Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0558 and Psest_0559 overlap by 4 nucleotides Psest_0559 and Psest_0560 are separated by 1 nucleotides Psest_0560 and Psest_0561 are separated by 131 nucleotides Psest_0561 and Psest_0562 are separated by 204 nucleotides
Psest_0558: Psest_0558 - urease, beta subunit, at 612,910 to 613,215
_0558
Psest_0559: Psest_0559 - Sortase and related acyltransferases, at 613,212 to 613,775
_0559
Psest_0560: Psest_0560 - Urease (EC 3.5.1.5) <small>(from data)</small>, at 613,777 to 614,079
_0560
Psest_0561: Psest_0561 - Urease accessory protein UreH, at 614,211 to 615,044
_0561
Psest_0562: Psest_0562 - magnesium-translocating P-type ATPase, at 615,249 to 618,797
_0562
Position (kb) 614
615
616 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 613.331 kb on + strand, within Psest_0559 at 613.331 kb on + strand, within Psest_0559 at 613.332 kb on - strand, within Psest_0559 at 613.332 kb on - strand, within Psest_0559 at 613.462 kb on + strand, within Psest_0559 at 613.462 kb on + strand, within Psest_0559 at 613.463 kb on - strand, within Psest_0559 at 613.526 kb on - strand, within Psest_0559 at 613.669 kb on + strand, within Psest_0559 at 613.669 kb on + strand, within Psest_0559 at 613.669 kb on + strand, within Psest_0559 at 613.669 kb on + strand, within Psest_0559 at 613.669 kb on + strand, within Psest_0559 at 613.669 kb on + strand, within Psest_0559 at 613.670 kb on - strand, within Psest_0559 at 613.670 kb on - strand, within Psest_0559 at 613.670 kb on - strand, within Psest_0559 at 613.670 kb on - strand, within Psest_0559 at 613.670 kb on - strand, within Psest_0559 at 613.670 kb on - strand, within Psest_0559 at 613.670 kb on - strand, within Psest_0559 at 613.670 kb on - strand, within Psest_0559 at 613.673 kb on + strand, within Psest_0559 at 613.673 kb on + strand, within Psest_0559 at 613.673 kb on + strand, within Psest_0559 at 613.674 kb on - strand, within Psest_0559 at 613.674 kb on - strand, within Psest_0559 at 613.674 kb on - strand, within Psest_0559 at 613.674 kb on - strand, within Psest_0559 at 613.674 kb on - strand, within Psest_0559 at 613.713 kb on + strand, within Psest_0559 at 613.713 kb on + strand, within Psest_0559 at 613.713 kb on + strand, within Psest_0559 at 613.713 kb on + strand, within Psest_0559 at 613.713 kb on + strand, within Psest_0559 at 613.713 kb on + strand, within Psest_0559 at 613.714 kb on - strand, within Psest_0559 at 613.714 kb on - strand, within Psest_0559 at 613.714 kb on - strand, within Psest_0559 at 613.714 kb on - strand, within Psest_0559 at 613.714 kb on - strand, within Psest_0559 at 613.714 kb on - strand, within Psest_0559 at 613.714 kb on - strand, within Psest_0559 at 613.714 kb on - strand, within Psest_0559 at 613.759 kb on + strand at 613.904 kb on + strand, within Psest_0560 at 613.966 kb on - strand, within Psest_0560 at 613.966 kb on - strand, within Psest_0560 at 613.966 kb on - strand, within Psest_0560 at 613.966 kb on - strand, within Psest_0560 at 613.966 kb on - strand, within Psest_0560 at 613.966 kb on - strand, within Psest_0560 at 613.967 kb on + strand, within Psest_0560 at 613.967 kb on + strand, within Psest_0560 at 613.967 kb on + strand, within Psest_0560 at 613.967 kb on + strand, within Psest_0560 at 613.967 kb on + strand, within Psest_0560 at 613.967 kb on + strand, within Psest_0560 at 613.967 kb on + strand, within Psest_0560 at 613.967 kb on + strand, within Psest_0560 at 613.967 kb on + strand, within Psest_0560 at 613.967 kb on + strand, within Psest_0560 at 613.967 kb on + strand, within Psest_0560 at 613.967 kb on + strand, within Psest_0560 at 613.967 kb on + strand, within Psest_0560 at 613.968 kb on - strand, within Psest_0560 at 613.968 kb on - strand, within Psest_0560 at 613.968 kb on - strand, within Psest_0560 at 613.968 kb on - strand, within Psest_0560 at 613.968 kb on - strand, within Psest_0560 at 613.968 kb on - strand, within Psest_0560 at 613.968 kb on - strand, within Psest_0560 at 613.968 kb on - strand, within Psest_0560 at 613.968 kb on - strand, within Psest_0560 at 613.968 kb on - strand, within Psest_0560 at 613.968 kb on - strand, within Psest_0560 at 613.986 kb on - strand, within Psest_0560 at 614.094 kb on + strand at 614.216 kb on + strand at 614.277 kb on + strand at 614.278 kb on - strand at 614.278 kb on - strand at 614.278 kb on - strand at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.617 kb on + strand, within Psest_0561 at 614.617 kb on + strand, within Psest_0561 at 614.618 kb on - strand, within Psest_0561 at 614.618 kb on - strand, within Psest_0561 at 614.680 kb on + strand, within Psest_0561 at 614.681 kb on - strand, within Psest_0561 at 614.681 kb on - strand, within Psest_0561 at 614.750 kb on - strand, within Psest_0561 at 614.834 kb on + strand, within Psest_0561 at 614.912 kb on - strand, within Psest_0561 at 615.061 kb on + strand at 615.083 kb on + strand at 615.144 kb on - strand at 615.144 kb on - strand at 615.144 kb on - strand at 615.190 kb on + strand at 615.214 kb on + strand at 615.214 kb on + strand at 615.316 kb on + strand at 615.316 kb on + strand at 615.316 kb on + strand at 615.317 kb on - strand at 615.317 kb on - strand at 615.397 kb on + strand at 615.398 kb on - strand at 615.470 kb on - strand at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.869 kb on + strand, within Psest_0562
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 613,331 + Psest_0559 0.21 +1.9 613,331 + Psest_0559 0.21 -0.5 613,332 - Psest_0559 0.21 -1.3 613,332 - Psest_0559 0.21 -2.4 613,462 + Psest_0559 0.44 +0.1 613,462 + Psest_0559 0.44 +0.8 613,463 - Psest_0559 0.45 +0.9 613,526 - Psest_0559 0.56 +1.0 613,669 + Psest_0559 0.81 +0.1 613,669 + Psest_0559 0.81 -2.2 613,669 + Psest_0559 0.81 -0.6 613,669 + Psest_0559 0.81 -0.5 613,669 + Psest_0559 0.81 -0.6 613,669 + Psest_0559 0.81 -0.6 613,670 - Psest_0559 0.81 +0.5 613,670 - Psest_0559 0.81 -1.5 613,670 - Psest_0559 0.81 +0.8 613,670 - Psest_0559 0.81 -0.2 613,670 - Psest_0559 0.81 +1.2 613,670 - Psest_0559 0.81 -2.5 613,670 - Psest_0559 0.81 -0.4 613,670 - Psest_0559 0.81 -0.0 613,673 + Psest_0559 0.82 -1.4 613,673 + Psest_0559 0.82 -0.7 613,673 + Psest_0559 0.82 +0.6 613,674 - Psest_0559 0.82 +0.8 613,674 - Psest_0559 0.82 +1.0 613,674 - Psest_0559 0.82 -1.5 613,674 - Psest_0559 0.82 -0.7 613,674 - Psest_0559 0.82 -0.3 613,713 + Psest_0559 0.89 +0.1 613,713 + Psest_0559 0.89 -0.4 613,713 + Psest_0559 0.89 +0.1 613,713 + Psest_0559 0.89 -1.8 613,713 + Psest_0559 0.89 +1.7 613,713 + Psest_0559 0.89 -0.8 613,714 - Psest_0559 0.89 -1.2 613,714 - Psest_0559 0.89 -0.6 613,714 - Psest_0559 0.89 -0.1 613,714 - Psest_0559 0.89 -0.9 613,714 - Psest_0559 0.89 +0.6 613,714 - Psest_0559 0.89 -0.0 613,714 - Psest_0559 0.89 +0.4 613,714 - Psest_0559 0.89 +0.7 613,759 + +0.2 613,904 + Psest_0560 0.42 +0.2 613,966 - Psest_0560 0.62 -0.4 613,966 - Psest_0560 0.62 -0.9 613,966 - Psest_0560 0.62 -0.1 613,966 - Psest_0560 0.62 -0.3 613,966 - Psest_0560 0.62 -0.2 613,966 - Psest_0560 0.62 -0.5 613,967 + Psest_0560 0.63 +1.3 613,967 + Psest_0560 0.63 +1.0 613,967 + Psest_0560 0.63 +0.4 613,967 + Psest_0560 0.63 -0.5 613,967 + Psest_0560 0.63 -0.4 613,967 + Psest_0560 0.63 +1.1 613,967 + Psest_0560 0.63 -0.5 613,967 + Psest_0560 0.63 +0.6 613,967 + Psest_0560 0.63 +0.2 613,967 + Psest_0560 0.63 +1.6 613,967 + Psest_0560 0.63 +0.5 613,967 + Psest_0560 0.63 +0.5 613,967 + Psest_0560 0.63 +0.1 613,968 - Psest_0560 0.63 -0.3 613,968 - Psest_0560 0.63 -0.2 613,968 - Psest_0560 0.63 -1.3 613,968 - Psest_0560 0.63 +1.2 613,968 - Psest_0560 0.63 -0.6 613,968 - Psest_0560 0.63 -1.4 613,968 - Psest_0560 0.63 -1.3 613,968 - Psest_0560 0.63 +0.9 613,968 - Psest_0560 0.63 -0.2 613,968 - Psest_0560 0.63 -0.3 613,968 - Psest_0560 0.63 -0.8 613,986 - Psest_0560 0.69 -0.1 614,094 + -0.2 614,216 + -0.6 614,277 + +0.7 614,278 - +0.6 614,278 - +0.6 614,278 - +1.0 614,410 + Psest_0561 0.24 +3.0 614,410 + Psest_0561 0.24 -0.3 614,410 + Psest_0561 0.24 -0.3 614,410 + Psest_0561 0.24 -1.3 614,410 + Psest_0561 0.24 +0.0 614,410 + Psest_0561 0.24 -0.2 614,410 + Psest_0561 0.24 +0.4 614,410 + Psest_0561 0.24 +0.2 614,410 + Psest_0561 0.24 -1.0 614,410 + Psest_0561 0.24 -0.8 614,410 + Psest_0561 0.24 -2.0 614,411 - Psest_0561 0.24 +0.3 614,411 - Psest_0561 0.24 +0.1 614,411 - Psest_0561 0.24 +1.0 614,411 - Psest_0561 0.24 +1.7 614,411 - Psest_0561 0.24 +2.3 614,411 - Psest_0561 0.24 +0.2 614,411 - Psest_0561 0.24 +0.4 614,411 - Psest_0561 0.24 +1.4 614,411 - Psest_0561 0.24 +0.6 614,411 - Psest_0561 0.24 +0.5 614,411 - Psest_0561 0.24 +2.4 614,411 - Psest_0561 0.24 -0.2 614,411 - Psest_0561 0.24 +1.0 614,617 + Psest_0561 0.49 +0.3 614,617 + Psest_0561 0.49 +0.9 614,618 - Psest_0561 0.49 -0.7 614,618 - Psest_0561 0.49 +0.4 614,680 + Psest_0561 0.56 +1.6 614,681 - Psest_0561 0.56 +2.1 614,681 - Psest_0561 0.56 +1.2 614,750 - Psest_0561 0.65 +0.4 614,834 + Psest_0561 0.75 +0.3 614,912 - Psest_0561 0.84 +1.1 615,061 + +0.3 615,083 + +1.0 615,144 - -1.0 615,144 - +1.9 615,144 - +0.4 615,190 + +0.2 615,214 + +1.9 615,214 + -0.3 615,316 + +1.0 615,316 + +0.0 615,316 + -0.1 615,317 - +0.2 615,317 - +0.6 615,397 + +0.8 615,398 - +0.2 615,470 - -0.5 615,847 + Psest_0562 0.17 +1.8 615,847 + Psest_0562 0.17 +2.8 615,847 + Psest_0562 0.17 -0.7 615,847 + Psest_0562 0.17 +1.7 615,847 + Psest_0562 0.17 +2.4 615,847 + Psest_0562 0.17 +1.5 615,847 + Psest_0562 0.17 +2.1 615,847 + Psest_0562 0.17 +2.3 615,847 + Psest_0562 0.17 +2.0 615,847 + Psest_0562 0.17 +2.2 615,847 + Psest_0562 0.17 +0.1 615,847 + Psest_0562 0.17 -0.2 615,847 + Psest_0562 0.17 +1.5 615,848 - Psest_0562 0.17 +0.4 615,848 - Psest_0562 0.17 -1.0 615,848 - Psest_0562 0.17 -0.3 615,848 - Psest_0562 0.17 -0.4 615,848 - Psest_0562 0.17 -2.8 615,848 - Psest_0562 0.17 +0.2 615,848 - Psest_0562 0.17 -0.3 615,848 - Psest_0562 0.17 -1.0 615,848 - Psest_0562 0.17 +0.7 615,848 - Psest_0562 0.17 +0.3 615,869 + Psest_0562 0.17 +1.4
Or see this region's nucleotide sequence