Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0546

Experiment: Def Carbenicillin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0544 and Psest_0545 are separated by 76 nucleotidesPsest_0545 and Psest_0546 overlap by 4 nucleotidesPsest_0546 and Psest_0547 overlap by 4 nucleotidesPsest_0547 and Psest_0548 overlap by 4 nucleotides Psest_0544: Psest_0544 - Hydrogenase/urease accessory protein, at 599,707 to 600,279 _0544 Psest_0545: Psest_0545 - urease accessory protein UreG, at 600,356 to 600,970 _0545 Psest_0546: Psest_0546 - hypothetical protein, at 600,967 to 601,632 _0546 Psest_0547: Psest_0547 - Urease accessory protein UreF, at 601,629 to 602,321 _0547 Psest_0548: Psest_0548 - Urease accessory protein UreE, at 602,318 to 602,818 _0548 Position (kb) 600 601 602Strain fitness (log2 ratio) -2 -1 0 1 2 3at 600.124 kb on + strand, within Psest_0544at 600.125 kb on - strand, within Psest_0544at 600.271 kb on + strandat 600.271 kb on + strandat 600.271 kb on + strandat 600.271 kb on + strandat 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.607 kb on - strand, within Psest_0545at 600.607 kb on - strand, within Psest_0545at 600.607 kb on - strand, within Psest_0545at 600.607 kb on - strand, within Psest_0545at 600.607 kb on - strand, within Psest_0545at 600.607 kb on - strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.873 kb on + strand, within Psest_0545at 601.060 kb on - strand, within Psest_0546at 601.080 kb on + strand, within Psest_0546at 601.099 kb on + strand, within Psest_0546at 601.099 kb on + strand, within Psest_0546at 601.168 kb on + strand, within Psest_0546at 601.168 kb on + strand, within Psest_0546at 601.168 kb on + strand, within Psest_0546at 601.168 kb on + strand, within Psest_0546at 601.168 kb on + strand, within Psest_0546at 601.169 kb on - strand, within Psest_0546at 601.317 kb on + strand, within Psest_0546at 601.317 kb on + strand, within Psest_0546at 601.317 kb on + strand, within Psest_0546at 601.317 kb on + strand, within Psest_0546at 601.317 kb on + strand, within Psest_0546at 601.362 kb on + strand, within Psest_0546at 601.429 kb on + strand, within Psest_0546at 601.595 kb on - strandat 601.637 kb on + strandat 601.637 kb on + strandat 601.638 kb on - strandat 601.638 kb on - strandat 601.638 kb on - strandat 601.638 kb on - strandat 601.638 kb on - strandat 601.638 kb on - strandat 601.651 kb on + strandat 601.651 kb on + strandat 601.652 kb on - strandat 601.652 kb on - strandat 602.239 kb on + strand, within Psest_0547at 602.239 kb on + strand, within Psest_0547at 602.239 kb on + strand, within Psest_0547at 602.240 kb on - strand, within Psest_0547at 602.246 kb on - strand, within Psest_0547at 602.327 kb on + strandat 602.356 kb on - strandat 602.484 kb on + strand, within Psest_0548at 602.484 kb on + strand, within Psest_0548at 602.484 kb on + strand, within Psest_0548at 602.484 kb on + strand, within Psest_0548at 602.485 kb on - strand, within Psest_0548at 602.485 kb on - strand, within Psest_0548at 602.485 kb on - strand, within Psest_0548at 602.485 kb on - strand, within Psest_0548at 602.485 kb on - strand, within Psest_0548

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml
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600,124 + Psest_0544 0.73 -0.6
600,125 - Psest_0544 0.73 +1.0
600,271 + +0.9
600,271 + +0.4
600,271 + +0.7
600,271 + +1.2
600,606 + Psest_0545 0.41 +1.1
600,606 + Psest_0545 0.41 -0.0
600,606 + Psest_0545 0.41 +1.3
600,606 + Psest_0545 0.41 +0.4
600,606 + Psest_0545 0.41 +2.0
600,606 + Psest_0545 0.41 +0.7
600,606 + Psest_0545 0.41 +2.8
600,606 + Psest_0545 0.41 +1.1
600,606 + Psest_0545 0.41 -0.4
600,606 + Psest_0545 0.41 +0.5
600,606 + Psest_0545 0.41 +3.0
600,606 + Psest_0545 0.41 +1.0
600,606 + Psest_0545 0.41 +0.6
600,607 - Psest_0545 0.41 -0.3
600,607 - Psest_0545 0.41 +1.5
600,607 - Psest_0545 0.41 -0.8
600,607 - Psest_0545 0.41 +2.0
600,607 - Psest_0545 0.41 +1.3
600,607 - Psest_0545 0.41 +1.0
600,843 + Psest_0545 0.79 -0.7
600,843 + Psest_0545 0.79 +2.7
600,843 + Psest_0545 0.79 +0.3
600,843 + Psest_0545 0.79 -1.4
600,843 + Psest_0545 0.79 +2.0
600,843 + Psest_0545 0.79 +1.7
600,843 + Psest_0545 0.79 +1.9
600,843 + Psest_0545 0.79 +0.7
600,843 + Psest_0545 0.79 +1.4
600,843 + Psest_0545 0.79 +1.3
600,843 + Psest_0545 0.79 +0.4
600,844 - Psest_0545 0.79 -1.9
600,844 - Psest_0545 0.79 +1.1
600,844 - Psest_0545 0.79 -0.8
600,844 - Psest_0545 0.79 -0.0
600,844 - Psest_0545 0.79 -1.3
600,844 - Psest_0545 0.79 +1.2
600,844 - Psest_0545 0.79 -1.8
600,844 - Psest_0545 0.79 -1.9
600,844 - Psest_0545 0.79 +0.1
600,873 + Psest_0545 0.84 +0.1
601,060 - Psest_0546 0.14 -0.5
601,080 + Psest_0546 0.17 -0.0
601,099 + Psest_0546 0.20 +1.9
601,099 + Psest_0546 0.20 +0.4
601,168 + Psest_0546 0.30 +1.4
601,168 + Psest_0546 0.30 +2.1
601,168 + Psest_0546 0.30 +2.1
601,168 + Psest_0546 0.30 +1.3
601,168 + Psest_0546 0.30 +1.2
601,169 - Psest_0546 0.30 +1.4
601,317 + Psest_0546 0.53 +1.3
601,317 + Psest_0546 0.53 +1.5
601,317 + Psest_0546 0.53 +0.3
601,317 + Psest_0546 0.53 +1.1
601,317 + Psest_0546 0.53 +0.3
601,362 + Psest_0546 0.59 +2.0
601,429 + Psest_0546 0.69 +0.0
601,595 - +0.9
601,637 + -0.6
601,637 + +1.0
601,638 - +1.2
601,638 - +0.1
601,638 - -0.1
601,638 - +1.1
601,638 - +0.9
601,638 - +1.2
601,651 + +0.1
601,651 + -1.0
601,652 - +1.0
601,652 - +1.6
602,239 + Psest_0547 0.88 +0.1
602,239 + Psest_0547 0.88 +1.5
602,239 + Psest_0547 0.88 +1.7
602,240 - Psest_0547 0.88 -1.1
602,246 - Psest_0547 0.89 +0.4
602,327 + +0.2
602,356 - +0.4
602,484 + Psest_0548 0.33 -0.6
602,484 + Psest_0548 0.33 +0.7
602,484 + Psest_0548 0.33 +0.3
602,484 + Psest_0548 0.33 +0.4
602,485 - Psest_0548 0.33 -1.4
602,485 - Psest_0548 0.33 +0.0
602,485 - Psest_0548 0.33 +0.0
602,485 - Psest_0548 0.33 +0.3
602,485 - Psest_0548 0.33 -1.1

Or see this region's nucleotide sequence