Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0575 and Psest_0576 are separated by 27 nucleotides Psest_0576 and Psest_0577 are separated by 166 nucleotides Psest_0577 and Psest_0578 are separated by 104 nucleotides
Psest_0575: Psest_0575 - HrpA-like helicases, at 629,120 to 629,584
_0575
Psest_0576: Psest_0576 - hypothetical protein, at 629,612 to 630,211
_0576
Psest_0577: Psest_0577 - Predicted transcriptional regulators, at 630,378 to 630,668
_0577
Psest_0578: Psest_0578 - hypothetical protein, at 630,773 to 631,219
_0578
Position (kb) 630
631 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 629.508 kb on + strand, within Psest_0575 at 629.583 kb on - strand at 629.583 kb on - strand at 629.604 kb on - strand at 629.604 kb on - strand at 629.710 kb on + strand, within Psest_0576 at 629.710 kb on + strand, within Psest_0576 at 629.731 kb on + strand, within Psest_0576 at 629.757 kb on + strand, within Psest_0576 at 629.757 kb on + strand, within Psest_0576 at 629.757 kb on + strand, within Psest_0576 at 629.757 kb on + strand, within Psest_0576 at 629.757 kb on + strand, within Psest_0576 at 629.757 kb on + strand, within Psest_0576 at 629.757 kb on + strand, within Psest_0576 at 629.757 kb on + strand, within Psest_0576 at 629.757 kb on + strand, within Psest_0576 at 629.758 kb on - strand, within Psest_0576 at 629.758 kb on - strand, within Psest_0576 at 629.758 kb on - strand, within Psest_0576 at 629.758 kb on - strand, within Psest_0576 at 629.758 kb on - strand, within Psest_0576 at 629.758 kb on - strand, within Psest_0576 at 629.758 kb on - strand, within Psest_0576 at 629.758 kb on - strand, within Psest_0576 at 629.760 kb on + strand, within Psest_0576 at 629.760 kb on + strand, within Psest_0576 at 629.760 kb on + strand, within Psest_0576 at 629.760 kb on + strand, within Psest_0576 at 629.760 kb on + strand, within Psest_0576 at 629.760 kb on + strand, within Psest_0576 at 629.760 kb on + strand, within Psest_0576 at 629.761 kb on - strand, within Psest_0576 at 629.770 kb on + strand, within Psest_0576 at 629.771 kb on - strand, within Psest_0576 at 629.783 kb on + strand, within Psest_0576 at 629.783 kb on + strand, within Psest_0576 at 629.819 kb on + strand, within Psest_0576 at 629.819 kb on + strand, within Psest_0576 at 629.820 kb on - strand, within Psest_0576 at 629.820 kb on - strand, within Psest_0576 at 629.866 kb on + strand, within Psest_0576 at 629.867 kb on - strand, within Psest_0576 at 629.880 kb on + strand, within Psest_0576 at 629.880 kb on + strand, within Psest_0576 at 629.881 kb on - strand, within Psest_0576 at 629.945 kb on + strand, within Psest_0576 at 629.945 kb on + strand, within Psest_0576 at 629.946 kb on - strand, within Psest_0576 at 629.946 kb on - strand, within Psest_0576 at 630.024 kb on + strand, within Psest_0576 at 630.024 kb on + strand, within Psest_0576 at 630.024 kb on + strand, within Psest_0576 at 630.024 kb on + strand, within Psest_0576 at 630.025 kb on - strand, within Psest_0576 at 630.025 kb on - strand, within Psest_0576 at 630.025 kb on - strand, within Psest_0576 at 630.025 kb on - strand, within Psest_0576 at 630.048 kb on + strand, within Psest_0576 at 630.048 kb on + strand, within Psest_0576 at 630.048 kb on + strand, within Psest_0576 at 630.048 kb on + strand, within Psest_0576 at 630.048 kb on + strand, within Psest_0576 at 630.048 kb on + strand, within Psest_0576 at 630.048 kb on + strand, within Psest_0576 at 630.049 kb on - strand, within Psest_0576 at 630.049 kb on - strand, within Psest_0576 at 630.049 kb on - strand, within Psest_0576 at 630.049 kb on - strand, within Psest_0576 at 630.049 kb on - strand, within Psest_0576 at 630.049 kb on - strand, within Psest_0576 at 630.049 kb on - strand, within Psest_0576 at 630.049 kb on - strand, within Psest_0576 at 630.049 kb on - strand, within Psest_0576 at 630.107 kb on - strand, within Psest_0576 at 630.110 kb on - strand, within Psest_0576 at 630.188 kb on + strand at 630.188 kb on + strand at 630.189 kb on - strand at 630.189 kb on - strand at 630.194 kb on - strand at 630.211 kb on + strand at 630.211 kb on + strand at 630.211 kb on + strand at 630.211 kb on + strand at 630.211 kb on + strand at 630.211 kb on + strand at 630.211 kb on + strand at 630.211 kb on + strand at 630.211 kb on + strand at 630.211 kb on + strand at 630.211 kb on + strand at 630.211 kb on + strand at 630.211 kb on + strand at 630.211 kb on + strand at 630.211 kb on + strand at 630.211 kb on + strand at 630.211 kb on + strand at 630.212 kb on - strand at 630.212 kb on - strand at 630.212 kb on - strand at 630.212 kb on - strand at 630.212 kb on - strand at 630.212 kb on - strand at 630.212 kb on - strand at 630.212 kb on - strand at 630.212 kb on - strand at 630.212 kb on - strand at 630.212 kb on - strand at 630.212 kb on - strand at 630.212 kb on - strand at 630.212 kb on - strand at 630.212 kb on - strand at 630.212 kb on - strand at 630.212 kb on - strand at 630.212 kb on - strand at 630.212 kb on - strand at 630.212 kb on - strand at 630.212 kb on - strand at 630.239 kb on + strand at 630.262 kb on + strand at 630.262 kb on + strand at 630.262 kb on + strand at 630.262 kb on + strand at 630.262 kb on + strand at 630.263 kb on - strand at 630.264 kb on + strand at 630.264 kb on + strand at 630.375 kb on + strand at 630.466 kb on + strand, within Psest_0577 at 630.466 kb on + strand, within Psest_0577 at 630.466 kb on + strand, within Psest_0577 at 630.466 kb on + strand, within Psest_0577 at 630.466 kb on + strand, within Psest_0577 at 630.466 kb on + strand, within Psest_0577 at 630.466 kb on + strand, within Psest_0577 at 630.466 kb on + strand, within Psest_0577 at 630.466 kb on + strand, within Psest_0577 at 630.467 kb on - strand, within Psest_0577 at 630.467 kb on - strand, within Psest_0577 at 630.467 kb on - strand, within Psest_0577 at 630.467 kb on - strand, within Psest_0577 at 630.467 kb on - strand, within Psest_0577 at 630.467 kb on - strand, within Psest_0577 at 630.467 kb on - strand, within Psest_0577 at 630.467 kb on - strand, within Psest_0577 at 630.467 kb on - strand, within Psest_0577 at 630.467 kb on - strand, within Psest_0577 at 630.575 kb on + strand, within Psest_0577 at 630.575 kb on + strand, within Psest_0577 at 630.575 kb on + strand, within Psest_0577 at 630.575 kb on + strand, within Psest_0577 at 630.575 kb on + strand, within Psest_0577 at 630.576 kb on - strand, within Psest_0577 at 630.576 kb on - strand, within Psest_0577 at 630.576 kb on - strand, within Psest_0577 at 630.617 kb on + strand, within Psest_0577 at 630.618 kb on - strand, within Psest_0577 at 630.748 kb on - strand at 630.848 kb on + strand, within Psest_0578 at 630.848 kb on + strand, within Psest_0578 at 630.848 kb on + strand, within Psest_0578 at 630.848 kb on + strand, within Psest_0578 at 630.848 kb on + strand, within Psest_0578 at 630.848 kb on + strand, within Psest_0578 at 630.848 kb on + strand, within Psest_0578 at 630.848 kb on + strand, within Psest_0578 at 630.848 kb on + strand, within Psest_0578 at 630.848 kb on + strand, within Psest_0578 at 630.848 kb on + strand, within Psest_0578 at 630.848 kb on + strand, within Psest_0578 at 630.848 kb on + strand, within Psest_0578 at 630.848 kb on + strand, within Psest_0578 at 630.848 kb on + strand, within Psest_0578 at 630.848 kb on + strand, within Psest_0578 at 630.848 kb on + strand, within Psest_0578 at 630.849 kb on - strand, within Psest_0578 at 630.849 kb on - strand, within Psest_0578 at 630.849 kb on - strand, within Psest_0578 at 630.849 kb on - strand, within Psest_0578 at 630.849 kb on - strand, within Psest_0578 at 630.849 kb on - strand, within Psest_0578 at 630.858 kb on + strand, within Psest_0578 at 630.858 kb on + strand, within Psest_0578 at 630.858 kb on + strand, within Psest_0578 at 630.858 kb on + strand, within Psest_0578 at 630.859 kb on - strand, within Psest_0578 at 630.859 kb on - strand, within Psest_0578 at 630.859 kb on - strand, within Psest_0578 at 630.859 kb on - strand, within Psest_0578 at 630.882 kb on - strand, within Psest_0578 at 630.882 kb on - strand, within Psest_0578 at 630.882 kb on - strand, within Psest_0578 at 630.930 kb on + strand, within Psest_0578 at 630.966 kb on + strand, within Psest_0578 at 630.967 kb on - strand, within Psest_0578 at 631.024 kb on + strand, within Psest_0578 at 631.024 kb on + strand, within Psest_0578 at 631.024 kb on + strand, within Psest_0578 at 631.025 kb on - strand, within Psest_0578 at 631.137 kb on - strand, within Psest_0578 at 631.137 kb on - strand, within Psest_0578 at 631.174 kb on + strand, within Psest_0578 at 631.174 kb on + strand, within Psest_0578 at 631.174 kb on + strand, within Psest_0578 at 631.174 kb on + strand, within Psest_0578 at 631.175 kb on - strand at 631.175 kb on - strand at 631.175 kb on - strand at 631.178 kb on - strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.204 kb on - strand at 631.204 kb on - strand at 631.204 kb on - strand at 631.204 kb on - strand at 631.204 kb on - strand at 631.204 kb on - strand at 631.204 kb on - strand at 631.204 kb on - strand at 631.204 kb on - strand at 631.204 kb on - strand at 631.204 kb on - strand at 631.204 kb on - strand at 631.204 kb on - strand at 631.244 kb on + strand at 631.353 kb on + strand at 631.353 kb on + strand at 631.354 kb on - strand at 631.354 kb on - strand at 631.354 kb on - strand at 631.416 kb on - strand at 631.527 kb on - strand at 631.527 kb on - strand at 631.527 kb on - strand at 631.527 kb on - strand at 631.527 kb on - strand at 631.527 kb on - strand at 631.534 kb on - strand at 631.534 kb on - strand at 631.577 kb on + strand at 631.577 kb on + strand at 631.577 kb on + strand at 631.577 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 629,508 + Psest_0575 0.83 -0.4 629,583 - +1.1 629,583 - +1.0 629,604 - -0.1 629,604 - -0.3 629,710 + Psest_0576 0.16 -2.0 629,710 + Psest_0576 0.16 +0.0 629,731 + Psest_0576 0.20 -1.8 629,757 + Psest_0576 0.24 -2.3 629,757 + Psest_0576 0.24 -1.0 629,757 + Psest_0576 0.24 -0.3 629,757 + Psest_0576 0.24 +1.7 629,757 + Psest_0576 0.24 -0.7 629,757 + Psest_0576 0.24 -1.8 629,757 + Psest_0576 0.24 -1.4 629,757 + Psest_0576 0.24 +0.5 629,757 + Psest_0576 0.24 -0.2 629,758 - Psest_0576 0.24 +0.2 629,758 - Psest_0576 0.24 -1.1 629,758 - Psest_0576 0.24 -1.0 629,758 - Psest_0576 0.24 +0.7 629,758 - Psest_0576 0.24 -0.0 629,758 - Psest_0576 0.24 +0.4 629,758 - Psest_0576 0.24 -0.5 629,758 - Psest_0576 0.24 +0.2 629,760 + Psest_0576 0.25 +1.4 629,760 + Psest_0576 0.25 -0.5 629,760 + Psest_0576 0.25 -0.1 629,760 + Psest_0576 0.25 -0.8 629,760 + Psest_0576 0.25 -1.2 629,760 + Psest_0576 0.25 -1.4 629,760 + Psest_0576 0.25 -1.3 629,761 - Psest_0576 0.25 +0.3 629,770 + Psest_0576 0.26 -2.1 629,771 - Psest_0576 0.27 -0.1 629,783 + Psest_0576 0.28 -0.9 629,783 + Psest_0576 0.28 -0.2 629,819 + Psest_0576 0.34 -0.3 629,819 + Psest_0576 0.34 -1.8 629,820 - Psest_0576 0.35 -0.6 629,820 - Psest_0576 0.35 -0.2 629,866 + Psest_0576 0.42 -0.8 629,867 - Psest_0576 0.42 -0.3 629,880 + Psest_0576 0.45 +0.5 629,880 + Psest_0576 0.45 -1.1 629,881 - Psest_0576 0.45 -0.0 629,945 + Psest_0576 0.56 -0.0 629,945 + Psest_0576 0.56 -1.0 629,946 - Psest_0576 0.56 +2.0 629,946 - Psest_0576 0.56 -0.5 630,024 + Psest_0576 0.69 +0.5 630,024 + Psest_0576 0.69 +2.0 630,024 + Psest_0576 0.69 -1.0 630,024 + Psest_0576 0.69 -1.0 630,025 - Psest_0576 0.69 +0.4 630,025 - Psest_0576 0.69 -0.9 630,025 - Psest_0576 0.69 -0.9 630,025 - Psest_0576 0.69 -0.0 630,048 + Psest_0576 0.73 -1.4 630,048 + Psest_0576 0.73 -1.9 630,048 + Psest_0576 0.73 -1.6 630,048 + Psest_0576 0.73 +1.3 630,048 + Psest_0576 0.73 -0.8 630,048 + Psest_0576 0.73 +0.2 630,048 + Psest_0576 0.73 -0.7 630,049 - Psest_0576 0.73 +0.2 630,049 - Psest_0576 0.73 -0.1 630,049 - Psest_0576 0.73 +0.4 630,049 - Psest_0576 0.73 -0.6 630,049 - Psest_0576 0.73 +0.5 630,049 - Psest_0576 0.73 -0.3 630,049 - Psest_0576 0.73 -0.3 630,049 - Psest_0576 0.73 -0.3 630,049 - Psest_0576 0.73 +0.7 630,107 - Psest_0576 0.82 -0.3 630,110 - Psest_0576 0.83 -0.8 630,188 + -2.0 630,188 + -1.9 630,189 - +0.1 630,189 - -1.0 630,194 - -0.9 630,211 + -1.1 630,211 + -0.6 630,211 + -0.6 630,211 + -2.2 630,211 + -0.5 630,211 + -1.3 630,211 + -2.0 630,211 + -0.1 630,211 + -0.8 630,211 + +0.8 630,211 + -3.4 630,211 + -1.3 630,211 + -2.7 630,211 + -2.1 630,211 + -1.5 630,211 + +1.1 630,211 + -1.0 630,212 - -0.4 630,212 - -1.5 630,212 - +0.1 630,212 - +0.1 630,212 - -2.7 630,212 - +0.3 630,212 - -2.6 630,212 - -0.2 630,212 - +0.8 630,212 - -0.9 630,212 - +0.1 630,212 - +0.5 630,212 - -0.0 630,212 - -0.3 630,212 - -1.8 630,212 - -2.8 630,212 - -2.6 630,212 - +0.3 630,212 - -0.8 630,212 - -1.3 630,212 - -1.5 630,239 + +0.3 630,262 + -1.8 630,262 + +0.8 630,262 + +0.7 630,262 + -1.4 630,262 + +0.7 630,263 - +0.7 630,264 + -0.7 630,264 + +0.2 630,375 + -0.1 630,466 + Psest_0577 0.30 -0.7 630,466 + Psest_0577 0.30 -0.9 630,466 + Psest_0577 0.30 -0.3 630,466 + Psest_0577 0.30 -3.0 630,466 + Psest_0577 0.30 -1.5 630,466 + Psest_0577 0.30 -1.0 630,466 + Psest_0577 0.30 -1.0 630,466 + Psest_0577 0.30 +0.9 630,466 + Psest_0577 0.30 -0.0 630,467 - Psest_0577 0.31 -1.6 630,467 - Psest_0577 0.31 +0.9 630,467 - Psest_0577 0.31 +0.5 630,467 - Psest_0577 0.31 -0.5 630,467 - Psest_0577 0.31 +0.5 630,467 - Psest_0577 0.31 -1.0 630,467 - Psest_0577 0.31 -0.5 630,467 - Psest_0577 0.31 +1.0 630,467 - Psest_0577 0.31 +0.8 630,467 - Psest_0577 0.31 -1.4 630,575 + Psest_0577 0.68 -0.3 630,575 + Psest_0577 0.68 -0.7 630,575 + Psest_0577 0.68 -0.6 630,575 + Psest_0577 0.68 +0.2 630,575 + Psest_0577 0.68 -0.5 630,576 - Psest_0577 0.68 +1.0 630,576 - Psest_0577 0.68 -3.0 630,576 - Psest_0577 0.68 -2.1 630,617 + Psest_0577 0.82 -1.6 630,618 - Psest_0577 0.82 -0.5 630,748 - -2.3 630,848 + Psest_0578 0.17 -0.6 630,848 + Psest_0578 0.17 -1.2 630,848 + Psest_0578 0.17 -1.4 630,848 + Psest_0578 0.17 -0.8 630,848 + Psest_0578 0.17 -2.4 630,848 + Psest_0578 0.17 -2.1 630,848 + Psest_0578 0.17 -0.3 630,848 + Psest_0578 0.17 +1.5 630,848 + Psest_0578 0.17 +0.2 630,848 + Psest_0578 0.17 -2.1 630,848 + Psest_0578 0.17 -0.0 630,848 + Psest_0578 0.17 -0.0 630,848 + Psest_0578 0.17 -1.3 630,848 + Psest_0578 0.17 -1.0 630,848 + Psest_0578 0.17 -0.8 630,848 + Psest_0578 0.17 -0.5 630,848 + Psest_0578 0.17 +1.3 630,849 - Psest_0578 0.17 -0.9 630,849 - Psest_0578 0.17 +0.3 630,849 - Psest_0578 0.17 -0.3 630,849 - Psest_0578 0.17 -1.8 630,849 - Psest_0578 0.17 -1.6 630,849 - Psest_0578 0.17 +0.7 630,858 + Psest_0578 0.19 +0.2 630,858 + Psest_0578 0.19 -0.8 630,858 + Psest_0578 0.19 -2.3 630,858 + Psest_0578 0.19 -3.0 630,859 - Psest_0578 0.19 -1.0 630,859 - Psest_0578 0.19 -0.3 630,859 - Psest_0578 0.19 -1.8 630,859 - Psest_0578 0.19 -3.4 630,882 - Psest_0578 0.24 -0.6 630,882 - Psest_0578 0.24 -1.4 630,882 - Psest_0578 0.24 -0.0 630,930 + Psest_0578 0.35 -1.3 630,966 + Psest_0578 0.43 +2.2 630,967 - Psest_0578 0.43 -2.3 631,024 + Psest_0578 0.56 -1.9 631,024 + Psest_0578 0.56 -0.7 631,024 + Psest_0578 0.56 -1.6 631,025 - Psest_0578 0.56 -0.9 631,137 - Psest_0578 0.81 -3.7 631,137 - Psest_0578 0.81 +0.1 631,174 + Psest_0578 0.90 -1.7 631,174 + Psest_0578 0.90 -0.6 631,174 + Psest_0578 0.90 -0.1 631,174 + Psest_0578 0.90 -3.2 631,175 - -0.9 631,175 - -1.0 631,175 - -0.6 631,178 - -2.9 631,203 + -1.3 631,203 + -1.8 631,203 + -0.7 631,203 + +0.9 631,203 + +0.1 631,203 + -2.3 631,203 + -2.0 631,203 + -1.4 631,203 + -0.1 631,203 + -1.3 631,203 + -0.3 631,203 + +0.1 631,203 + -0.7 631,203 + -1.6 631,204 - -0.8 631,204 - -2.3 631,204 - +0.2 631,204 - -1.6 631,204 - -0.5 631,204 - +0.9 631,204 - -0.3 631,204 - -2.2 631,204 - -1.2 631,204 - -3.1 631,204 - -0.7 631,204 - -1.2 631,204 - -0.5 631,244 + +0.9 631,353 + +0.5 631,353 + -1.5 631,354 - +0.7 631,354 - -0.9 631,354 - -1.3 631,416 - -1.6 631,527 - -2.4 631,527 - -0.3 631,527 - -1.1 631,527 - -0.8 631,527 - -0.5 631,527 - -1.1 631,534 - -1.8 631,534 - -2.7 631,577 + -1.8 631,577 + -1.6 631,577 + -0.4 631,577 + -2.3
Or see this region's nucleotide sequence