Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0561 and Psest_0562 are separated by 204 nucleotides Psest_0562 and Psest_0563 are separated by 105 nucleotides Psest_0563 and Psest_0564 are separated by 166 nucleotides
Psest_0561: Psest_0561 - Urease accessory protein UreH, at 614,211 to 615,044
_0561
Psest_0562: Psest_0562 - magnesium-translocating P-type ATPase, at 615,249 to 618,797
_0562
Psest_0563: Psest_0563 - urea ABC transporter, ATP-binding protein UrtE, at 618,903 to 619,601
_0563
Psest_0564: Psest_0564 - urea ABC transporter, ATP-binding protein UrtD, at 619,768 to 620,619
_0564
Position (kb) 615
616
617
618
619 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 614.277 kb on + strand at 614.278 kb on - strand at 614.278 kb on - strand at 614.278 kb on - strand at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.617 kb on + strand, within Psest_0561 at 614.617 kb on + strand, within Psest_0561 at 614.618 kb on - strand, within Psest_0561 at 614.618 kb on - strand, within Psest_0561 at 614.680 kb on + strand, within Psest_0561 at 614.681 kb on - strand, within Psest_0561 at 614.681 kb on - strand, within Psest_0561 at 614.750 kb on - strand, within Psest_0561 at 614.834 kb on + strand, within Psest_0561 at 614.912 kb on - strand, within Psest_0561 at 615.061 kb on + strand at 615.083 kb on + strand at 615.144 kb on - strand at 615.144 kb on - strand at 615.144 kb on - strand at 615.190 kb on + strand at 615.214 kb on + strand at 615.214 kb on + strand at 615.316 kb on + strand at 615.316 kb on + strand at 615.316 kb on + strand at 615.317 kb on - strand at 615.317 kb on - strand at 615.397 kb on + strand at 615.398 kb on - strand at 615.470 kb on - strand at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.869 kb on + strand, within Psest_0562 at 616.503 kb on + strand, within Psest_0562 at 616.503 kb on + strand, within Psest_0562 at 616.504 kb on - strand, within Psest_0562 at 616.551 kb on - strand, within Psest_0562 at 616.551 kb on - strand, within Psest_0562 at 616.660 kb on + strand, within Psest_0562 at 617.056 kb on - strand, within Psest_0562 at 617.056 kb on - strand, within Psest_0562 at 617.385 kb on + strand, within Psest_0562 at 617.569 kb on - strand, within Psest_0562 at 618.364 kb on + strand, within Psest_0562 at 618.365 kb on - strand, within Psest_0562 at 618.365 kb on - strand, within Psest_0562 at 618.376 kb on + strand, within Psest_0562 at 618.377 kb on - strand, within Psest_0562 at 618.567 kb on + strand at 618.575 kb on - strand at 618.595 kb on + strand at 618.595 kb on + strand at 618.595 kb on + strand at 618.595 kb on + strand at 618.595 kb on + strand at 618.595 kb on + strand at 618.595 kb on + strand at 618.595 kb on + strand at 618.595 kb on + strand at 618.595 kb on + strand at 618.595 kb on + strand at 618.596 kb on - strand at 618.596 kb on - strand at 618.596 kb on - strand at 618.596 kb on - strand at 618.596 kb on - strand at 618.596 kb on - strand at 618.596 kb on - strand at 618.596 kb on - strand at 618.596 kb on - strand at 618.596 kb on - strand at 618.596 kb on - strand at 618.786 kb on + strand at 618.786 kb on + strand at 618.786 kb on + strand at 618.786 kb on + strand at 618.787 kb on - strand at 618.904 kb on + strand at 618.904 kb on + strand at 618.905 kb on - strand at 618.905 kb on - strand at 618.905 kb on - strand at 618.905 kb on - strand at 618.905 kb on - strand at 618.924 kb on + strand at 618.924 kb on + strand at 618.924 kb on + strand at 618.924 kb on + strand at 618.924 kb on + strand at 618.924 kb on + strand at 618.924 kb on + strand at 618.924 kb on + strand at 618.925 kb on - strand at 618.991 kb on + strand, within Psest_0563 at 619.021 kb on + strand, within Psest_0563 at 619.021 kb on + strand, within Psest_0563 at 619.022 kb on - strand, within Psest_0563 at 619.252 kb on + strand, within Psest_0563 at 619.252 kb on + strand, within Psest_0563 at 619.252 kb on + strand, within Psest_0563 at 619.252 kb on + strand, within Psest_0563 at 619.253 kb on - strand, within Psest_0563 at 619.364 kb on - strand, within Psest_0563 at 619.364 kb on - strand, within Psest_0563 at 619.573 kb on + strand at 619.573 kb on + strand at 619.574 kb on - strand at 619.639 kb on + strand at 619.639 kb on + strand at 619.643 kb on + strand at 619.643 kb on + strand at 619.643 kb on + strand at 619.643 kb on + strand at 619.644 kb on - strand at 619.654 kb on + strand at 619.655 kb on - strand at 619.693 kb on + strand at 619.693 kb on + strand at 619.781 kb on + strand at 619.781 kb on + strand at 619.781 kb on + strand at 619.781 kb on + strand at 619.781 kb on + strand at 619.782 kb on - strand at 619.782 kb on - strand at 619.782 kb on - strand at 619.782 kb on - strand at 619.782 kb on - strand at 619.782 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 614,277 + +0.7 614,278 - +0.6 614,278 - +0.6 614,278 - +1.0 614,410 + Psest_0561 0.24 +3.0 614,410 + Psest_0561 0.24 -0.3 614,410 + Psest_0561 0.24 -0.3 614,410 + Psest_0561 0.24 -1.3 614,410 + Psest_0561 0.24 +0.0 614,410 + Psest_0561 0.24 -0.2 614,410 + Psest_0561 0.24 +0.4 614,410 + Psest_0561 0.24 +0.2 614,410 + Psest_0561 0.24 -1.0 614,410 + Psest_0561 0.24 -0.8 614,410 + Psest_0561 0.24 -2.0 614,411 - Psest_0561 0.24 +0.3 614,411 - Psest_0561 0.24 +0.1 614,411 - Psest_0561 0.24 +1.0 614,411 - Psest_0561 0.24 +1.7 614,411 - Psest_0561 0.24 +2.3 614,411 - Psest_0561 0.24 +0.2 614,411 - Psest_0561 0.24 +0.4 614,411 - Psest_0561 0.24 +1.4 614,411 - Psest_0561 0.24 +0.6 614,411 - Psest_0561 0.24 +0.5 614,411 - Psest_0561 0.24 +2.4 614,411 - Psest_0561 0.24 -0.2 614,411 - Psest_0561 0.24 +1.0 614,617 + Psest_0561 0.49 +0.3 614,617 + Psest_0561 0.49 +0.9 614,618 - Psest_0561 0.49 -0.7 614,618 - Psest_0561 0.49 +0.4 614,680 + Psest_0561 0.56 +1.6 614,681 - Psest_0561 0.56 +2.1 614,681 - Psest_0561 0.56 +1.2 614,750 - Psest_0561 0.65 +0.4 614,834 + Psest_0561 0.75 +0.3 614,912 - Psest_0561 0.84 +1.1 615,061 + +0.3 615,083 + +1.0 615,144 - -1.0 615,144 - +1.9 615,144 - +0.4 615,190 + +0.2 615,214 + +1.9 615,214 + -0.3 615,316 + +1.0 615,316 + +0.0 615,316 + -0.1 615,317 - +0.2 615,317 - +0.6 615,397 + +0.8 615,398 - +0.2 615,470 - -0.5 615,847 + Psest_0562 0.17 +1.8 615,847 + Psest_0562 0.17 +2.8 615,847 + Psest_0562 0.17 -0.7 615,847 + Psest_0562 0.17 +1.7 615,847 + Psest_0562 0.17 +2.4 615,847 + Psest_0562 0.17 +1.5 615,847 + Psest_0562 0.17 +2.1 615,847 + Psest_0562 0.17 +2.3 615,847 + Psest_0562 0.17 +2.0 615,847 + Psest_0562 0.17 +2.2 615,847 + Psest_0562 0.17 +0.1 615,847 + Psest_0562 0.17 -0.2 615,847 + Psest_0562 0.17 +1.5 615,848 - Psest_0562 0.17 +0.4 615,848 - Psest_0562 0.17 -1.0 615,848 - Psest_0562 0.17 -0.3 615,848 - Psest_0562 0.17 -0.4 615,848 - Psest_0562 0.17 -2.8 615,848 - Psest_0562 0.17 +0.2 615,848 - Psest_0562 0.17 -0.3 615,848 - Psest_0562 0.17 -1.0 615,848 - Psest_0562 0.17 +0.7 615,848 - Psest_0562 0.17 +0.3 615,869 + Psest_0562 0.17 +1.4 616,503 + Psest_0562 0.35 +2.1 616,503 + Psest_0562 0.35 +1.3 616,504 - Psest_0562 0.35 +0.7 616,551 - Psest_0562 0.37 -1.1 616,551 - Psest_0562 0.37 -1.3 616,660 + Psest_0562 0.40 +0.9 617,056 - Psest_0562 0.51 -0.5 617,056 - Psest_0562 0.51 +1.1 617,385 + Psest_0562 0.60 +1.3 617,569 - Psest_0562 0.65 +1.3 618,364 + Psest_0562 0.88 +1.0 618,365 - Psest_0562 0.88 +1.4 618,365 - Psest_0562 0.88 +0.9 618,376 + Psest_0562 0.88 -0.4 618,377 - Psest_0562 0.88 +0.6 618,567 + +0.2 618,575 - +0.4 618,595 + -0.0 618,595 + +0.7 618,595 + +1.6 618,595 + +1.2 618,595 + -0.5 618,595 + +0.9 618,595 + +0.6 618,595 + +0.5 618,595 + -0.6 618,595 + +1.9 618,595 + +2.0 618,596 - +2.4 618,596 - -0.8 618,596 - +1.3 618,596 - +0.5 618,596 - +1.0 618,596 - +1.1 618,596 - -0.3 618,596 - -1.1 618,596 - +0.3 618,596 - -0.3 618,596 - +0.0 618,786 + +1.0 618,786 + +0.8 618,786 + +0.2 618,786 + -1.1 618,787 - +1.1 618,904 + +1.1 618,904 + +1.9 618,905 - +0.3 618,905 - +0.9 618,905 - +1.2 618,905 - +1.4 618,905 - +2.3 618,924 + +0.8 618,924 + +1.4 618,924 + +0.4 618,924 + +0.0 618,924 + +0.5 618,924 + +1.0 618,924 + -0.7 618,924 + -0.1 618,925 - +1.7 618,991 + Psest_0563 0.13 +1.2 619,021 + Psest_0563 0.17 +1.5 619,021 + Psest_0563 0.17 +1.0 619,022 - Psest_0563 0.17 +1.9 619,252 + Psest_0563 0.50 -1.1 619,252 + Psest_0563 0.50 +0.5 619,252 + Psest_0563 0.50 +1.0 619,252 + Psest_0563 0.50 +0.0 619,253 - Psest_0563 0.50 +0.7 619,364 - Psest_0563 0.66 +0.2 619,364 - Psest_0563 0.66 +0.7 619,573 + +0.7 619,573 + +0.9 619,574 - +1.5 619,639 + -3.0 619,639 + -0.8 619,643 + -0.5 619,643 + +0.3 619,643 + +0.7 619,643 + +0.4 619,644 - +2.7 619,654 + -0.3 619,655 - +0.6 619,693 + -1.9 619,693 + -1.3 619,781 + -0.7 619,781 + -0.1 619,781 + -2.0 619,781 + +0.1 619,781 + -1.0 619,782 - -0.9 619,782 - -0.3 619,782 - +0.0 619,782 - +0.7 619,782 - +0.4 619,782 - +0.9
Or see this region's nucleotide sequence