Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0544

Experiment: Def Carbenicillin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0542 and Psest_0543 are separated by 80 nucleotidesPsest_0543 and Psest_0544 are separated by 15 nucleotidesPsest_0544 and Psest_0545 are separated by 76 nucleotidesPsest_0545 and Psest_0546 overlap by 4 nucleotides Psest_0542: Psest_0542 - AMP nucleosidase, at 597,893 to 599,368 _0542 Psest_0543: Psest_0543 - Protein of unknown function (DUF2789)., at 599,449 to 599,691 _0543 Psest_0544: Psest_0544 - Hydrogenase/urease accessory protein, at 599,707 to 600,279 _0544 Psest_0545: Psest_0545 - urease accessory protein UreG, at 600,356 to 600,970 _0545 Psest_0546: Psest_0546 - hypothetical protein, at 600,967 to 601,632 _0546 Position (kb) 599 600 601Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 598.798 kb on - strand, within Psest_0542at 598.865 kb on + strand, within Psest_0542at 598.865 kb on + strand, within Psest_0542at 598.865 kb on + strand, within Psest_0542at 598.866 kb on - strand, within Psest_0542at 598.883 kb on + strand, within Psest_0542at 598.883 kb on + strand, within Psest_0542at 598.883 kb on + strand, within Psest_0542at 598.883 kb on + strand, within Psest_0542at 598.883 kb on + strand, within Psest_0542at 598.884 kb on - strand, within Psest_0542at 598.884 kb on - strand, within Psest_0542at 598.884 kb on - strand, within Psest_0542at 598.884 kb on - strand, within Psest_0542at 598.884 kb on - strand, within Psest_0542at 599.171 kb on + strand, within Psest_0542at 599.246 kb on + strandat 599.246 kb on + strandat 599.247 kb on - strandat 599.247 kb on - strandat 599.247 kb on - strandat 599.408 kb on + strandat 599.409 kb on - strandat 599.415 kb on - strandat 599.415 kb on - strandat 599.415 kb on - strandat 599.415 kb on - strandat 599.475 kb on + strand, within Psest_0543at 599.563 kb on + strand, within Psest_0543at 600.124 kb on + strand, within Psest_0544at 600.125 kb on - strand, within Psest_0544at 600.271 kb on + strandat 600.271 kb on + strandat 600.271 kb on + strandat 600.271 kb on + strandat 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.607 kb on - strand, within Psest_0545at 600.607 kb on - strand, within Psest_0545at 600.607 kb on - strand, within Psest_0545at 600.607 kb on - strand, within Psest_0545at 600.607 kb on - strand, within Psest_0545at 600.607 kb on - strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.873 kb on + strand, within Psest_0545at 601.060 kb on - strand, within Psest_0546at 601.080 kb on + strand, within Psest_0546at 601.099 kb on + strand, within Psest_0546at 601.099 kb on + strand, within Psest_0546at 601.168 kb on + strand, within Psest_0546at 601.168 kb on + strand, within Psest_0546at 601.168 kb on + strand, within Psest_0546at 601.168 kb on + strand, within Psest_0546at 601.168 kb on + strand, within Psest_0546at 601.169 kb on - strand, within Psest_0546

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml
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598,798 - Psest_0542 0.61 +0.7
598,865 + Psest_0542 0.66 +0.5
598,865 + Psest_0542 0.66 +0.7
598,865 + Psest_0542 0.66 +1.9
598,866 - Psest_0542 0.66 +1.1
598,883 + Psest_0542 0.67 +0.1
598,883 + Psest_0542 0.67 +0.7
598,883 + Psest_0542 0.67 +2.1
598,883 + Psest_0542 0.67 -1.1
598,883 + Psest_0542 0.67 -0.4
598,884 - Psest_0542 0.67 +0.7
598,884 - Psest_0542 0.67 +0.4
598,884 - Psest_0542 0.67 +1.2
598,884 - Psest_0542 0.67 -0.0
598,884 - Psest_0542 0.67 +1.6
599,171 + Psest_0542 0.87 +1.4
599,246 + +4.3
599,246 + +1.7
599,247 - +0.5
599,247 - -0.3
599,247 - -0.3
599,408 + +0.9
599,409 - +2.1
599,415 - +0.4
599,415 - +3.0
599,415 - +2.0
599,415 - -0.0
599,475 + Psest_0543 0.11 +0.0
599,563 + Psest_0543 0.47 +3.0
600,124 + Psest_0544 0.73 -0.6
600,125 - Psest_0544 0.73 +1.0
600,271 + +0.9
600,271 + +0.4
600,271 + +0.7
600,271 + +1.2
600,606 + Psest_0545 0.41 +1.1
600,606 + Psest_0545 0.41 -0.0
600,606 + Psest_0545 0.41 +1.3
600,606 + Psest_0545 0.41 +0.4
600,606 + Psest_0545 0.41 +2.0
600,606 + Psest_0545 0.41 +0.7
600,606 + Psest_0545 0.41 +2.8
600,606 + Psest_0545 0.41 +1.1
600,606 + Psest_0545 0.41 -0.4
600,606 + Psest_0545 0.41 +0.5
600,606 + Psest_0545 0.41 +3.0
600,606 + Psest_0545 0.41 +1.0
600,606 + Psest_0545 0.41 +0.6
600,607 - Psest_0545 0.41 -0.3
600,607 - Psest_0545 0.41 +1.5
600,607 - Psest_0545 0.41 -0.8
600,607 - Psest_0545 0.41 +2.0
600,607 - Psest_0545 0.41 +1.3
600,607 - Psest_0545 0.41 +1.0
600,843 + Psest_0545 0.79 -0.7
600,843 + Psest_0545 0.79 +2.7
600,843 + Psest_0545 0.79 +0.3
600,843 + Psest_0545 0.79 -1.4
600,843 + Psest_0545 0.79 +2.0
600,843 + Psest_0545 0.79 +1.7
600,843 + Psest_0545 0.79 +1.9
600,843 + Psest_0545 0.79 +0.7
600,843 + Psest_0545 0.79 +1.4
600,843 + Psest_0545 0.79 +1.3
600,843 + Psest_0545 0.79 +0.4
600,844 - Psest_0545 0.79 -1.9
600,844 - Psest_0545 0.79 +1.1
600,844 - Psest_0545 0.79 -0.8
600,844 - Psest_0545 0.79 -0.0
600,844 - Psest_0545 0.79 -1.3
600,844 - Psest_0545 0.79 +1.2
600,844 - Psest_0545 0.79 -1.8
600,844 - Psest_0545 0.79 -1.9
600,844 - Psest_0545 0.79 +0.1
600,873 + Psest_0545 0.84 +0.1
601,060 - Psest_0546 0.14 -0.5
601,080 + Psest_0546 0.17 -0.0
601,099 + Psest_0546 0.20 +1.9
601,099 + Psest_0546 0.20 +0.4
601,168 + Psest_0546 0.30 +1.4
601,168 + Psest_0546 0.30 +2.1
601,168 + Psest_0546 0.30 +2.1
601,168 + Psest_0546 0.30 +1.3
601,168 + Psest_0546 0.30 +1.2
601,169 - Psest_0546 0.30 +1.4

Or see this region's nucleotide sequence