Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0600 and Psest_0601 are separated by 476 nucleotides Psest_0601 and Psest_0602 are separated by 198 nucleotides Psest_0602 and Psest_0603 are separated by 116 nucleotides
Psest_0600: Psest_0600 - copper-(or silver)-translocating P-type ATPase, at 651,354 to 653,717
_0600
Psest_0601: Psest_0601 - hypothetical protein, at 654,194 to 654,316
_0601
Psest_0602: Psest_0602 - hypothetical protein, at 654,515 to 655,561
_0602
Psest_0603: Psest_0603 - hypothetical protein, at 655,678 to 656,121
_0603
Position (kb) 654
655
656 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 653.536 kb on + strand at 653.590 kb on + strand at 653.590 kb on + strand at 653.591 kb on - strand at 653.605 kb on + strand at 653.673 kb on - strand at 653.673 kb on - strand at 653.717 kb on + strand at 653.717 kb on + strand at 653.730 kb on - strand at 653.758 kb on - strand at 653.808 kb on + strand at 653.808 kb on + strand at 653.808 kb on + strand at 653.808 kb on + strand at 653.808 kb on + strand at 653.808 kb on + strand at 653.808 kb on + strand at 653.809 kb on - strand at 653.809 kb on - strand at 653.809 kb on - strand at 653.809 kb on - strand at 653.809 kb on - strand at 653.809 kb on - strand at 653.810 kb on + strand at 653.811 kb on - strand at 653.811 kb on - strand at 653.811 kb on - strand at 653.811 kb on - strand at 653.811 kb on - strand at 653.811 kb on - strand at 653.811 kb on - strand at 653.840 kb on + strand at 653.847 kb on + strand at 653.847 kb on + strand at 653.847 kb on + strand at 653.848 kb on - strand at 653.848 kb on - strand at 653.848 kb on - strand at 653.870 kb on + strand at 653.870 kb on + strand at 653.882 kb on + strand at 653.882 kb on + strand at 653.882 kb on + strand at 653.882 kb on + strand at 653.883 kb on - strand at 653.886 kb on + strand at 653.886 kb on + strand at 653.886 kb on + strand at 653.886 kb on + strand at 653.886 kb on + strand at 653.886 kb on + strand at 653.886 kb on + strand at 653.886 kb on + strand at 653.886 kb on + strand at 653.886 kb on + strand at 653.886 kb on + strand at 653.887 kb on - strand at 653.887 kb on - strand at 653.887 kb on - strand at 653.887 kb on - strand at 653.887 kb on - strand at 653.887 kb on - strand at 653.913 kb on - strand at 653.913 kb on - strand at 653.925 kb on + strand at 653.940 kb on + strand at 653.945 kb on + strand at 653.946 kb on - strand at 653.946 kb on - strand at 653.946 kb on - strand at 653.946 kb on - strand at 653.946 kb on - strand at 654.018 kb on + strand at 654.018 kb on + strand at 654.019 kb on - strand at 654.034 kb on - strand at 654.062 kb on - strand at 654.068 kb on + strand at 654.079 kb on + strand at 654.191 kb on + strand at 654.191 kb on + strand at 654.195 kb on + strand at 654.195 kb on + strand at 654.195 kb on + strand at 654.196 kb on - strand at 654.196 kb on - strand at 654.197 kb on + strand at 654.198 kb on - strand at 654.215 kb on + strand, within Psest_0601 at 654.232 kb on + strand, within Psest_0601 at 654.232 kb on + strand, within Psest_0601 at 654.232 kb on + strand, within Psest_0601 at 654.406 kb on + strand at 654.406 kb on + strand at 654.407 kb on - strand at 654.407 kb on - strand at 654.460 kb on + strand at 654.474 kb on + strand at 654.534 kb on - strand at 654.534 kb on - strand at 654.534 kb on - strand at 654.594 kb on + strand at 654.594 kb on + strand at 654.595 kb on - strand at 654.595 kb on - strand at 654.619 kb on + strand at 654.754 kb on + strand, within Psest_0602 at 654.774 kb on + strand, within Psest_0602 at 654.775 kb on - strand, within Psest_0602 at 654.794 kb on - strand, within Psest_0602 at 654.794 kb on - strand, within Psest_0602 at 654.794 kb on - strand, within Psest_0602 at 654.807 kb on + strand, within Psest_0602 at 654.857 kb on + strand, within Psest_0602 at 654.871 kb on + strand, within Psest_0602 at 654.874 kb on + strand, within Psest_0602 at 654.874 kb on + strand, within Psest_0602 at 654.875 kb on - strand, within Psest_0602 at 654.981 kb on + strand, within Psest_0602 at 654.981 kb on + strand, within Psest_0602 at 654.981 kb on + strand, within Psest_0602 at 654.989 kb on + strand, within Psest_0602 at 654.989 kb on + strand, within Psest_0602 at 654.990 kb on - strand, within Psest_0602 at 655.038 kb on + strand, within Psest_0602 at 655.038 kb on + strand, within Psest_0602 at 655.038 kb on + strand, within Psest_0602 at 655.038 kb on + strand, within Psest_0602 at 655.038 kb on + strand, within Psest_0602 at 655.039 kb on - strand, within Psest_0602 at 655.039 kb on - strand, within Psest_0602 at 655.084 kb on + strand, within Psest_0602 at 655.101 kb on + strand, within Psest_0602 at 655.102 kb on - strand, within Psest_0602 at 655.114 kb on - strand, within Psest_0602 at 655.203 kb on - strand, within Psest_0602 at 655.279 kb on + strand, within Psest_0602 at 655.279 kb on + strand, within Psest_0602 at 655.360 kb on + strand, within Psest_0602 at 655.392 kb on + strand, within Psest_0602 at 655.392 kb on + strand, within Psest_0602 at 655.451 kb on - strand, within Psest_0602 at 655.483 kb on + strand at 655.486 kb on + strand at 655.509 kb on - strand at 655.546 kb on + strand at 655.567 kb on + strand at 655.568 kb on - strand at 655.626 kb on - strand at 655.804 kb on + strand, within Psest_0603 at 655.804 kb on + strand, within Psest_0603 at 655.804 kb on + strand, within Psest_0603 at 655.804 kb on + strand, within Psest_0603 at 655.804 kb on + strand, within Psest_0603 at 655.804 kb on + strand, within Psest_0603 at 655.804 kb on + strand, within Psest_0603 at 655.804 kb on + strand, within Psest_0603 at 655.804 kb on + strand, within Psest_0603 at 655.804 kb on + strand, within Psest_0603 at 655.804 kb on + strand, within Psest_0603 at 655.804 kb on + strand, within Psest_0603 at 655.804 kb on + strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.806 kb on + strand, within Psest_0603 at 655.806 kb on + strand, within Psest_0603 at 655.806 kb on + strand, within Psest_0603 at 655.807 kb on - strand, within Psest_0603 at 655.807 kb on - strand, within Psest_0603 at 655.807 kb on - strand, within Psest_0603 at 655.807 kb on - strand, within Psest_0603 at 655.828 kb on + strand, within Psest_0603 at 655.828 kb on + strand, within Psest_0603 at 655.858 kb on + strand, within Psest_0603 at 655.858 kb on + strand, within Psest_0603 at 655.868 kb on + strand, within Psest_0603 at 655.868 kb on + strand, within Psest_0603 at 655.869 kb on - strand, within Psest_0603 at 655.869 kb on - strand, within Psest_0603 at 656.049 kb on + strand, within Psest_0603 at 656.049 kb on + strand, within Psest_0603 at 656.066 kb on + strand, within Psest_0603 at 656.087 kb on + strand at 656.088 kb on - strand at 656.088 kb on - strand at 656.167 kb on - strand at 656.167 kb on - strand at 656.255 kb on + strand at 656.256 kb on - strand at 656.256 kb on - strand at 656.302 kb on + strand at 656.321 kb on + strand at 656.321 kb on + strand at 656.321 kb on + strand at 656.328 kb on + strand at 656.328 kb on + strand at 656.328 kb on + strand at 656.398 kb on + strand at 656.398 kb on + strand at 656.398 kb on + strand at 656.399 kb on - strand at 656.399 kb on - strand at 656.412 kb on + strand at 656.412 kb on + strand at 656.412 kb on + strand at 656.412 kb on + strand at 656.413 kb on - strand at 656.427 kb on - strand at 656.478 kb on + strand at 656.478 kb on + strand at 656.478 kb on + strand at 656.479 kb on - strand at 656.479 kb on - strand at 656.479 kb on - strand at 656.479 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 653,536 + -1.0 653,590 + -2.0 653,590 + -0.2 653,591 - -0.3 653,605 + -1.3 653,673 - -0.3 653,673 - -2.2 653,717 + -0.5 653,717 + -1.3 653,730 - -2.2 653,758 - -2.0 653,808 + -0.3 653,808 + -0.8 653,808 + +0.0 653,808 + +0.5 653,808 + -1.0 653,808 + -1.1 653,808 + -0.5 653,809 - -1.3 653,809 - -0.7 653,809 - +0.6 653,809 - -1.2 653,809 - -0.3 653,809 - -0.7 653,810 + +0.8 653,811 - -1.0 653,811 - -1.3 653,811 - -2.1 653,811 - -1.3 653,811 - +0.5 653,811 - -1.1 653,811 - -3.7 653,840 + -0.9 653,847 + +0.2 653,847 + +0.2 653,847 + -0.3 653,848 - -1.4 653,848 - -0.4 653,848 - -0.1 653,870 + +0.3 653,870 + -1.4 653,882 + -0.2 653,882 + -0.1 653,882 + -0.3 653,882 + +0.6 653,883 - -1.9 653,886 + -1.4 653,886 + +0.6 653,886 + +1.5 653,886 + +0.3 653,886 + +0.9 653,886 + +0.1 653,886 + +0.8 653,886 + +0.8 653,886 + +1.3 653,886 + +0.4 653,886 + +0.9 653,887 - +0.1 653,887 - +0.6 653,887 - -2.7 653,887 - -0.2 653,887 - -0.5 653,887 - -1.9 653,913 - -0.7 653,913 - -0.7 653,925 + -2.9 653,940 + -3.2 653,945 + -2.4 653,946 - -3.7 653,946 - +0.3 653,946 - -0.6 653,946 - -0.4 653,946 - -1.3 654,018 + -1.0 654,018 + -2.3 654,019 - +0.3 654,034 - -0.5 654,062 - -1.0 654,068 + -1.6 654,079 + -0.3 654,191 + -3.4 654,191 + -0.7 654,195 + -1.4 654,195 + -0.6 654,195 + -0.4 654,196 - +0.2 654,196 - -1.1 654,197 + -1.7 654,198 - -1.4 654,215 + Psest_0601 0.17 -0.2 654,232 + Psest_0601 0.31 -2.5 654,232 + Psest_0601 0.31 -1.9 654,232 + Psest_0601 0.31 -1.3 654,406 + -1.1 654,406 + -0.1 654,407 - -1.1 654,407 - +0.8 654,460 + -1.3 654,474 + -2.5 654,534 - -2.9 654,534 - -1.1 654,534 - -2.0 654,594 + +0.0 654,594 + -1.0 654,595 - -2.4 654,595 - -0.0 654,619 + -1.2 654,754 + Psest_0602 0.23 -0.2 654,774 + Psest_0602 0.25 -1.6 654,775 - Psest_0602 0.25 -0.8 654,794 - Psest_0602 0.27 -1.6 654,794 - Psest_0602 0.27 -1.1 654,794 - Psest_0602 0.27 -1.3 654,807 + Psest_0602 0.28 +0.3 654,857 + Psest_0602 0.33 -1.0 654,871 + Psest_0602 0.34 -1.0 654,874 + Psest_0602 0.34 -1.2 654,874 + Psest_0602 0.34 -0.7 654,875 - Psest_0602 0.34 -1.9 654,981 + Psest_0602 0.45 -0.7 654,981 + Psest_0602 0.45 -2.5 654,981 + Psest_0602 0.45 -3.1 654,989 + Psest_0602 0.45 -0.5 654,989 + Psest_0602 0.45 -1.9 654,990 - Psest_0602 0.45 -0.0 655,038 + Psest_0602 0.50 -1.3 655,038 + Psest_0602 0.50 -1.8 655,038 + Psest_0602 0.50 -1.1 655,038 + Psest_0602 0.50 -0.7 655,038 + Psest_0602 0.50 -0.8 655,039 - Psest_0602 0.50 -2.5 655,039 - Psest_0602 0.50 -2.5 655,084 + Psest_0602 0.54 -0.8 655,101 + Psest_0602 0.56 -0.8 655,102 - Psest_0602 0.56 -3.0 655,114 - Psest_0602 0.57 -0.3 655,203 - Psest_0602 0.66 -0.8 655,279 + Psest_0602 0.73 +0.5 655,279 + Psest_0602 0.73 +0.2 655,360 + Psest_0602 0.81 -1.6 655,392 + Psest_0602 0.84 -1.1 655,392 + Psest_0602 0.84 -0.8 655,451 - Psest_0602 0.89 -0.5 655,483 + -0.3 655,486 + -0.9 655,509 - -2.3 655,546 + +0.7 655,567 + -1.2 655,568 - -2.7 655,626 - -0.4 655,804 + Psest_0603 0.28 +0.0 655,804 + Psest_0603 0.28 -0.4 655,804 + Psest_0603 0.28 -1.0 655,804 + Psest_0603 0.28 +1.9 655,804 + Psest_0603 0.28 +1.2 655,804 + Psest_0603 0.28 +1.6 655,804 + Psest_0603 0.28 -0.6 655,804 + Psest_0603 0.28 +1.7 655,804 + Psest_0603 0.28 -0.1 655,804 + Psest_0603 0.28 +0.0 655,804 + Psest_0603 0.28 -0.8 655,804 + Psest_0603 0.28 -0.2 655,804 + Psest_0603 0.28 -0.2 655,805 - Psest_0603 0.29 +0.2 655,805 - Psest_0603 0.29 -0.5 655,805 - Psest_0603 0.29 -0.3 655,805 - Psest_0603 0.29 -0.9 655,805 - Psest_0603 0.29 -0.1 655,805 - Psest_0603 0.29 +0.3 655,805 - Psest_0603 0.29 -1.3 655,805 - Psest_0603 0.29 +0.6 655,805 - Psest_0603 0.29 -1.1 655,805 - Psest_0603 0.29 -1.3 655,805 - Psest_0603 0.29 -1.8 655,805 - Psest_0603 0.29 -3.3 655,805 - Psest_0603 0.29 -0.6 655,806 + Psest_0603 0.29 -1.2 655,806 + Psest_0603 0.29 -1.5 655,806 + Psest_0603 0.29 -1.4 655,807 - Psest_0603 0.29 -2.8 655,807 - Psest_0603 0.29 -0.4 655,807 - Psest_0603 0.29 +0.9 655,807 - Psest_0603 0.29 -1.7 655,828 + Psest_0603 0.34 +0.0 655,828 + Psest_0603 0.34 -0.4 655,858 + Psest_0603 0.41 +2.4 655,858 + Psest_0603 0.41 -0.9 655,868 + Psest_0603 0.43 -0.7 655,868 + Psest_0603 0.43 +2.1 655,869 - Psest_0603 0.43 -1.6 655,869 - Psest_0603 0.43 -1.3 656,049 + Psest_0603 0.84 +0.2 656,049 + Psest_0603 0.84 +0.2 656,066 + Psest_0603 0.87 +0.6 656,087 + +1.1 656,088 - +1.7 656,088 - +0.3 656,167 - +2.4 656,167 - +2.1 656,255 + -1.0 656,256 - +0.4 656,256 - +1.3 656,302 + -0.1 656,321 + -1.5 656,321 + -0.5 656,321 + -1.2 656,328 + -1.1 656,328 + -0.5 656,328 + -0.9 656,398 + +1.2 656,398 + +0.3 656,398 + -0.6 656,399 - +0.6 656,399 - +0.2 656,412 + -0.9 656,412 + +0.4 656,412 + -1.7 656,412 + -1.5 656,413 - -1.1 656,427 - -0.0 656,478 + -1.3 656,478 + -2.6 656,478 + +0.1 656,479 - -1.2 656,479 - -1.3 656,479 - -4.0 656,479 - -0.7
Or see this region's nucleotide sequence