Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0566

Experiment: Def Carbenicillin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0565 and Psest_0566 overlap by 4 nucleotidesPsest_0566 and Psest_0567 are separated by 158 nucleotides Psest_0565: Psest_0565 - urea ABC transporter, permease protein UrtC, at 620,619 to 621,695 _0565 Psest_0566: Psest_0566 - urea ABC transporter, permease component (from data), at 621,692 to 623,263 _0566 Psest_0567: Psest_0567 - urea ABC transporter, urea binding protein, at 623,422 to 624,690 _0567 Position (kb) 621 622 623 624Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 620.878 kb on + strand, within Psest_0565at 620.878 kb on + strand, within Psest_0565at 620.878 kb on + strand, within Psest_0565at 620.878 kb on + strand, within Psest_0565at 620.878 kb on + strand, within Psest_0565at 620.878 kb on + strand, within Psest_0565at 621.037 kb on + strand, within Psest_0565at 621.038 kb on - strand, within Psest_0565at 621.038 kb on - strand, within Psest_0565at 621.223 kb on + strand, within Psest_0565at 621.223 kb on + strand, within Psest_0565at 621.223 kb on + strand, within Psest_0565at 621.223 kb on + strand, within Psest_0565at 621.224 kb on - strand, within Psest_0565at 621.224 kb on - strand, within Psest_0565at 621.224 kb on - strand, within Psest_0565at 621.224 kb on - strand, within Psest_0565at 621.224 kb on - strand, within Psest_0565at 621.224 kb on - strand, within Psest_0565at 621.412 kb on + strand, within Psest_0565at 621.412 kb on + strand, within Psest_0565at 621.412 kb on + strand, within Psest_0565at 621.412 kb on + strand, within Psest_0565at 621.412 kb on + strand, within Psest_0565at 621.412 kb on + strand, within Psest_0565at 621.412 kb on + strand, within Psest_0565at 621.412 kb on + strand, within Psest_0565at 621.412 kb on + strand, within Psest_0565at 621.412 kb on + strand, within Psest_0565at 621.412 kb on + strand, within Psest_0565at 621.412 kb on + strand, within Psest_0565at 621.413 kb on - strand, within Psest_0565at 621.413 kb on - strand, within Psest_0565at 621.413 kb on - strand, within Psest_0565at 621.413 kb on - strand, within Psest_0565at 621.413 kb on - strand, within Psest_0565at 621.413 kb on - strand, within Psest_0565at 621.551 kb on - strand, within Psest_0565at 621.680 kb on + strandat 621.680 kb on + strandat 621.681 kb on - strandat 621.681 kb on - strandat 621.906 kb on + strand, within Psest_0566at 621.906 kb on + strand, within Psest_0566at 621.906 kb on + strand, within Psest_0566at 621.906 kb on + strand, within Psest_0566at 621.906 kb on + strand, within Psest_0566at 621.906 kb on + strand, within Psest_0566at 621.906 kb on + strand, within Psest_0566at 621.906 kb on + strand, within Psest_0566at 621.906 kb on + strand, within Psest_0566at 621.906 kb on + strand, within Psest_0566at 621.906 kb on + strand, within Psest_0566at 621.906 kb on + strand, within Psest_0566at 621.906 kb on + strand, within Psest_0566at 621.906 kb on + strand, within Psest_0566at 621.906 kb on + strand, within Psest_0566at 621.906 kb on + strand, within Psest_0566at 621.907 kb on - strand, within Psest_0566at 621.907 kb on - strand, within Psest_0566at 621.907 kb on - strand, within Psest_0566at 621.907 kb on - strand, within Psest_0566at 621.907 kb on - strand, within Psest_0566at 621.907 kb on - strand, within Psest_0566at 621.907 kb on - strand, within Psest_0566at 621.907 kb on - strand, within Psest_0566at 621.907 kb on - strand, within Psest_0566at 622.443 kb on + strand, within Psest_0566at 622.443 kb on + strand, within Psest_0566at 622.443 kb on + strand, within Psest_0566at 622.443 kb on + strand, within Psest_0566at 622.443 kb on + strand, within Psest_0566at 622.443 kb on + strand, within Psest_0566at 622.443 kb on + strand, within Psest_0566at 622.443 kb on + strand, within Psest_0566at 622.443 kb on + strand, within Psest_0566at 622.443 kb on + strand, within Psest_0566at 622.443 kb on + strand, within Psest_0566at 622.443 kb on + strand, within Psest_0566at 622.444 kb on - strand, within Psest_0566at 622.444 kb on - strand, within Psest_0566at 622.452 kb on + strand, within Psest_0566at 622.453 kb on - strand, within Psest_0566at 622.453 kb on - strand, within Psest_0566at 623.028 kb on + strand, within Psest_0566at 623.028 kb on + strand, within Psest_0566at 623.240 kb on + strandat 623.240 kb on + strandat 623.240 kb on + strandat 623.241 kb on - strandat 623.241 kb on - strandat 623.423 kb on + strandat 623.423 kb on + strandat 623.423 kb on + strandat 623.423 kb on + strandat 623.423 kb on + strandat 623.423 kb on + strandat 623.423 kb on + strandat 623.423 kb on + strandat 623.424 kb on - strandat 623.424 kb on - strandat 623.424 kb on - strandat 623.470 kb on - strandat 623.471 kb on + strandat 623.471 kb on + strandat 623.471 kb on + strandat 623.472 kb on - strandat 623.472 kb on - strandat 623.472 kb on - strandat 623.472 kb on - strandat 623.604 kb on - strand, within Psest_0567at 623.647 kb on + strand, within Psest_0567at 623.647 kb on + strand, within Psest_0567at 623.648 kb on - strand, within Psest_0567at 623.711 kb on + strand, within Psest_0567at 623.711 kb on + strand, within Psest_0567at 623.711 kb on + strand, within Psest_0567at 623.711 kb on + strand, within Psest_0567at 623.711 kb on + strand, within Psest_0567at 623.711 kb on + strand, within Psest_0567at 623.711 kb on + strand, within Psest_0567at 623.711 kb on + strand, within Psest_0567at 623.712 kb on - strand, within Psest_0567at 623.712 kb on - strand, within Psest_0567at 623.712 kb on - strand, within Psest_0567at 623.712 kb on - strand, within Psest_0567at 623.712 kb on - strand, within Psest_0567at 623.712 kb on - strand, within Psest_0567at 623.712 kb on - strand, within Psest_0567at 623.712 kb on - strand, within Psest_0567at 623.712 kb on - strand, within Psest_0567at 623.712 kb on - strand, within Psest_0567at 623.834 kb on + strand, within Psest_0567at 623.834 kb on + strand, within Psest_0567at 623.834 kb on + strand, within Psest_0567at 623.835 kb on - strand, within Psest_0567at 623.835 kb on - strand, within Psest_0567at 623.835 kb on - strand, within Psest_0567at 623.835 kb on - strand, within Psest_0567at 623.960 kb on + strand, within Psest_0567at 623.961 kb on - strand, within Psest_0567at 624.077 kb on + strand, within Psest_0567at 624.077 kb on + strand, within Psest_0567at 624.077 kb on + strand, within Psest_0567at 624.078 kb on - strand, within Psest_0567at 624.078 kb on - strand, within Psest_0567at 624.156 kb on - strand, within Psest_0567at 624.161 kb on + strand, within Psest_0567at 624.161 kb on + strand, within Psest_0567at 624.161 kb on + strand, within Psest_0567at 624.162 kb on - strand, within Psest_0567at 624.162 kb on - strand, within Psest_0567at 624.162 kb on - strand, within Psest_0567at 624.162 kb on - strand, within Psest_0567at 624.162 kb on - strand, within Psest_0567at 624.263 kb on + strand, within Psest_0567at 624.263 kb on + strand, within Psest_0567at 624.263 kb on + strand, within Psest_0567at 624.263 kb on + strand, within Psest_0567

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml
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620,878 + Psest_0565 0.24 -0.7
620,878 + Psest_0565 0.24 -1.9
620,878 + Psest_0565 0.24 +0.0
620,878 + Psest_0565 0.24 -1.3
620,878 + Psest_0565 0.24 -0.6
620,878 + Psest_0565 0.24 -1.7
621,037 + Psest_0565 0.39 -0.4
621,038 - Psest_0565 0.39 -0.4
621,038 - Psest_0565 0.39 +0.5
621,223 + Psest_0565 0.56 +0.7
621,223 + Psest_0565 0.56 +0.1
621,223 + Psest_0565 0.56 -1.0
621,223 + Psest_0565 0.56 -0.6
621,224 - Psest_0565 0.56 +0.4
621,224 - Psest_0565 0.56 -0.1
621,224 - Psest_0565 0.56 +1.2
621,224 - Psest_0565 0.56 -0.8
621,224 - Psest_0565 0.56 +1.4
621,224 - Psest_0565 0.56 -0.5
621,412 + Psest_0565 0.74 +0.8
621,412 + Psest_0565 0.74 +1.8
621,412 + Psest_0565 0.74 +1.6
621,412 + Psest_0565 0.74 +1.1
621,412 + Psest_0565 0.74 -0.1
621,412 + Psest_0565 0.74 +2.2
621,412 + Psest_0565 0.74 +1.3
621,412 + Psest_0565 0.74 +2.4
621,412 + Psest_0565 0.74 +1.3
621,412 + Psest_0565 0.74 -0.1
621,412 + Psest_0565 0.74 +1.8
621,412 + Psest_0565 0.74 +2.6
621,413 - Psest_0565 0.74 -0.0
621,413 - Psest_0565 0.74 -2.3
621,413 - Psest_0565 0.74 -0.1
621,413 - Psest_0565 0.74 -0.4
621,413 - Psest_0565 0.74 -0.9
621,413 - Psest_0565 0.74 -0.1
621,551 - Psest_0565 0.87 +1.0
621,680 + +0.7
621,680 + +0.7
621,681 - -0.1
621,681 - +0.4
621,906 + Psest_0566 0.14 +1.8
621,906 + Psest_0566 0.14 +0.7
621,906 + Psest_0566 0.14 +1.3
621,906 + Psest_0566 0.14 +1.7
621,906 + Psest_0566 0.14 +1.6
621,906 + Psest_0566 0.14 +0.6
621,906 + Psest_0566 0.14 +0.1
621,906 + Psest_0566 0.14 +0.5
621,906 + Psest_0566 0.14 +2.2
621,906 + Psest_0566 0.14 +0.4
621,906 + Psest_0566 0.14 +0.6
621,906 + Psest_0566 0.14 +1.3
621,906 + Psest_0566 0.14 +0.3
621,906 + Psest_0566 0.14 +0.3
621,906 + Psest_0566 0.14 +1.1
621,906 + Psest_0566 0.14 +1.4
621,907 - Psest_0566 0.14 +1.6
621,907 - Psest_0566 0.14 -0.0
621,907 - Psest_0566 0.14 +0.4
621,907 - Psest_0566 0.14 +1.4
621,907 - Psest_0566 0.14 -0.9
621,907 - Psest_0566 0.14 -0.3
621,907 - Psest_0566 0.14 +1.8
621,907 - Psest_0566 0.14 -1.0
621,907 - Psest_0566 0.14 -1.7
622,443 + Psest_0566 0.48 +1.4
622,443 + Psest_0566 0.48 +1.5
622,443 + Psest_0566 0.48 +2.6
622,443 + Psest_0566 0.48 +0.5
622,443 + Psest_0566 0.48 +2.2
622,443 + Psest_0566 0.48 +1.5
622,443 + Psest_0566 0.48 +0.5
622,443 + Psest_0566 0.48 +0.8
622,443 + Psest_0566 0.48 +2.0
622,443 + Psest_0566 0.48 +1.1
622,443 + Psest_0566 0.48 +1.1
622,443 + Psest_0566 0.48 +1.0
622,444 - Psest_0566 0.48 +1.9
622,444 - Psest_0566 0.48 +1.6
622,452 + Psest_0566 0.48 +3.0
622,453 - Psest_0566 0.48 +0.2
622,453 - Psest_0566 0.48 +2.2
623,028 + Psest_0566 0.85 +2.1
623,028 + Psest_0566 0.85 +0.7
623,240 + +1.5
623,240 + -0.8
623,240 + +1.9
623,241 - +1.4
623,241 - +1.8
623,423 + -0.9
623,423 + +1.4
623,423 + +0.5
623,423 + +0.0
623,423 + +0.4
623,423 + -1.6
623,423 + +0.1
623,423 + -1.0
623,424 - +2.4
623,424 - +1.7
623,424 - +1.9
623,470 - +0.6
623,471 + +2.1
623,471 + -0.6
623,471 + +2.3
623,472 - +1.9
623,472 - +2.5
623,472 - +1.2
623,472 - +2.0
623,604 - Psest_0567 0.14 +2.5
623,647 + Psest_0567 0.18 +3.2
623,647 + Psest_0567 0.18 -1.1
623,648 - Psest_0567 0.18 +1.5
623,711 + Psest_0567 0.23 +1.1
623,711 + Psest_0567 0.23 -1.2
623,711 + Psest_0567 0.23 +0.5
623,711 + Psest_0567 0.23 +0.5
623,711 + Psest_0567 0.23 +0.0
623,711 + Psest_0567 0.23 +4.0
623,711 + Psest_0567 0.23 +1.1
623,711 + Psest_0567 0.23 +1.5
623,712 - Psest_0567 0.23 -0.3
623,712 - Psest_0567 0.23 +2.6
623,712 - Psest_0567 0.23 +1.9
623,712 - Psest_0567 0.23 +1.8
623,712 - Psest_0567 0.23 +1.6
623,712 - Psest_0567 0.23 +2.1
623,712 - Psest_0567 0.23 -0.2
623,712 - Psest_0567 0.23 +2.1
623,712 - Psest_0567 0.23 +0.8
623,712 - Psest_0567 0.23 +2.0
623,834 + Psest_0567 0.32 +0.8
623,834 + Psest_0567 0.32 +0.5
623,834 + Psest_0567 0.32 +0.8
623,835 - Psest_0567 0.33 +2.2
623,835 - Psest_0567 0.33 +1.4
623,835 - Psest_0567 0.33 +0.9
623,835 - Psest_0567 0.33 +0.5
623,960 + Psest_0567 0.42 +2.3
623,961 - Psest_0567 0.42 +1.2
624,077 + Psest_0567 0.52 +1.9
624,077 + Psest_0567 0.52 +0.1
624,077 + Psest_0567 0.52 +1.1
624,078 - Psest_0567 0.52 -1.1
624,078 - Psest_0567 0.52 -0.4
624,156 - Psest_0567 0.58 -1.6
624,161 + Psest_0567 0.58 +1.2
624,161 + Psest_0567 0.58 +0.6
624,161 + Psest_0567 0.58 +1.4
624,162 - Psest_0567 0.58 +0.7
624,162 - Psest_0567 0.58 +0.0
624,162 - Psest_0567 0.58 -1.2
624,162 - Psest_0567 0.58 -0.4
624,162 - Psest_0567 0.58 -0.2
624,263 + Psest_0567 0.66 +0.0
624,263 + Psest_0567 0.66 -0.7
624,263 + Psest_0567 0.66 +0.4
624,263 + Psest_0567 0.66 +1.2

Or see this region's nucleotide sequence