Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0514 and Psest_0515 overlap by 4 nucleotides Psest_0515 and Psest_0516 are separated by 48 nucleotides
Psest_0514: Psest_0514 - lytic murein transglycosylase B, at 567,787 to 568,812
_0514
Psest_0515: Psest_0515 - rare lipoprotein A, at 568,809 to 569,801
_0515
Psest_0516: Psest_0516 - D-alanyl-D-alanine carboxypeptidase, at 569,850 to 571,007
_0516
Position (kb) 568
569
570 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 567.864 kb on + strand at 567.898 kb on + strand, within Psest_0514 at 567.898 kb on + strand, within Psest_0514 at 567.946 kb on + strand, within Psest_0514 at 567.996 kb on + strand, within Psest_0514 at 567.996 kb on + strand, within Psest_0514 at 567.996 kb on + strand, within Psest_0514 at 567.996 kb on + strand, within Psest_0514 at 567.996 kb on + strand, within Psest_0514 at 568.100 kb on + strand, within Psest_0514 at 568.101 kb on - strand, within Psest_0514 at 568.201 kb on + strand, within Psest_0514 at 568.201 kb on + strand, within Psest_0514 at 568.201 kb on + strand, within Psest_0514 at 568.201 kb on + strand, within Psest_0514 at 568.357 kb on + strand, within Psest_0514 at 568.357 kb on + strand, within Psest_0514 at 568.357 kb on + strand, within Psest_0514 at 568.408 kb on + strand, within Psest_0514 at 568.486 kb on + strand, within Psest_0514 at 568.486 kb on + strand, within Psest_0514 at 568.486 kb on + strand, within Psest_0514 at 568.720 kb on + strand at 568.720 kb on + strand at 568.735 kb on + strand at 568.737 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.754 kb on - strand at 568.754 kb on - strand at 568.754 kb on - strand at 568.754 kb on - strand at 568.754 kb on - strand at 568.754 kb on - strand at 568.754 kb on - strand at 568.754 kb on - strand at 568.754 kb on - strand at 568.754 kb on - strand at 568.754 kb on - strand at 568.754 kb on - strand at 568.817 kb on + strand at 568.817 kb on + strand at 568.817 kb on + strand at 569.025 kb on + strand, within Psest_0515 at 569.026 kb on - strand, within Psest_0515 at 569.026 kb on - strand, within Psest_0515 at 569.026 kb on - strand, within Psest_0515 at 569.040 kb on + strand, within Psest_0515 at 569.061 kb on + strand, within Psest_0515 at 569.061 kb on + strand, within Psest_0515 at 569.061 kb on + strand, within Psest_0515 at 569.061 kb on + strand, within Psest_0515 at 569.061 kb on + strand, within Psest_0515 at 569.160 kb on + strand, within Psest_0515 at 569.211 kb on + strand, within Psest_0515 at 569.211 kb on + strand, within Psest_0515 at 569.302 kb on + strand, within Psest_0515 at 569.674 kb on + strand, within Psest_0515 at 569.675 kb on - strand, within Psest_0515 at 569.675 kb on - strand, within Psest_0515 at 569.818 kb on - strand at 569.818 kb on - strand at 569.818 kb on - strand at 569.826 kb on + strand at 569.826 kb on + strand at 569.827 kb on - strand at 569.881 kb on + strand at 569.881 kb on + strand at 569.882 kb on - strand at 569.882 kb on - strand at 569.882 kb on - strand at 569.996 kb on - strand, within Psest_0516 at 570.060 kb on + strand, within Psest_0516 at 570.061 kb on - strand, within Psest_0516 at 570.061 kb on - strand, within Psest_0516 at 570.061 kb on - strand, within Psest_0516 at 570.061 kb on - strand, within Psest_0516 at 570.061 kb on - strand, within Psest_0516 at 570.061 kb on - strand, within Psest_0516 at 570.061 kb on - strand, within Psest_0516 at 570.061 kb on - strand, within Psest_0516 at 570.152 kb on + strand, within Psest_0516 at 570.153 kb on - strand, within Psest_0516 at 570.153 kb on - strand, within Psest_0516 at 570.284 kb on + strand, within Psest_0516 at 570.284 kb on + strand, within Psest_0516 at 570.284 kb on + strand, within Psest_0516 at 570.285 kb on - strand, within Psest_0516 at 570.285 kb on - strand, within Psest_0516 at 570.285 kb on - strand, within Psest_0516 at 570.285 kb on - strand, within Psest_0516 at 570.408 kb on + strand, within Psest_0516 at 570.408 kb on + strand, within Psest_0516 at 570.408 kb on + strand, within Psest_0516 at 570.408 kb on + strand, within Psest_0516 at 570.408 kb on + strand, within Psest_0516 at 570.408 kb on + strand, within Psest_0516 at 570.408 kb on + strand, within Psest_0516 at 570.408 kb on + strand, within Psest_0516 at 570.408 kb on + strand, within Psest_0516 at 570.408 kb on + strand, within Psest_0516 at 570.408 kb on + strand, within Psest_0516 at 570.409 kb on - strand, within Psest_0516 at 570.409 kb on - strand, within Psest_0516 at 570.409 kb on - strand, within Psest_0516 at 570.409 kb on - strand, within Psest_0516 at 570.435 kb on + strand, within Psest_0516 at 570.435 kb on + strand, within Psest_0516 at 570.436 kb on - strand, within Psest_0516 at 570.436 kb on - strand, within Psest_0516 at 570.436 kb on - strand, within Psest_0516 at 570.436 kb on - strand, within Psest_0516 at 570.436 kb on - strand, within Psest_0516 at 570.436 kb on - strand, within Psest_0516 at 570.436 kb on - strand, within Psest_0516 at 570.436 kb on - strand, within Psest_0516 at 570.436 kb on - strand, within Psest_0516 at 570.436 kb on - strand, within Psest_0516 at 570.436 kb on - strand, within Psest_0516 at 570.436 kb on - strand, within Psest_0516 at 570.436 kb on - strand, within Psest_0516 at 570.436 kb on - strand, within Psest_0516 at 570.436 kb on - strand, within Psest_0516 at 570.657 kb on + strand, within Psest_0516 at 570.658 kb on - strand, within Psest_0516 at 570.690 kb on + strand, within Psest_0516 at 570.691 kb on - strand, within Psest_0516 at 570.702 kb on - strand, within Psest_0516
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 567,864 + +0.1 567,898 + Psest_0514 0.11 -0.6 567,898 + Psest_0514 0.11 -2.1 567,946 + Psest_0514 0.15 +0.1 567,996 + Psest_0514 0.20 -1.3 567,996 + Psest_0514 0.20 +0.5 567,996 + Psest_0514 0.20 -1.8 567,996 + Psest_0514 0.20 +2.3 567,996 + Psest_0514 0.20 -2.5 568,100 + Psest_0514 0.31 -1.0 568,101 - Psest_0514 0.31 +1.5 568,201 + Psest_0514 0.40 -2.4 568,201 + Psest_0514 0.40 -2.3 568,201 + Psest_0514 0.40 -0.8 568,201 + Psest_0514 0.40 -2.0 568,357 + Psest_0514 0.56 -2.6 568,357 + Psest_0514 0.56 -2.1 568,357 + Psest_0514 0.56 -1.6 568,408 + Psest_0514 0.61 -1.8 568,486 + Psest_0514 0.68 -1.5 568,486 + Psest_0514 0.68 -2.5 568,486 + Psest_0514 0.68 -1.4 568,720 + -1.5 568,720 + +0.5 568,735 + -1.2 568,737 + -1.1 568,753 + -1.0 568,753 + +0.4 568,753 + -2.1 568,753 + -2.2 568,753 + -1.6 568,753 + -0.8 568,753 + -2.7 568,753 + -1.9 568,753 + -1.3 568,753 + -0.5 568,753 + -1.9 568,753 + -0.6 568,753 + -0.0 568,753 + -0.8 568,753 + -1.3 568,753 + -0.7 568,753 + -1.4 568,753 + -1.7 568,753 + -0.7 568,753 + -1.3 568,753 + -2.5 568,753 + +0.1 568,753 + -1.8 568,753 + +0.4 568,753 + -1.5 568,753 + +0.1 568,754 - +1.1 568,754 - +1.5 568,754 - +0.7 568,754 - +2.1 568,754 - +0.4 568,754 - -1.3 568,754 - +0.7 568,754 - +2.1 568,754 - +0.1 568,754 - +0.7 568,754 - -1.0 568,754 - +1.5 568,817 + -0.9 568,817 + -0.4 568,817 + -0.5 569,025 + Psest_0515 0.22 +0.2 569,026 - Psest_0515 0.22 +0.5 569,026 - Psest_0515 0.22 +2.1 569,026 - Psest_0515 0.22 +3.1 569,040 + Psest_0515 0.23 +0.1 569,061 + Psest_0515 0.25 +0.5 569,061 + Psest_0515 0.25 -0.4 569,061 + Psest_0515 0.25 -2.6 569,061 + Psest_0515 0.25 -0.5 569,061 + Psest_0515 0.25 +2.1 569,160 + Psest_0515 0.35 +0.5 569,211 + Psest_0515 0.40 +0.7 569,211 + Psest_0515 0.40 -0.1 569,302 + Psest_0515 0.50 +0.7 569,674 + Psest_0515 0.87 +0.5 569,675 - Psest_0515 0.87 +0.2 569,675 - Psest_0515 0.87 -1.9 569,818 - -0.6 569,818 - -0.4 569,818 - +0.0 569,826 + -0.7 569,826 + -0.5 569,827 - -0.0 569,881 + +0.7 569,881 + +3.1 569,882 - +0.9 569,882 - +0.7 569,882 - -0.7 569,996 - Psest_0516 0.13 +0.2 570,060 + Psest_0516 0.18 -0.1 570,061 - Psest_0516 0.18 +1.0 570,061 - Psest_0516 0.18 -0.9 570,061 - Psest_0516 0.18 +0.5 570,061 - Psest_0516 0.18 +0.9 570,061 - Psest_0516 0.18 +0.4 570,061 - Psest_0516 0.18 -0.5 570,061 - Psest_0516 0.18 -1.4 570,061 - Psest_0516 0.18 +0.6 570,152 + Psest_0516 0.26 +0.1 570,153 - Psest_0516 0.26 +0.6 570,153 - Psest_0516 0.26 -1.2 570,284 + Psest_0516 0.37 -0.3 570,284 + Psest_0516 0.37 -1.4 570,284 + Psest_0516 0.37 -0.4 570,285 - Psest_0516 0.38 -0.1 570,285 - Psest_0516 0.38 +0.1 570,285 - Psest_0516 0.38 -0.2 570,285 - Psest_0516 0.38 -1.8 570,408 + Psest_0516 0.48 -1.2 570,408 + Psest_0516 0.48 +0.1 570,408 + Psest_0516 0.48 -2.2 570,408 + Psest_0516 0.48 -1.0 570,408 + Psest_0516 0.48 -0.0 570,408 + Psest_0516 0.48 -0.5 570,408 + Psest_0516 0.48 -0.9 570,408 + Psest_0516 0.48 +1.6 570,408 + Psest_0516 0.48 -0.2 570,408 + Psest_0516 0.48 -1.6 570,408 + Psest_0516 0.48 -1.8 570,409 - Psest_0516 0.48 -0.9 570,409 - Psest_0516 0.48 +1.9 570,409 - Psest_0516 0.48 -0.8 570,409 - Psest_0516 0.48 -0.9 570,435 + Psest_0516 0.51 +0.7 570,435 + Psest_0516 0.51 -0.6 570,436 - Psest_0516 0.51 +0.7 570,436 - Psest_0516 0.51 -0.3 570,436 - Psest_0516 0.51 +1.0 570,436 - Psest_0516 0.51 -0.2 570,436 - Psest_0516 0.51 +1.5 570,436 - Psest_0516 0.51 -0.1 570,436 - Psest_0516 0.51 -0.9 570,436 - Psest_0516 0.51 +0.3 570,436 - Psest_0516 0.51 +0.2 570,436 - Psest_0516 0.51 -1.3 570,436 - Psest_0516 0.51 -0.3 570,436 - Psest_0516 0.51 +0.2 570,436 - Psest_0516 0.51 +2.4 570,436 - Psest_0516 0.51 -0.7 570,436 - Psest_0516 0.51 -0.1 570,657 + Psest_0516 0.70 +0.1 570,658 - Psest_0516 0.70 +2.4 570,690 + Psest_0516 0.73 +1.5 570,691 - Psest_0516 0.73 -1.2 570,702 - Psest_0516 0.74 +0.4
Or see this region's nucleotide sequence