Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0631 and Psest_0632 overlap by 4 nucleotides Psest_0632 and Psest_0633 are separated by 0 nucleotides Psest_0633 and Psest_0634 overlap by 11 nucleotides
Psest_0631: Psest_0631 - Site-specific recombinase XerD, at 682,953 to 684,428
_0631
Psest_0632: Psest_0632 - hypothetical protein, at 684,425 to 685,033
_0632
Psest_0633: Psest_0633 - Phage integrase family., at 685,034 to 687,130
_0633
Psest_0634: Psest_0634 - hypothetical protein, at 687,120 to 689,402
_0634
Position (kb) 685
686
687
688 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 684.091 kb on - strand, within Psest_0631 at 684.134 kb on + strand, within Psest_0631 at 684.135 kb on - strand, within Psest_0631 at 684.169 kb on - strand, within Psest_0631 at 684.190 kb on + strand, within Psest_0631 at 684.228 kb on + strand, within Psest_0631 at 684.261 kb on + strand, within Psest_0631 at 684.261 kb on + strand, within Psest_0631 at 684.261 kb on + strand, within Psest_0631 at 684.261 kb on + strand, within Psest_0631 at 684.261 kb on + strand, within Psest_0631 at 684.274 kb on + strand, within Psest_0631 at 684.275 kb on - strand, within Psest_0631 at 684.350 kb on + strand at 684.368 kb on - strand at 684.390 kb on - strand at 684.390 kb on - strand at 684.398 kb on + strand at 684.521 kb on - strand, within Psest_0632 at 684.558 kb on - strand, within Psest_0632 at 684.577 kb on + strand, within Psest_0632 at 684.578 kb on - strand, within Psest_0632 at 684.675 kb on - strand, within Psest_0632 at 684.675 kb on - strand, within Psest_0632 at 684.854 kb on + strand, within Psest_0632 at 684.921 kb on - strand, within Psest_0632 at 685.069 kb on + strand at 685.180 kb on + strand at 685.206 kb on - strand at 685.215 kb on - strand at 685.310 kb on - strand, within Psest_0633 at 685.679 kb on + strand, within Psest_0633 at 685.806 kb on - strand, within Psest_0633 at 685.826 kb on - strand, within Psest_0633 at 685.827 kb on + strand, within Psest_0633 at 685.878 kb on + strand, within Psest_0633 at 685.928 kb on + strand, within Psest_0633 at 685.928 kb on + strand, within Psest_0633 at 685.928 kb on + strand, within Psest_0633 at 685.928 kb on + strand, within Psest_0633 at 685.929 kb on - strand, within Psest_0633 at 685.986 kb on - strand, within Psest_0633 at 685.999 kb on + strand, within Psest_0633 at 686.000 kb on - strand, within Psest_0633 at 686.077 kb on - strand, within Psest_0633 at 686.180 kb on + strand, within Psest_0633 at 686.180 kb on + strand, within Psest_0633 at 686.181 kb on - strand, within Psest_0633 at 686.198 kb on + strand, within Psest_0633 at 686.244 kb on + strand, within Psest_0633 at 686.244 kb on + strand, within Psest_0633 at 686.245 kb on - strand, within Psest_0633 at 686.245 kb on - strand, within Psest_0633 at 686.366 kb on + strand, within Psest_0633 at 686.484 kb on + strand, within Psest_0633 at 686.514 kb on + strand, within Psest_0633 at 686.556 kb on - strand, within Psest_0633 at 686.556 kb on - strand, within Psest_0633 at 686.597 kb on + strand, within Psest_0633 at 686.598 kb on - strand, within Psest_0633 at 686.856 kb on - strand, within Psest_0633 at 686.856 kb on - strand, within Psest_0633 at 687.085 kb on - strand at 687.130 kb on + strand at 687.131 kb on - strand at 687.133 kb on - strand at 687.261 kb on + strand at 687.315 kb on + strand at 687.315 kb on + strand at 687.352 kb on + strand, within Psest_0634 at 687.353 kb on - strand, within Psest_0634 at 687.531 kb on + strand, within Psest_0634 at 687.673 kb on + strand, within Psest_0634 at 687.675 kb on + strand, within Psest_0634 at 687.676 kb on - strand, within Psest_0634 at 687.676 kb on - strand, within Psest_0634 at 687.676 kb on - strand, within Psest_0634 at 687.758 kb on + strand, within Psest_0634 at 687.882 kb on + strand, within Psest_0634 at 687.982 kb on - strand, within Psest_0634 at 688.076 kb on + strand, within Psest_0634
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 684,091 - Psest_0631 0.77 +0.1 684,134 + Psest_0631 0.80 -1.4 684,135 - Psest_0631 0.80 -0.8 684,169 - Psest_0631 0.82 -0.3 684,190 + Psest_0631 0.84 -1.1 684,228 + Psest_0631 0.86 -0.1 684,261 + Psest_0631 0.89 -0.4 684,261 + Psest_0631 0.89 +0.3 684,261 + Psest_0631 0.89 -1.3 684,261 + Psest_0631 0.89 -1.1 684,261 + Psest_0631 0.89 -0.6 684,274 + Psest_0631 0.89 -0.8 684,275 - Psest_0631 0.90 -0.1 684,350 + -2.3 684,368 - -0.1 684,390 - -1.4 684,390 - -2.8 684,398 + -0.8 684,521 - Psest_0632 0.16 -1.8 684,558 - Psest_0632 0.22 +0.6 684,577 + Psest_0632 0.25 -1.3 684,578 - Psest_0632 0.25 +1.3 684,675 - Psest_0632 0.41 -0.2 684,675 - Psest_0632 0.41 -1.4 684,854 + Psest_0632 0.70 +0.1 684,921 - Psest_0632 0.81 +0.1 685,069 + -1.3 685,180 + -1.2 685,206 - -1.2 685,215 - -1.0 685,310 - Psest_0633 0.13 -1.2 685,679 + Psest_0633 0.31 -2.3 685,806 - Psest_0633 0.37 +0.3 685,826 - Psest_0633 0.38 +0.9 685,827 + Psest_0633 0.38 -2.1 685,878 + Psest_0633 0.40 -0.4 685,928 + Psest_0633 0.43 -2.4 685,928 + Psest_0633 0.43 -1.8 685,928 + Psest_0633 0.43 -0.1 685,928 + Psest_0633 0.43 +0.3 685,929 - Psest_0633 0.43 +2.9 685,986 - Psest_0633 0.45 +0.9 685,999 + Psest_0633 0.46 -0.1 686,000 - Psest_0633 0.46 -0.4 686,077 - Psest_0633 0.50 -1.6 686,180 + Psest_0633 0.55 -1.4 686,180 + Psest_0633 0.55 -0.9 686,181 - Psest_0633 0.55 -0.7 686,198 + Psest_0633 0.56 +1.3 686,244 + Psest_0633 0.58 -1.4 686,244 + Psest_0633 0.58 -0.4 686,245 - Psest_0633 0.58 +1.3 686,245 - Psest_0633 0.58 -1.3 686,366 + Psest_0633 0.64 -2.9 686,484 + Psest_0633 0.69 -2.2 686,514 + Psest_0633 0.71 -0.6 686,556 - Psest_0633 0.73 -2.4 686,556 - Psest_0633 0.73 -0.6 686,597 + Psest_0633 0.75 +2.5 686,598 - Psest_0633 0.75 -0.3 686,856 - Psest_0633 0.87 -0.1 686,856 - Psest_0633 0.87 -1.9 687,085 - +0.3 687,130 + -1.2 687,131 - -1.6 687,133 - -1.4 687,261 + -0.8 687,315 + +0.1 687,315 + -1.4 687,352 + Psest_0634 0.10 -0.2 687,353 - Psest_0634 0.10 -0.2 687,531 + Psest_0634 0.18 +0.7 687,673 + Psest_0634 0.24 -1.1 687,675 + Psest_0634 0.24 +0.3 687,676 - Psest_0634 0.24 -3.1 687,676 - Psest_0634 0.24 -2.8 687,676 - Psest_0634 0.24 -1.0 687,758 + Psest_0634 0.28 -1.0 687,882 + Psest_0634 0.33 -1.1 687,982 - Psest_0634 0.38 +1.2 688,076 + Psest_0634 0.42 +1.5
Or see this region's nucleotide sequence