within Psest_0706at 776.538 kb on + strand, within Psest_0706at 776.538 kb on + strand, within Psest_0706at 776.539 kb on - strand, within Psest_0706at 776.539 kb on - strand, within Psest_0706at 776.539 kb on - strand, within Psest_0706at 776.539 kb on - strand, within Psest_0706at 776.539 kb on - strand, within Psest_0706at 776.664 kb on + strand, within Psest_0706at 776.664 kb on + strand, within Psest_0706at 776.664 kb on + strand, within Psest_0706at 776.664 kb on + strand, within Psest_0706at 776.664 kb on + strand, within Psest_0706at 776.772 kb on + strand, within Psest_0706at 776.772 kb on + strand, within Psest_0706at 776.889 kb on + strandat 776.890 kb on - strandat 776.986 kb on + strand, within Psest_0707at 777.024 kb on + strand, within Psest_0707at 777.024 kb on + strand, within Psest_0707at 777.024 kb on + strand, within Psest_0707at 777.025 kb on - strand, within Psest_0707at 777.025 kb on - strand, within Psest_0707at 777.025 kb on - strand, within Psest_0707at 777.025 kb on - strand, within Psest_0707at 777.025 kb on - strand, within Psest_0707at 777.025 kb on - strand, within Psest_0707at 777.025 kb on - strand, within Psest_0707at 777.025 kb on - strand, within Psest_0707at 777.025 kb on - strand, within Psest_0707at 777.025 kb on - strand, within Psest_0707at 777.030 kb on + strand, within Psest_0707at 777.252 kb on + strandat 777.252 kb on + strandat 777.252 kb on + strandat 777.252 kb on + strandat 777.252 kb on + strandat 777.253 kb on - strandat 777.253 kb on - strandat 777.253 kb on - strandat 777.253 kb on - strandat 777.253 kb on - strandat 777.253 kb on - strandat 777.253 kb on - strandat 777.253 kb on - strandat 777.253 kb on - strandat 777.253 kb on - strandat 777.253 kb on - strandat 777.253 kb on - strandat 777.343 kb on + strandat 777.409 kb on + strand, within Psest_0708at 777.555 kb on - strand, within Psest_0708at 777.555 kb on - strand, within Psest_0708at 778.467 kb on + strand, within Psest_0709at 778.467 kb on + strand, within Psest_0709at 778.467 kb on + strand, within Psest_0709at 778.467 kb on + strand, within Psest_0709at 778.468 kb on - strand, within Psest_0709at 778.468 kb on - strand, within Psest_0709at 778.468 kb on - strand, within Psest_0709at 778.477 kb on + strand, within Psest_0709at 778.477 kb on + strand, within Psest_0709at 778.478 kb on - strand, within Psest_0709at 778.629 kb on + strand, within Psest_0709at 778.629 kb on + strand, within Psest_0709at 778.629 kb on + strand, within Psest_0709at 778.629 kb on + strand, within Psest_0709at 778.630 kb on - strand, within Psest_0709at 778.630 kb on - strand, within Psest_0709at 778.630 kb on - strand, within Psest_0709at 778.730 kb on - strand, within Psest_0709at 778.748 kb on + strand, within Psest_0709at 778.748 kb on + strand, within Psest_0709at 778.748 kb on + strand, within Psest_0709at 778.749 kb on - strand, within Psest_0709at 778.825 kb on + strand, within Psest_0709at 778.997 kb on + strand, within Psest_0709at 778.997 kb on + strand, within Psest_0709at 778.997 kb on + strand, within Psest_0709at 778.997 kb on + strand, within Psest_0709at 778.998 kb on - strand, within Psest_0709at 778.998 kb on - strand, within Psest_0709at 778.998 kb on - strand, within Psest_0709at 778.998 kb on - strand, within Psest_0709at 778.998 kb on - strand, within Psest_0709at 778.998 kb on - strand, within Psest_0709at 779.080 kb on + strand, within Psest_0709at 779.080 kb on + strand, within Psest_0709at 779.080 kb on + strand, within Psest_0709at 779.182 kb on + strand, within Psest_0709at 779.183 kb on - strand, within Psest_0709at 779.244 kb on - strand, within Psest_0709at 779.244 kb on - strand, within Psest_0709

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml
remove
776,490 + Psest_0706 0.71 -2.4
776,491 - Psest_0706 0.71 -0.1
776,526 + Psest_0706 0.74 -1.5
776,526 + Psest_0706 0.74 -1.5
776,526 + Psest_0706 0.74 -0.4
776,526 + Psest_0706 0.74 -2.7
776,526 + Psest_0706 0.74 -2.3
776,526 + Psest_0706 0.74 -1.2
776,527 - Psest_0706 0.74 -0.4
776,538 + Psest_0706 0.74 -1.6
776,538 + Psest_0706 0.74 -1.4
776,538 + Psest_0706 0.74 -0.4
776,538 + Psest_0706 0.74 -0.7
776,538 + Psest_0706 0.74 +0.2
776,538 + Psest_0706 0.74 -0.4
776,539 - Psest_0706 0.74 -1.1
776,539 - Psest_0706 0.74 -2.3
776,539 - Psest_0706 0.74 -0.2
776,539 - Psest_0706 0.74 -0.7
776,539 - Psest_0706 0.74 +0.5
776,664 + Psest_0706 0.82 -1.6
776,664 + Psest_0706 0.82 -0.7
776,664 + Psest_0706 0.82 -1.0
776,664 + Psest_0706 0.82 -0.1
776,664 + Psest_0706 0.82 -2.2
776,772 + Psest_0706 0.89 -2.0
776,772 + Psest_0706 0.89 -1.2
776,889 + -1.7
776,890 - -0.4
776,986 + Psest_0707 0.21 -0.8
777,024 + Psest_0707 0.37 -1.5
777,024 + Psest_0707 0.37 -2.7
777,024 + Psest_0707 0.37 -0.4
777,025 - Psest_0707 0.38 -1.0
777,025 - Psest_0707 0.38 -1.1
777,025 - Psest_0707 0.38 +0.4
777,025 - Psest_0707 0.38 -0.3
777,025 - Psest_0707 0.38 -1.1
777,025 - Psest_0707 0.38 -2.5
777,025 - Psest_0707 0.38 -1.0
777,025 - Psest_0707 0.38 -1.0
777,025 - Psest_0707 0.38 -0.3
777,025 - Psest_0707 0.38 -1.6
777,030 + Psest_0707 0.40 -0.4
777,252 + -2.7
777,252 + -0.5
777,252 + -1.0
777,252 + -0.9
777,252 + -2.1
777,253 - +0.6
777,253 - +0.4
777,253 - -0.6
777,253 - +0.9
777,253 - +0.3
777,253 - -0.6
777,253 - -0.6
777,253 - -0.3
777,253 - +0.6
777,253 - +0.1
777,253 - +0.1
777,253 - -0.6
777,343 + -1.2
777,409 + Psest_0708 0.13 -1.7
777,555 - Psest_0708 0.27 -1.6
777,555 - Psest_0708 0.27 +0.2
778,467 + Psest_0709 0.13 -0.4
778,467 + Psest_0709 0.13 -2.0
778,467 + Psest_0709 0.13 -1.8
778,467 + Psest_0709 0.13 -0.9
778,468 - Psest_0709 0.13 -1.2
778,468 - Psest_0709 0.13 -1.2
778,468 - Psest_0709 0.13 -0.1
778,477 + Psest_0709 0.13 -0.7
778,477 + Psest_0709 0.13 -1.8
778,478 - Psest_0709 0.14 -1.7
778,629 + Psest_0709 0.27 +0.3
778,629 + Psest_0709 0.27 -0.2
778,629 + Psest_0709 0.27 -0.1
778,629 + Psest_0709 0.27 -0.1
778,630 - Psest_0709 0.27 -1.3
778,630 - Psest_0709 0.27 -0.6
778,630 - Psest_0709 0.27 -1.5
778,730 - Psest_0709 0.36 -1.2
778,748 + Psest_0709 0.38 -0.9
778,748 + Psest_0709 0.38 +1.1
778,748 + Psest_0709 0.38 +0.6
778,749 - Psest_0709 0.38 -2.4
778,825 + Psest_0709 0.44 +0.6
778,997 + Psest_0709 0.60 +0.8
778,997 + Psest_0709 0.60 -0.0
778,997 + Psest_0709 0.60 +1.3
778,997 + Psest_0709 0.60 +0.4
778,998 - Psest_0709 0.60 +0.2
778,998 - Psest_0709 0.60 +0.4
778,998 - Psest_0709 0.60 +0.6
778,998 - Psest_0709 0.60 +0.3
778,998 - Psest_0709 0.60 -0.4
778,998 - Psest_0709 0.60 -0.6
779,080 + Psest_0709 0.67 +1.3
779,080 + Psest_0709 0.67 +0.8
779,080 + Psest_0709 0.67 +1.1
779,182 + Psest_0709 0.76 +0.4
779,183 - Psest_0709 0.76 -0.1
779,244 - Psest_0709 0.81 +0.0
779,244 - Psest_0709 0.81 -0.3

Or see this region's nucleotide sequence