Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0647

Experiment: Def Carbenicillin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0645 and Psest_0646 overlap by 4 nucleotidesPsest_0646 and Psest_0647 overlap by 4 nucleotidesPsest_0647 and Psest_0648 overlap by 4 nucleotides Psest_0645: Psest_0645 - Siderophore synthetase component, at 699,447 to 701,255 _0645 Psest_0646: Psest_0646 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 701,252 to 701,839 _0646 Psest_0647: Psest_0647 - Arabinose efflux permease, at 701,836 to 702,990 _0647 Psest_0648: Psest_0648 - Lysine/ornithine N-monooxygenase, at 702,987 to 704,306 _0648 Position (kb) 701 702 703Strain fitness (log2 ratio) -2 -1 0 1 2 3at 700.839 kb on - strand, within Psest_0645at 700.861 kb on + strand, within Psest_0645at 700.861 kb on + strand, within Psest_0645at 700.861 kb on + strand, within Psest_0645at 700.861 kb on + strand, within Psest_0645at 700.861 kb on + strand, within Psest_0645at 701.507 kb on + strand, within Psest_0646at 701.507 kb on + strand, within Psest_0646at 701.507 kb on + strand, within Psest_0646at 701.507 kb on + strand, within Psest_0646at 701.508 kb on - strand, within Psest_0646at 701.508 kb on - strand, within Psest_0646at 701.508 kb on - strand, within Psest_0646at 701.661 kb on + strand, within Psest_0646at 701.661 kb on + strand, within Psest_0646at 701.662 kb on - strand, within Psest_0646at 701.662 kb on - strand, within Psest_0646at 701.662 kb on - strand, within Psest_0646at 701.662 kb on - strand, within Psest_0646at 701.662 kb on - strand, within Psest_0646at 701.662 kb on - strand, within Psest_0646at 701.712 kb on + strand, within Psest_0646at 701.713 kb on - strand, within Psest_0646at 701.793 kb on + strandat 702.041 kb on + strand, within Psest_0647at 702.042 kb on - strand, within Psest_0647at 702.099 kb on - strand, within Psest_0647at 702.218 kb on + strand, within Psest_0647at 702.218 kb on + strand, within Psest_0647at 702.219 kb on - strand, within Psest_0647at 702.219 kb on - strand, within Psest_0647at 702.263 kb on + strand, within Psest_0647at 702.315 kb on - strand, within Psest_0647at 702.341 kb on + strand, within Psest_0647at 702.341 kb on + strand, within Psest_0647at 702.341 kb on + strand, within Psest_0647at 702.342 kb on - strand, within Psest_0647at 702.342 kb on - strand, within Psest_0647at 702.342 kb on - strand, within Psest_0647at 702.342 kb on - strand, within Psest_0647at 702.353 kb on + strand, within Psest_0647at 702.353 kb on + strand, within Psest_0647at 702.353 kb on + strand, within Psest_0647at 702.354 kb on - strand, within Psest_0647at 702.354 kb on - strand, within Psest_0647at 702.354 kb on - strand, within Psest_0647at 702.533 kb on + strand, within Psest_0647at 702.533 kb on + strand, within Psest_0647at 702.533 kb on + strand, within Psest_0647at 702.534 kb on - strand, within Psest_0647at 702.534 kb on - strand, within Psest_0647at 702.534 kb on - strand, within Psest_0647at 702.610 kb on - strand, within Psest_0647at 702.648 kb on - strand, within Psest_0647at 702.648 kb on - strand, within Psest_0647at 702.653 kb on + strand, within Psest_0647at 702.653 kb on + strand, within Psest_0647at 702.653 kb on + strand, within Psest_0647at 702.653 kb on + strand, within Psest_0647at 702.653 kb on + strand, within Psest_0647at 702.654 kb on - strand, within Psest_0647at 702.654 kb on - strand, within Psest_0647at 702.654 kb on - strand, within Psest_0647at 702.665 kb on + strand, within Psest_0647at 702.666 kb on - strand, within Psest_0647at 702.861 kb on - strand, within Psest_0647at 702.908 kb on + strandat 702.908 kb on + strandat 702.908 kb on + strandat 702.909 kb on - strandat 702.917 kb on + strandat 703.070 kb on - strandat 703.207 kb on + strand, within Psest_0648at 703.207 kb on + strand, within Psest_0648at 703.207 kb on + strand, within Psest_0648at 703.207 kb on + strand, within Psest_0648at 703.207 kb on + strand, within Psest_0648at 703.207 kb on + strand, within Psest_0648at 703.207 kb on + strand, within Psest_0648at 703.208 kb on - strand, within Psest_0648at 703.208 kb on - strand, within Psest_0648at 703.208 kb on - strand, within Psest_0648at 703.208 kb on - strand, within Psest_0648at 703.208 kb on - strand, within Psest_0648at 703.333 kb on + strand, within Psest_0648at 703.459 kb on + strand, within Psest_0648at 703.459 kb on + strand, within Psest_0648at 703.459 kb on + strand, within Psest_0648at 703.459 kb on + strand, within Psest_0648at 703.459 kb on + strand, within Psest_0648at 703.459 kb on + strand, within Psest_0648at 703.459 kb on + strand, within Psest_0648at 703.459 kb on + strand, within Psest_0648at 703.459 kb on + strand, within Psest_0648at 703.459 kb on + strand, within Psest_0648at 703.459 kb on + strand, within Psest_0648at 703.472 kb on - strand, within Psest_0648at 703.472 kb on - strand, within Psest_0648at 703.472 kb on - strand, within Psest_0648at 703.507 kb on + strand, within Psest_0648at 703.507 kb on + strand, within Psest_0648at 703.507 kb on + strand, within Psest_0648at 703.508 kb on - strand, within Psest_0648at 703.567 kb on + strand, within Psest_0648at 703.568 kb on - strand, within Psest_0648at 703.568 kb on - strand, within Psest_0648at 703.612 kb on + strand, within Psest_0648at 703.612 kb on + strand, within Psest_0648at 703.612 kb on + strand, within Psest_0648at 703.612 kb on + strand, within Psest_0648at 703.612 kb on + strand, within Psest_0648at 703.613 kb on - strand, within Psest_0648at 703.693 kb on + strand, within Psest_0648at 703.696 kb on + strand, within Psest_0648at 703.696 kb on + strand, within Psest_0648at 703.696 kb on + strand, within Psest_0648at 703.696 kb on + strand, within Psest_0648at 703.697 kb on - strand, within Psest_0648at 703.774 kb on + strand, within Psest_0648at 703.774 kb on + strand, within Psest_0648at 703.774 kb on + strand, within Psest_0648at 703.775 kb on - strand, within Psest_0648at 703.775 kb on - strand, within Psest_0648at 703.775 kb on - strand, within Psest_0648at 703.775 kb on - strand, within Psest_0648at 703.828 kb on + strand, within Psest_0648at 703.828 kb on + strand, within Psest_0648at 703.829 kb on - strand, within Psest_0648at 703.851 kb on + strand, within Psest_0648at 703.852 kb on - strand, within Psest_0648

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml
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700,839 - Psest_0645 0.77 -2.2
700,861 + Psest_0645 0.78 -0.3
700,861 + Psest_0645 0.78 -0.8
700,861 + Psest_0645 0.78 -0.4
700,861 + Psest_0645 0.78 +0.2
700,861 + Psest_0645 0.78 -0.7
701,507 + Psest_0646 0.43 -0.2
701,507 + Psest_0646 0.43 -1.1
701,507 + Psest_0646 0.43 +1.3
701,507 + Psest_0646 0.43 -2.3
701,508 - Psest_0646 0.44 +0.1
701,508 - Psest_0646 0.44 +0.4
701,508 - Psest_0646 0.44 -0.1
701,661 + Psest_0646 0.70 -2.6
701,661 + Psest_0646 0.70 -1.3
701,662 - Psest_0646 0.70 -1.8
701,662 - Psest_0646 0.70 -0.0
701,662 - Psest_0646 0.70 +0.1
701,662 - Psest_0646 0.70 -2.5
701,662 - Psest_0646 0.70 +1.9
701,662 - Psest_0646 0.70 -0.2
701,712 + Psest_0646 0.78 -1.3
701,713 - Psest_0646 0.78 -1.6
701,793 + -2.3
702,041 + Psest_0647 0.18 +1.1
702,042 - Psest_0647 0.18 +1.9
702,099 - Psest_0647 0.23 +0.4
702,218 + Psest_0647 0.33 -0.0
702,218 + Psest_0647 0.33 -1.2
702,219 - Psest_0647 0.33 -0.3
702,219 - Psest_0647 0.33 -0.6
702,263 + Psest_0647 0.37 -1.2
702,315 - Psest_0647 0.41 +0.6
702,341 + Psest_0647 0.44 -1.7
702,341 + Psest_0647 0.44 -0.1
702,341 + Psest_0647 0.44 -0.6
702,342 - Psest_0647 0.44 +0.8
702,342 - Psest_0647 0.44 -0.0
702,342 - Psest_0647 0.44 +0.5
702,342 - Psest_0647 0.44 -0.2
702,353 + Psest_0647 0.45 -1.1
702,353 + Psest_0647 0.45 -0.9
702,353 + Psest_0647 0.45 -1.1
702,354 - Psest_0647 0.45 -0.8
702,354 - Psest_0647 0.45 -0.2
702,354 - Psest_0647 0.45 +0.9
702,533 + Psest_0647 0.60 -0.1
702,533 + Psest_0647 0.60 +2.1
702,533 + Psest_0647 0.60 -2.7
702,534 - Psest_0647 0.60 -1.7
702,534 - Psest_0647 0.60 +0.6
702,534 - Psest_0647 0.60 -1.4
702,610 - Psest_0647 0.67 +0.7
702,648 - Psest_0647 0.70 +0.4
702,648 - Psest_0647 0.70 -0.6
702,653 + Psest_0647 0.71 -0.7
702,653 + Psest_0647 0.71 -1.4
702,653 + Psest_0647 0.71 +0.5
702,653 + Psest_0647 0.71 -1.4
702,653 + Psest_0647 0.71 -1.8
702,654 - Psest_0647 0.71 -1.0
702,654 - Psest_0647 0.71 -0.5
702,654 - Psest_0647 0.71 -0.4
702,665 + Psest_0647 0.72 +1.2
702,666 - Psest_0647 0.72 +0.3
702,861 - Psest_0647 0.89 +2.1
702,908 + +0.7
702,908 + -0.3
702,908 + -1.5
702,909 - -0.6
702,917 + +0.7
703,070 - +0.8
703,207 + Psest_0648 0.17 -0.6
703,207 + Psest_0648 0.17 -0.6
703,207 + Psest_0648 0.17 -1.1
703,207 + Psest_0648 0.17 +0.9
703,207 + Psest_0648 0.17 -0.8
703,207 + Psest_0648 0.17 -0.1
703,207 + Psest_0648 0.17 -0.6
703,208 - Psest_0648 0.17 +1.1
703,208 - Psest_0648 0.17 +2.9
703,208 - Psest_0648 0.17 -0.6
703,208 - Psest_0648 0.17 -1.5
703,208 - Psest_0648 0.17 +0.2
703,333 + Psest_0648 0.26 -0.1
703,459 + Psest_0648 0.36 +2.9
703,459 + Psest_0648 0.36 +0.5
703,459 + Psest_0648 0.36 +1.4
703,459 + Psest_0648 0.36 +0.1
703,459 + Psest_0648 0.36 +0.7
703,459 + Psest_0648 0.36 -0.8
703,459 + Psest_0648 0.36 +0.4
703,459 + Psest_0648 0.36 -0.7
703,459 + Psest_0648 0.36 +0.0
703,459 + Psest_0648 0.36 -1.1
703,459 + Psest_0648 0.36 +1.0
703,472 - Psest_0648 0.37 +0.0
703,472 - Psest_0648 0.37 -0.8
703,472 - Psest_0648 0.37 -0.4
703,507 + Psest_0648 0.39 +1.3
703,507 + Psest_0648 0.39 -0.4
703,507 + Psest_0648 0.39 -0.6
703,508 - Psest_0648 0.39 -1.3
703,567 + Psest_0648 0.44 +1.3
703,568 - Psest_0648 0.44 +2.1
703,568 - Psest_0648 0.44 -1.4
703,612 + Psest_0648 0.47 -1.7
703,612 + Psest_0648 0.47 -0.7
703,612 + Psest_0648 0.47 -0.6
703,612 + Psest_0648 0.47 -0.8
703,612 + Psest_0648 0.47 -0.4
703,613 - Psest_0648 0.47 +0.3
703,693 + Psest_0648 0.53 -0.7
703,696 + Psest_0648 0.54 +0.9
703,696 + Psest_0648 0.54 -1.3
703,696 + Psest_0648 0.54 -1.2
703,696 + Psest_0648 0.54 +0.1
703,697 - Psest_0648 0.54 -0.8
703,774 + Psest_0648 0.60 -0.3
703,774 + Psest_0648 0.60 -1.4
703,774 + Psest_0648 0.60 +0.4
703,775 - Psest_0648 0.60 -1.8
703,775 - Psest_0648 0.60 -1.0
703,775 - Psest_0648 0.60 -0.5
703,775 - Psest_0648 0.60 -0.3
703,828 + Psest_0648 0.64 +0.6
703,828 + Psest_0648 0.64 +0.8
703,829 - Psest_0648 0.64 +0.9
703,851 + Psest_0648 0.65 -1.4
703,852 - Psest_0648 0.66 -1.6

Or see this region's nucleotide sequence