Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0578 and Psest_0581 are separated by 636 nucleotides Psest_0581 and Psest_0582 are separated by 424 nucleotides Psest_0582 and Psest_0583 are separated by 317 nucleotides
Psest_0578: Psest_0578 - hypothetical protein, at 630,773 to 631,219
_0578
Psest_0581: Psest_0581 - heavy metal response regulator, at 631,856 to 632,536
_0581
Psest_0582: Psest_0582 - hypothetical protein, at 632,961 to 633,170
_0582
Psest_0583: Psest_0583 - copper-resistance protein, CopA family, at 633,488 to 635,329
_0583
Position (kb) 631
632
633 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 630.858 kb on + strand, within Psest_0578 at 630.858 kb on + strand, within Psest_0578 at 630.858 kb on + strand, within Psest_0578 at 630.858 kb on + strand, within Psest_0578 at 630.859 kb on - strand, within Psest_0578 at 630.859 kb on - strand, within Psest_0578 at 630.859 kb on - strand, within Psest_0578 at 630.859 kb on - strand, within Psest_0578 at 630.882 kb on - strand, within Psest_0578 at 630.882 kb on - strand, within Psest_0578 at 630.882 kb on - strand, within Psest_0578 at 630.930 kb on + strand, within Psest_0578 at 630.966 kb on + strand, within Psest_0578 at 630.967 kb on - strand, within Psest_0578 at 631.024 kb on + strand, within Psest_0578 at 631.024 kb on + strand, within Psest_0578 at 631.024 kb on + strand, within Psest_0578 at 631.025 kb on - strand, within Psest_0578 at 631.137 kb on - strand, within Psest_0578 at 631.137 kb on - strand, within Psest_0578 at 631.174 kb on + strand, within Psest_0578 at 631.174 kb on + strand, within Psest_0578 at 631.174 kb on + strand, within Psest_0578 at 631.174 kb on + strand, within Psest_0578 at 631.175 kb on - strand at 631.175 kb on - strand at 631.175 kb on - strand at 631.178 kb on - strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.204 kb on - strand at 631.204 kb on - strand at 631.204 kb on - strand at 631.204 kb on - strand at 631.204 kb on - strand at 631.204 kb on - strand at 631.204 kb on - strand at 631.204 kb on - strand at 631.204 kb on - strand at 631.204 kb on - strand at 631.204 kb on - strand at 631.204 kb on - strand at 631.204 kb on - strand at 631.244 kb on + strand at 631.353 kb on + strand at 631.353 kb on + strand at 631.354 kb on - strand at 631.354 kb on - strand at 631.354 kb on - strand at 631.416 kb on - strand at 631.527 kb on - strand at 631.527 kb on - strand at 631.527 kb on - strand at 631.527 kb on - strand at 631.527 kb on - strand at 631.527 kb on - strand at 631.534 kb on - strand at 631.534 kb on - strand at 631.577 kb on + strand at 631.577 kb on + strand at 631.577 kb on + strand at 631.577 kb on + strand at 631.687 kb on + strand at 631.687 kb on + strand at 631.687 kb on + strand at 631.688 kb on - strand at 631.705 kb on + strand at 631.714 kb on - strand at 631.714 kb on - strand at 631.882 kb on - strand at 631.904 kb on + strand at 631.904 kb on + strand at 631.904 kb on + strand at 631.905 kb on - strand at 631.912 kb on + strand at 631.912 kb on + strand at 631.912 kb on + strand at 631.912 kb on + strand at 631.913 kb on - strand at 631.913 kb on - strand at 631.913 kb on - strand at 631.913 kb on - strand at 631.913 kb on - strand at 631.913 kb on - strand at 631.913 kb on - strand at 631.913 kb on - strand at 631.913 kb on - strand at 632.001 kb on - strand, within Psest_0581 at 632.001 kb on - strand, within Psest_0581 at 632.051 kb on + strand, within Psest_0581 at 632.052 kb on - strand, within Psest_0581 at 632.052 kb on - strand, within Psest_0581 at 632.054 kb on + strand, within Psest_0581 at 632.054 kb on + strand, within Psest_0581 at 632.054 kb on + strand, within Psest_0581 at 632.054 kb on + strand, within Psest_0581 at 632.055 kb on - strand, within Psest_0581 at 632.055 kb on - strand, within Psest_0581 at 632.055 kb on - strand, within Psest_0581 at 632.055 kb on - strand, within Psest_0581 at 632.084 kb on + strand, within Psest_0581 at 632.084 kb on + strand, within Psest_0581 at 632.085 kb on - strand, within Psest_0581 at 632.085 kb on - strand, within Psest_0581 at 632.085 kb on - strand, within Psest_0581 at 632.085 kb on - strand, within Psest_0581 at 632.085 kb on - strand, within Psest_0581 at 632.091 kb on - strand, within Psest_0581 at 632.091 kb on - strand, within Psest_0581 at 632.091 kb on - strand, within Psest_0581 at 632.091 kb on - strand, within Psest_0581 at 632.110 kb on + strand, within Psest_0581 at 632.110 kb on + strand, within Psest_0581 at 632.176 kb on + strand, within Psest_0581 at 632.176 kb on + strand, within Psest_0581 at 632.177 kb on - strand, within Psest_0581 at 632.177 kb on - strand, within Psest_0581 at 632.197 kb on + strand, within Psest_0581 at 632.197 kb on + strand, within Psest_0581 at 632.197 kb on + strand, within Psest_0581 at 632.349 kb on - strand, within Psest_0581 at 632.349 kb on - strand, within Psest_0581 at 632.387 kb on + strand, within Psest_0581 at 632.387 kb on + strand, within Psest_0581 at 632.387 kb on + strand, within Psest_0581 at 632.388 kb on - strand, within Psest_0581 at 632.388 kb on - strand, within Psest_0581 at 632.403 kb on + strand, within Psest_0581 at 632.403 kb on + strand, within Psest_0581 at 632.403 kb on + strand, within Psest_0581 at 632.403 kb on + strand, within Psest_0581 at 632.403 kb on + strand, within Psest_0581 at 632.404 kb on - strand, within Psest_0581 at 632.404 kb on - strand, within Psest_0581 at 632.404 kb on - strand, within Psest_0581 at 632.404 kb on - strand, within Psest_0581 at 632.404 kb on - strand, within Psest_0581 at 632.404 kb on - strand, within Psest_0581 at 632.410 kb on + strand, within Psest_0581 at 632.410 kb on + strand, within Psest_0581 at 632.410 kb on + strand, within Psest_0581 at 632.411 kb on - strand, within Psest_0581 at 632.411 kb on - strand, within Psest_0581 at 632.411 kb on - strand, within Psest_0581 at 632.411 kb on - strand, within Psest_0581 at 632.411 kb on - strand, within Psest_0581 at 632.490 kb on - strand at 632.490 kb on - strand at 632.490 kb on - strand at 632.490 kb on - strand at 632.493 kb on + strand at 632.494 kb on - strand at 632.494 kb on - strand at 632.494 kb on - strand at 632.494 kb on - strand at 632.494 kb on - strand at 632.494 kb on - strand at 632.494 kb on - strand at 632.494 kb on - strand at 632.494 kb on - strand at 632.542 kb on + strand at 632.543 kb on - strand at 632.543 kb on - strand at 632.595 kb on - strand at 632.595 kb on - strand at 632.600 kb on - strand at 632.609 kb on + strand at 632.609 kb on + strand at 632.609 kb on + strand at 632.609 kb on + strand at 632.609 kb on + strand at 632.609 kb on + strand at 632.610 kb on - strand at 632.610 kb on - strand at 632.639 kb on + strand at 632.652 kb on + strand at 632.652 kb on + strand at 632.652 kb on + strand at 632.709 kb on + strand at 632.719 kb on + strand at 632.757 kb on + strand at 632.758 kb on - strand at 632.758 kb on - strand at 632.758 kb on - strand at 632.758 kb on - strand at 632.758 kb on - strand at 632.789 kb on + strand at 632.820 kb on + strand at 632.820 kb on + strand at 632.820 kb on + strand at 632.821 kb on - strand at 632.821 kb on - strand at 632.821 kb on - strand at 632.821 kb on - strand at 632.821 kb on - strand at 632.841 kb on + strand at 632.849 kb on - strand at 632.879 kb on - strand at 632.883 kb on + strand at 632.883 kb on + strand at 632.883 kb on + strand at 632.884 kb on - strand at 632.910 kb on - strand at 632.910 kb on - strand at 632.910 kb on - strand at 632.913 kb on + strand at 632.913 kb on + strand at 632.913 kb on + strand at 632.914 kb on - strand at 632.952 kb on + strand at 632.960 kb on - strand at 632.986 kb on + strand, within Psest_0582 at 633.015 kb on + strand, within Psest_0582 at 633.016 kb on - strand, within Psest_0582 at 633.016 kb on - strand, within Psest_0582 at 633.016 kb on - strand, within Psest_0582 at 633.016 kb on - strand, within Psest_0582 at 633.044 kb on + strand, within Psest_0582 at 633.045 kb on - strand, within Psest_0582 at 633.045 kb on - strand, within Psest_0582 at 633.056 kb on + strand, within Psest_0582 at 633.086 kb on + strand, within Psest_0582 at 633.124 kb on + strand, within Psest_0582 at 633.161 kb on + strand at 633.209 kb on - strand at 633.316 kb on - strand at 633.322 kb on - strand at 633.322 kb on - strand at 633.348 kb on + strand at 633.359 kb on + strand at 633.359 kb on + strand at 633.360 kb on - strand at 633.364 kb on - strand at 633.369 kb on + strand at 633.370 kb on - strand at 633.388 kb on - strand at 633.411 kb on + strand at 633.467 kb on + strand at 633.467 kb on + strand at 633.467 kb on + strand at 633.467 kb on + strand at 633.468 kb on - strand at 633.468 kb on - strand at 633.483 kb on + strand at 633.483 kb on + strand at 633.483 kb on + strand at 633.483 kb on + strand at 633.483 kb on + strand at 633.483 kb on + strand at 633.483 kb on + strand at 633.484 kb on - strand at 633.484 kb on - strand at 633.484 kb on - strand at 633.496 kb on + strand at 633.496 kb on + strand at 633.496 kb on + strand at 633.496 kb on + strand at 633.496 kb on + strand at 633.496 kb on + strand at 633.497 kb on - strand at 633.505 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 630,858 + Psest_0578 0.19 +0.2 630,858 + Psest_0578 0.19 -0.8 630,858 + Psest_0578 0.19 -2.3 630,858 + Psest_0578 0.19 -3.0 630,859 - Psest_0578 0.19 -1.0 630,859 - Psest_0578 0.19 -0.3 630,859 - Psest_0578 0.19 -1.8 630,859 - Psest_0578 0.19 -3.4 630,882 - Psest_0578 0.24 -0.6 630,882 - Psest_0578 0.24 -1.4 630,882 - Psest_0578 0.24 -0.0 630,930 + Psest_0578 0.35 -1.3 630,966 + Psest_0578 0.43 +2.2 630,967 - Psest_0578 0.43 -2.3 631,024 + Psest_0578 0.56 -1.9 631,024 + Psest_0578 0.56 -0.7 631,024 + Psest_0578 0.56 -1.6 631,025 - Psest_0578 0.56 -0.9 631,137 - Psest_0578 0.81 -3.7 631,137 - Psest_0578 0.81 +0.1 631,174 + Psest_0578 0.90 -1.7 631,174 + Psest_0578 0.90 -0.6 631,174 + Psest_0578 0.90 -0.1 631,174 + Psest_0578 0.90 -3.2 631,175 - -0.9 631,175 - -1.0 631,175 - -0.6 631,178 - -2.9 631,203 + -1.3 631,203 + -1.8 631,203 + -0.7 631,203 + +0.9 631,203 + +0.1 631,203 + -2.3 631,203 + -2.0 631,203 + -1.4 631,203 + -0.1 631,203 + -1.3 631,203 + -0.3 631,203 + +0.1 631,203 + -0.7 631,203 + -1.6 631,204 - -0.8 631,204 - -2.3 631,204 - +0.2 631,204 - -1.6 631,204 - -0.5 631,204 - +0.9 631,204 - -0.3 631,204 - -2.2 631,204 - -1.2 631,204 - -3.1 631,204 - -0.7 631,204 - -1.2 631,204 - -0.5 631,244 + +0.9 631,353 + +0.5 631,353 + -1.5 631,354 - +0.7 631,354 - -0.9 631,354 - -1.3 631,416 - -1.6 631,527 - -2.4 631,527 - -0.3 631,527 - -1.1 631,527 - -0.8 631,527 - -0.5 631,527 - -1.1 631,534 - -1.8 631,534 - -2.7 631,577 + -1.8 631,577 + -1.6 631,577 + -0.4 631,577 + -2.3 631,687 + -3.6 631,687 + -1.6 631,687 + -1.6 631,688 - -1.1 631,705 + +0.8 631,714 - +0.5 631,714 - -1.7 631,882 - -0.5 631,904 + -1.4 631,904 + -0.6 631,904 + -2.4 631,905 - -1.4 631,912 + -1.4 631,912 + -2.1 631,912 + -0.8 631,912 + -3.0 631,913 - -0.2 631,913 - +0.2 631,913 - -1.0 631,913 - -1.0 631,913 - -2.9 631,913 - -0.8 631,913 - -0.9 631,913 - -0.9 631,913 - -1.2 632,001 - Psest_0581 0.21 -2.3 632,001 - Psest_0581 0.21 -2.5 632,051 + Psest_0581 0.29 -2.1 632,052 - Psest_0581 0.29 +1.7 632,052 - Psest_0581 0.29 -2.9 632,054 + Psest_0581 0.29 -1.0 632,054 + Psest_0581 0.29 -1.5 632,054 + Psest_0581 0.29 -0.2 632,054 + Psest_0581 0.29 -1.1 632,055 - Psest_0581 0.29 -2.3 632,055 - Psest_0581 0.29 +0.0 632,055 - Psest_0581 0.29 -0.3 632,055 - Psest_0581 0.29 -0.9 632,084 + Psest_0581 0.33 -1.7 632,084 + Psest_0581 0.33 -2.0 632,085 - Psest_0581 0.34 -2.5 632,085 - Psest_0581 0.34 -0.2 632,085 - Psest_0581 0.34 -1.5 632,085 - Psest_0581 0.34 +1.2 632,085 - Psest_0581 0.34 -0.2 632,091 - Psest_0581 0.35 +0.4 632,091 - Psest_0581 0.35 -0.3 632,091 - Psest_0581 0.35 -0.7 632,091 - Psest_0581 0.35 -1.4 632,110 + Psest_0581 0.37 -2.1 632,110 + Psest_0581 0.37 -0.8 632,176 + Psest_0581 0.47 -0.5 632,176 + Psest_0581 0.47 -1.8 632,177 - Psest_0581 0.47 -0.1 632,177 - Psest_0581 0.47 -1.8 632,197 + Psest_0581 0.50 -1.5 632,197 + Psest_0581 0.50 +0.2 632,197 + Psest_0581 0.50 -0.5 632,349 - Psest_0581 0.72 -0.0 632,349 - Psest_0581 0.72 -0.5 632,387 + Psest_0581 0.78 -0.3 632,387 + Psest_0581 0.78 +0.9 632,387 + Psest_0581 0.78 -0.9 632,388 - Psest_0581 0.78 -1.5 632,388 - Psest_0581 0.78 +1.3 632,403 + Psest_0581 0.80 +0.7 632,403 + Psest_0581 0.80 -1.6 632,403 + Psest_0581 0.80 +1.1 632,403 + Psest_0581 0.80 +0.8 632,403 + Psest_0581 0.80 -1.1 632,404 - Psest_0581 0.80 -4.0 632,404 - Psest_0581 0.80 +0.2 632,404 - Psest_0581 0.80 +0.8 632,404 - Psest_0581 0.80 +0.2 632,404 - Psest_0581 0.80 -0.3 632,404 - Psest_0581 0.80 -1.4 632,410 + Psest_0581 0.81 -0.8 632,410 + Psest_0581 0.81 -0.5 632,410 + Psest_0581 0.81 -1.4 632,411 - Psest_0581 0.81 -2.5 632,411 - Psest_0581 0.81 -0.9 632,411 - Psest_0581 0.81 -0.7 632,411 - Psest_0581 0.81 +1.1 632,411 - Psest_0581 0.81 -1.6 632,490 - -0.0 632,490 - -2.2 632,490 - -2.4 632,490 - -1.7 632,493 + +0.2 632,494 - -2.3 632,494 - -0.5 632,494 - -1.0 632,494 - -0.5 632,494 - -0.1 632,494 - -1.8 632,494 - +0.0 632,494 - +0.0 632,494 - -1.4 632,542 + +0.6 632,543 - -1.4 632,543 - -0.5 632,595 - +0.2 632,595 - -2.4 632,600 - -1.1 632,609 + +0.7 632,609 + +0.6 632,609 + -1.5 632,609 + +0.3 632,609 + -0.5 632,609 + +0.6 632,610 - -1.4 632,610 - -0.9 632,639 + -0.3 632,652 + +0.3 632,652 + +0.4 632,652 + -0.4 632,709 + +0.3 632,719 + -1.4 632,757 + -1.6 632,758 - -2.0 632,758 - -0.2 632,758 - +1.3 632,758 - -0.3 632,758 - -1.6 632,789 + -1.3 632,820 + -0.8 632,820 + -1.7 632,820 + +0.9 632,821 - -1.1 632,821 - -1.1 632,821 - -0.2 632,821 - -0.3 632,821 - -0.2 632,841 + -1.9 632,849 - -1.5 632,879 - -1.3 632,883 + -1.1 632,883 + -1.3 632,883 + -1.5 632,884 - -0.4 632,910 - -0.1 632,910 - -2.5 632,910 - -0.6 632,913 + +1.8 632,913 + -1.4 632,913 + -0.9 632,914 - +1.3 632,952 + -0.7 632,960 - +0.2 632,986 + Psest_0582 0.12 -0.0 633,015 + Psest_0582 0.26 -0.8 633,016 - Psest_0582 0.26 -1.1 633,016 - Psest_0582 0.26 -0.7 633,016 - Psest_0582 0.26 -0.1 633,016 - Psest_0582 0.26 -2.2 633,044 + Psest_0582 0.40 -2.1 633,045 - Psest_0582 0.40 -0.2 633,045 - Psest_0582 0.40 -0.8 633,056 + Psest_0582 0.45 -1.2 633,086 + Psest_0582 0.60 -1.2 633,124 + Psest_0582 0.78 -0.9 633,161 + -0.2 633,209 - -0.3 633,316 - +0.4 633,322 - -2.0 633,322 - +0.4 633,348 + -0.8 633,359 + -1.6 633,359 + -1.2 633,360 - -1.5 633,364 - -0.7 633,369 + +1.7 633,370 - -1.9 633,388 - -1.7 633,411 + -0.6 633,467 + -0.9 633,467 + -1.8 633,467 + -0.4 633,467 + -1.5 633,468 - -0.2 633,468 - +0.7 633,483 + +0.4 633,483 + +0.3 633,483 + +0.4 633,483 + +0.2 633,483 + -1.5 633,483 + -1.2 633,483 + +0.9 633,484 - -1.3 633,484 - -0.9 633,484 - -2.8 633,496 + +1.6 633,496 + -0.6 633,496 + +1.5 633,496 + +0.3 633,496 + -0.2 633,496 + +0.1 633,497 - -0.3 633,505 + +0.7
Or see this region's nucleotide sequence