Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0562 and Psest_0563 are separated by 105 nucleotides Psest_0563 and Psest_0564 are separated by 166 nucleotides Psest_0564 and Psest_0565 overlap by 1 nucleotides
Psest_0562: Psest_0562 - magnesium-translocating P-type ATPase, at 615,249 to 618,797
_0562
Psest_0563: Psest_0563 - urea ABC transporter, ATP-binding protein UrtE, at 618,903 to 619,601
_0563
Psest_0564: Psest_0564 - urea ABC transporter, ATP-binding protein UrtD, at 619,768 to 620,619
_0564
Psest_0565: Psest_0565 - urea ABC transporter, permease protein UrtC, at 620,619 to 621,695
_0565
Position (kb) 619
620
621 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 618.786 kb on + strand at 618.786 kb on + strand at 618.786 kb on + strand at 618.786 kb on + strand at 618.787 kb on - strand at 618.904 kb on + strand at 618.904 kb on + strand at 618.905 kb on - strand at 618.905 kb on - strand at 618.905 kb on - strand at 618.905 kb on - strand at 618.905 kb on - strand at 618.924 kb on + strand at 618.924 kb on + strand at 618.924 kb on + strand at 618.924 kb on + strand at 618.924 kb on + strand at 618.924 kb on + strand at 618.924 kb on + strand at 618.924 kb on + strand at 618.925 kb on - strand at 618.991 kb on + strand, within Psest_0563 at 619.021 kb on + strand, within Psest_0563 at 619.021 kb on + strand, within Psest_0563 at 619.022 kb on - strand, within Psest_0563 at 619.252 kb on + strand, within Psest_0563 at 619.252 kb on + strand, within Psest_0563 at 619.252 kb on + strand, within Psest_0563 at 619.252 kb on + strand, within Psest_0563 at 619.253 kb on - strand, within Psest_0563 at 619.364 kb on - strand, within Psest_0563 at 619.364 kb on - strand, within Psest_0563 at 619.573 kb on + strand at 619.573 kb on + strand at 619.574 kb on - strand at 619.639 kb on + strand at 619.639 kb on + strand at 619.643 kb on + strand at 619.643 kb on + strand at 619.643 kb on + strand at 619.643 kb on + strand at 619.644 kb on - strand at 619.654 kb on + strand at 619.655 kb on - strand at 619.693 kb on + strand at 619.693 kb on + strand at 619.781 kb on + strand at 619.781 kb on + strand at 619.781 kb on + strand at 619.781 kb on + strand at 619.781 kb on + strand at 619.782 kb on - strand at 619.782 kb on - strand at 619.782 kb on - strand at 619.782 kb on - strand at 619.782 kb on - strand at 619.782 kb on - strand at 620.429 kb on + strand, within Psest_0564 at 620.430 kb on - strand, within Psest_0564 at 620.609 kb on - strand at 620.666 kb on - strand at 620.878 kb on + strand, within Psest_0565 at 620.878 kb on + strand, within Psest_0565 at 620.878 kb on + strand, within Psest_0565 at 620.878 kb on + strand, within Psest_0565 at 620.878 kb on + strand, within Psest_0565 at 620.878 kb on + strand, within Psest_0565 at 621.037 kb on + strand, within Psest_0565 at 621.038 kb on - strand, within Psest_0565 at 621.038 kb on - strand, within Psest_0565 at 621.223 kb on + strand, within Psest_0565 at 621.223 kb on + strand, within Psest_0565 at 621.223 kb on + strand, within Psest_0565 at 621.223 kb on + strand, within Psest_0565 at 621.224 kb on - strand, within Psest_0565 at 621.224 kb on - strand, within Psest_0565 at 621.224 kb on - strand, within Psest_0565 at 621.224 kb on - strand, within Psest_0565 at 621.224 kb on - strand, within Psest_0565 at 621.224 kb on - strand, within Psest_0565 at 621.412 kb on + strand, within Psest_0565 at 621.412 kb on + strand, within Psest_0565 at 621.412 kb on + strand, within Psest_0565 at 621.412 kb on + strand, within Psest_0565 at 621.412 kb on + strand, within Psest_0565 at 621.412 kb on + strand, within Psest_0565 at 621.412 kb on + strand, within Psest_0565 at 621.412 kb on + strand, within Psest_0565 at 621.412 kb on + strand, within Psest_0565 at 621.412 kb on + strand, within Psest_0565 at 621.412 kb on + strand, within Psest_0565 at 621.412 kb on + strand, within Psest_0565 at 621.413 kb on - strand, within Psest_0565 at 621.413 kb on - strand, within Psest_0565 at 621.413 kb on - strand, within Psest_0565 at 621.413 kb on - strand, within Psest_0565 at 621.413 kb on - strand, within Psest_0565 at 621.413 kb on - strand, within Psest_0565 at 621.551 kb on - strand, within Psest_0565
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 618,786 + +1.0 618,786 + +0.8 618,786 + +0.2 618,786 + -1.1 618,787 - +1.1 618,904 + +1.1 618,904 + +1.9 618,905 - +0.3 618,905 - +0.9 618,905 - +1.2 618,905 - +1.4 618,905 - +2.3 618,924 + +0.8 618,924 + +1.4 618,924 + +0.4 618,924 + +0.0 618,924 + +0.5 618,924 + +1.0 618,924 + -0.7 618,924 + -0.1 618,925 - +1.7 618,991 + Psest_0563 0.13 +1.2 619,021 + Psest_0563 0.17 +1.5 619,021 + Psest_0563 0.17 +1.0 619,022 - Psest_0563 0.17 +1.9 619,252 + Psest_0563 0.50 -1.1 619,252 + Psest_0563 0.50 +0.5 619,252 + Psest_0563 0.50 +1.0 619,252 + Psest_0563 0.50 +0.0 619,253 - Psest_0563 0.50 +0.7 619,364 - Psest_0563 0.66 +0.2 619,364 - Psest_0563 0.66 +0.7 619,573 + +0.7 619,573 + +0.9 619,574 - +1.5 619,639 + -3.0 619,639 + -0.8 619,643 + -0.5 619,643 + +0.3 619,643 + +0.7 619,643 + +0.4 619,644 - +2.7 619,654 + -0.3 619,655 - +0.6 619,693 + -1.9 619,693 + -1.3 619,781 + -0.7 619,781 + -0.1 619,781 + -2.0 619,781 + +0.1 619,781 + -1.0 619,782 - -0.9 619,782 - -0.3 619,782 - +0.0 619,782 - +0.7 619,782 - +0.4 619,782 - +0.9 620,429 + Psest_0564 0.78 +0.7 620,430 - Psest_0564 0.78 -0.6 620,609 - -0.1 620,666 - -0.4 620,878 + Psest_0565 0.24 -0.7 620,878 + Psest_0565 0.24 -1.9 620,878 + Psest_0565 0.24 +0.0 620,878 + Psest_0565 0.24 -1.3 620,878 + Psest_0565 0.24 -0.6 620,878 + Psest_0565 0.24 -1.7 621,037 + Psest_0565 0.39 -0.4 621,038 - Psest_0565 0.39 -0.4 621,038 - Psest_0565 0.39 +0.5 621,223 + Psest_0565 0.56 +0.7 621,223 + Psest_0565 0.56 +0.1 621,223 + Psest_0565 0.56 -1.0 621,223 + Psest_0565 0.56 -0.6 621,224 - Psest_0565 0.56 +0.4 621,224 - Psest_0565 0.56 -0.1 621,224 - Psest_0565 0.56 +1.2 621,224 - Psest_0565 0.56 -0.8 621,224 - Psest_0565 0.56 +1.4 621,224 - Psest_0565 0.56 -0.5 621,412 + Psest_0565 0.74 +0.8 621,412 + Psest_0565 0.74 +1.8 621,412 + Psest_0565 0.74 +1.6 621,412 + Psest_0565 0.74 +1.1 621,412 + Psest_0565 0.74 -0.1 621,412 + Psest_0565 0.74 +2.2 621,412 + Psest_0565 0.74 +1.3 621,412 + Psest_0565 0.74 +2.4 621,412 + Psest_0565 0.74 +1.3 621,412 + Psest_0565 0.74 -0.1 621,412 + Psest_0565 0.74 +1.8 621,412 + Psest_0565 0.74 +2.6 621,413 - Psest_0565 0.74 -0.0 621,413 - Psest_0565 0.74 -2.3 621,413 - Psest_0565 0.74 -0.1 621,413 - Psest_0565 0.74 -0.4 621,413 - Psest_0565 0.74 -0.9 621,413 - Psest_0565 0.74 -0.1 621,551 - Psest_0565 0.87 +1.0
Or see this region's nucleotide sequence