Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0687

Experiment: Def Carbenicillin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0686 and Psest_0687 are separated by 283 nucleotidesPsest_0687 and Psest_0688 are separated by 89 nucleotides Psest_0686: Psest_0686 - Membrane protease subunits, stomatin/prohibitin homologs, at 749,591 to 750,457 _0686 Psest_0687: Psest_0687 - ATP phosphoribosyltransferase, regulatory subunit, at 750,741 to 751,928 _0687 Psest_0688: Psest_0688 - adenylosuccinate synthase, at 752,018 to 753,313 _0688 Position (kb) 750 751 752Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 750.455 kb on + strandat 750.593 kb on + strandat 750.657 kb on + strandat 750.657 kb on + strandat 750.657 kb on + strandat 750.824 kb on + strandat 750.824 kb on + strandat 750.824 kb on + strandat 750.824 kb on + strandat 750.935 kb on + strand, within Psest_0687at 751.022 kb on + strand, within Psest_0687at 751.022 kb on + strand, within Psest_0687at 751.022 kb on + strand, within Psest_0687at 751.022 kb on + strand, within Psest_0687at 751.022 kb on + strand, within Psest_0687at 751.022 kb on + strand, within Psest_0687at 751.373 kb on + strand, within Psest_0687at 751.373 kb on + strand, within Psest_0687at 751.373 kb on + strand, within Psest_0687at 751.373 kb on + strand, within Psest_0687at 751.373 kb on + strand, within Psest_0687at 751.374 kb on - strand, within Psest_0687at 751.374 kb on - strand, within Psest_0687at 751.374 kb on - strand, within Psest_0687at 751.374 kb on - strand, within Psest_0687at 751.374 kb on - strand, within Psest_0687at 751.374 kb on - strand, within Psest_0687at 751.374 kb on - strand, within Psest_0687at 751.374 kb on - strand, within Psest_0687at 751.378 kb on + strand, within Psest_0687at 751.378 kb on + strand, within Psest_0687at 751.378 kb on + strand, within Psest_0687at 751.378 kb on + strand, within Psest_0687at 751.378 kb on + strand, within Psest_0687at 751.378 kb on + strand, within Psest_0687at 751.378 kb on + strand, within Psest_0687at 751.530 kb on + strand, within Psest_0687at 751.530 kb on + strand, within Psest_0687at 751.530 kb on + strand, within Psest_0687at 751.557 kb on + strand, within Psest_0687at 751.568 kb on + strand, within Psest_0687at 751.568 kb on + strand, within Psest_0687at 751.588 kb on + strand, within Psest_0687at 751.588 kb on + strand, within Psest_0687at 751.632 kb on + strand, within Psest_0687at 751.892 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml
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750,455 + +1.6
750,593 + +0.3
750,657 + -0.1
750,657 + +0.2
750,657 + +0.6
750,824 + -2.0
750,824 + -5.9
750,824 + -3.3
750,824 + -1.7
750,935 + Psest_0687 0.16 -0.8
751,022 + Psest_0687 0.24 -1.1
751,022 + Psest_0687 0.24 +0.7
751,022 + Psest_0687 0.24 -1.5
751,022 + Psest_0687 0.24 -1.7
751,022 + Psest_0687 0.24 -3.8
751,022 + Psest_0687 0.24 -3.6
751,373 + Psest_0687 0.53 -2.9
751,373 + Psest_0687 0.53 -1.9
751,373 + Psest_0687 0.53 -2.8
751,373 + Psest_0687 0.53 -1.8
751,373 + Psest_0687 0.53 -2.7
751,374 - Psest_0687 0.53 -3.0
751,374 - Psest_0687 0.53 -0.1
751,374 - Psest_0687 0.53 -1.9
751,374 - Psest_0687 0.53 -2.1
751,374 - Psest_0687 0.53 -2.8
751,374 - Psest_0687 0.53 -1.2
751,374 - Psest_0687 0.53 -1.8
751,374 - Psest_0687 0.53 -2.8
751,378 + Psest_0687 0.54 -2.2
751,378 + Psest_0687 0.54 -2.7
751,378 + Psest_0687 0.54 -2.5
751,378 + Psest_0687 0.54 -3.0
751,378 + Psest_0687 0.54 -2.9
751,378 + Psest_0687 0.54 -2.4
751,378 + Psest_0687 0.54 -1.8
751,530 + Psest_0687 0.66 -3.3
751,530 + Psest_0687 0.66 -2.5
751,530 + Psest_0687 0.66 -2.4
751,557 + Psest_0687 0.69 -2.0
751,568 + Psest_0687 0.70 -2.4
751,568 + Psest_0687 0.70 -1.4
751,588 + Psest_0687 0.71 -4.2
751,588 + Psest_0687 0.71 -3.3
751,632 + Psest_0687 0.75 -1.6
751,892 + -2.9

Or see this region's nucleotide sequence