Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0500 and Psest_0501 are separated by 186 nucleotides Psest_0501 and Psest_0502 are separated by 19 nucleotides Psest_0502 and Psest_0503 are separated by 77 nucleotides Psest_0503 and Psest_0504 are separated by 225 nucleotides
Psest_0500: Psest_0500 - Oligoribonuclease (3'->5' exoribonuclease), at 554,917 to 555,459
_0500
Psest_0501: Psest_0501 - Predicted nucleoside-diphosphate-sugar epimerases, at 555,646 to 556,287
_0501
Psest_0502: Psest_0502 - Uncharacterized protein conserved in bacteria, at 556,307 to 557,980
_0502
Psest_0503: Psest_0503 - Acyl dehydratase, at 558,058 to 558,513
_0503
Psest_0504: Psest_0504 - Putative effector of murein hydrolase LrgA, at 558,739 to 559,101
_0504
Position (kb) 556
557
558 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 555.541 kb on + strand at 555.541 kb on + strand at 555.541 kb on + strand at 555.541 kb on + strand at 555.541 kb on + strand at 555.541 kb on + strand at 555.541 kb on + strand at 555.541 kb on + strand at 555.541 kb on + strand at 555.542 kb on - strand at 555.542 kb on - strand at 555.542 kb on - strand at 555.542 kb on - strand at 555.542 kb on - strand at 555.542 kb on - strand at 555.542 kb on - strand at 555.560 kb on + strand at 555.560 kb on + strand at 555.560 kb on + strand at 555.560 kb on + strand at 555.561 kb on - strand at 555.561 kb on - strand at 555.561 kb on - strand at 555.758 kb on + strand, within Psest_0501 at 555.758 kb on + strand, within Psest_0501 at 555.759 kb on - strand, within Psest_0501 at 555.914 kb on + strand, within Psest_0501 at 555.914 kb on + strand, within Psest_0501 at 556.283 kb on + strand at 556.283 kb on + strand at 556.283 kb on + strand at 556.283 kb on + strand at 556.283 kb on + strand at 556.283 kb on + strand at 556.283 kb on + strand at 556.283 kb on + strand at 556.283 kb on + strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.284 kb on - strand at 556.393 kb on - strand at 556.393 kb on - strand at 556.500 kb on + strand, within Psest_0502 at 556.500 kb on + strand, within Psest_0502 at 556.501 kb on - strand, within Psest_0502 at 556.501 kb on - strand, within Psest_0502 at 556.501 kb on - strand, within Psest_0502 at 556.501 kb on - strand, within Psest_0502 at 556.608 kb on + strand, within Psest_0502 at 556.625 kb on + strand, within Psest_0502 at 556.626 kb on - strand, within Psest_0502 at 556.626 kb on - strand, within Psest_0502 at 556.626 kb on - strand, within Psest_0502 at 556.716 kb on - strand, within Psest_0502 at 556.752 kb on + strand, within Psest_0502 at 556.753 kb on - strand, within Psest_0502 at 556.905 kb on - strand, within Psest_0502 at 556.917 kb on + strand, within Psest_0502 at 556.972 kb on + strand, within Psest_0502 at 556.972 kb on + strand, within Psest_0502 at 556.972 kb on + strand, within Psest_0502 at 556.972 kb on + strand, within Psest_0502 at 556.972 kb on + strand, within Psest_0502 at 556.972 kb on + strand, within Psest_0502 at 556.972 kb on + strand, within Psest_0502 at 556.973 kb on - strand, within Psest_0502 at 556.973 kb on - strand, within Psest_0502 at 556.973 kb on - strand, within Psest_0502 at 556.974 kb on + strand, within Psest_0502 at 556.974 kb on + strand, within Psest_0502 at 556.974 kb on + strand, within Psest_0502 at 556.974 kb on + strand, within Psest_0502 at 556.974 kb on + strand, within Psest_0502 at 556.975 kb on - strand, within Psest_0502 at 556.975 kb on - strand, within Psest_0502 at 556.975 kb on - strand, within Psest_0502 at 557.193 kb on + strand, within Psest_0502 at 557.193 kb on + strand, within Psest_0502 at 557.193 kb on + strand, within Psest_0502 at 557.193 kb on + strand, within Psest_0502 at 557.193 kb on + strand, within Psest_0502 at 557.193 kb on + strand, within Psest_0502 at 557.193 kb on + strand, within Psest_0502 at 557.194 kb on - strand, within Psest_0502 at 557.194 kb on - strand, within Psest_0502 at 557.194 kb on - strand, within Psest_0502 at 557.194 kb on - strand, within Psest_0502 at 557.194 kb on - strand, within Psest_0502 at 557.194 kb on - strand, within Psest_0502 at 557.235 kb on + strand, within Psest_0502 at 557.262 kb on + strand, within Psest_0502 at 557.263 kb on - strand, within Psest_0502 at 557.553 kb on + strand, within Psest_0502 at 557.553 kb on + strand, within Psest_0502 at 557.554 kb on - strand, within Psest_0502 at 557.577 kb on + strand, within Psest_0502 at 557.577 kb on + strand, within Psest_0502 at 557.577 kb on + strand, within Psest_0502 at 557.578 kb on - strand, within Psest_0502 at 557.578 kb on - strand, within Psest_0502 at 557.578 kb on - strand, within Psest_0502 at 557.604 kb on + strand, within Psest_0502 at 557.605 kb on - strand, within Psest_0502 at 557.671 kb on - strand, within Psest_0502 at 557.689 kb on - strand, within Psest_0502 at 557.809 kb on - strand, within Psest_0502 at 557.809 kb on - strand, within Psest_0502 at 557.811 kb on + strand, within Psest_0502 at 557.811 kb on + strand, within Psest_0502 at 557.811 kb on + strand, within Psest_0502 at 557.811 kb on + strand, within Psest_0502 at 557.811 kb on + strand, within Psest_0502 at 557.811 kb on + strand, within Psest_0502 at 557.811 kb on + strand, within Psest_0502 at 557.811 kb on + strand, within Psest_0502 at 557.811 kb on + strand, within Psest_0502 at 557.812 kb on - strand, within Psest_0502 at 557.812 kb on - strand, within Psest_0502 at 557.812 kb on - strand, within Psest_0502 at 557.812 kb on - strand, within Psest_0502 at 557.812 kb on - strand, within Psest_0502 at 557.812 kb on - strand, within Psest_0502 at 558.012 kb on + strand at 558.013 kb on - strand at 558.092 kb on + strand at 558.092 kb on + strand at 558.092 kb on + strand at 558.093 kb on - strand at 558.196 kb on + strand, within Psest_0503 at 558.268 kb on - strand, within Psest_0503 at 558.480 kb on - strand at 558.480 kb on - strand at 558.480 kb on - strand at 558.480 kb on - strand at 558.535 kb on + strand at 558.535 kb on + strand at 558.536 kb on - strand at 558.536 kb on - strand at 558.536 kb on - strand at 558.562 kb on - strand at 558.617 kb on - strand at 558.617 kb on - strand at 558.617 kb on - strand at 558.711 kb on + strand at 558.711 kb on + strand at 558.711 kb on + strand at 558.711 kb on + strand at 558.711 kb on + strand at 558.711 kb on + strand at 558.711 kb on + strand at 558.711 kb on + strand at 558.711 kb on + strand at 558.711 kb on + strand at 558.712 kb on - strand at 558.712 kb on - strand at 558.712 kb on - strand at 558.712 kb on - strand at 558.712 kb on - strand at 558.712 kb on - strand at 558.712 kb on - strand at 558.920 kb on - strand, within Psest_0504 at 558.964 kb on + strand, within Psest_0504 at 558.964 kb on + strand, within Psest_0504 at 558.965 kb on - strand, within Psest_0504 at 558.965 kb on - strand, within Psest_0504 at 558.966 kb on + strand, within Psest_0504 at 558.966 kb on + strand, within Psest_0504 at 558.966 kb on + strand, within Psest_0504 at 558.967 kb on - strand, within Psest_0504
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 555,541 + +0.1 555,541 + +0.8 555,541 + -1.1 555,541 + +0.5 555,541 + +2.1 555,541 + +0.9 555,541 + +2.9 555,541 + +0.7 555,541 + +1.6 555,542 - +0.9 555,542 - +0.3 555,542 - -1.3 555,542 - +0.8 555,542 - +0.8 555,542 - +0.7 555,542 - +0.6 555,560 + +0.7 555,560 + +1.1 555,560 + -0.3 555,560 + +0.6 555,561 - +1.5 555,561 - +1.9 555,561 - +0.1 555,758 + Psest_0501 0.17 -0.8 555,758 + Psest_0501 0.17 +1.9 555,759 - Psest_0501 0.18 +1.6 555,914 + Psest_0501 0.42 +0.1 555,914 + Psest_0501 0.42 -2.2 556,283 + -0.0 556,283 + +0.3 556,283 + +0.6 556,283 + +0.8 556,283 + +0.6 556,283 + +0.8 556,283 + +1.2 556,283 + -0.6 556,283 + +0.3 556,284 - -0.9 556,284 - +1.1 556,284 - -0.9 556,284 - +0.9 556,284 - -0.4 556,284 - +1.6 556,284 - +0.2 556,284 - +2.1 556,284 - -0.8 556,284 - -0.0 556,284 - +1.1 556,284 - -0.9 556,284 - +1.2 556,284 - -0.1 556,284 - +0.4 556,284 - -0.4 556,284 - +1.1 556,284 - +0.2 556,284 - +1.4 556,284 - -0.0 556,284 - +0.1 556,284 - +0.7 556,284 - -0.8 556,284 - +1.5 556,284 - +0.7 556,284 - +0.5 556,284 - -0.8 556,393 - -0.5 556,393 - -1.5 556,500 + Psest_0502 0.12 +0.6 556,500 + Psest_0502 0.12 +1.7 556,501 - Psest_0502 0.12 +0.2 556,501 - Psest_0502 0.12 -1.2 556,501 - Psest_0502 0.12 -0.9 556,501 - Psest_0502 0.12 +1.8 556,608 + Psest_0502 0.18 +3.2 556,625 + Psest_0502 0.19 +0.6 556,626 - Psest_0502 0.19 +0.7 556,626 - Psest_0502 0.19 +0.9 556,626 - Psest_0502 0.19 +0.3 556,716 - Psest_0502 0.24 -0.4 556,752 + Psest_0502 0.27 +0.5 556,753 - Psest_0502 0.27 -0.5 556,905 - Psest_0502 0.36 -0.0 556,917 + Psest_0502 0.36 +0.3 556,972 + Psest_0502 0.40 +0.5 556,972 + Psest_0502 0.40 +0.7 556,972 + Psest_0502 0.40 +0.9 556,972 + Psest_0502 0.40 +0.5 556,972 + Psest_0502 0.40 +1.1 556,972 + Psest_0502 0.40 +0.4 556,972 + Psest_0502 0.40 +0.6 556,973 - Psest_0502 0.40 -1.5 556,973 - Psest_0502 0.40 -1.0 556,973 - Psest_0502 0.40 -0.4 556,974 + Psest_0502 0.40 +0.3 556,974 + Psest_0502 0.40 +1.8 556,974 + Psest_0502 0.40 +0.6 556,974 + Psest_0502 0.40 +0.4 556,974 + Psest_0502 0.40 +0.2 556,975 - Psest_0502 0.40 -0.7 556,975 - Psest_0502 0.40 -2.4 556,975 - Psest_0502 0.40 +0.3 557,193 + Psest_0502 0.53 +1.4 557,193 + Psest_0502 0.53 +1.0 557,193 + Psest_0502 0.53 -2.0 557,193 + Psest_0502 0.53 +0.3 557,193 + Psest_0502 0.53 +0.2 557,193 + Psest_0502 0.53 -0.4 557,193 + Psest_0502 0.53 +1.5 557,194 - Psest_0502 0.53 -2.6 557,194 - Psest_0502 0.53 -0.3 557,194 - Psest_0502 0.53 -0.1 557,194 - Psest_0502 0.53 -1.0 557,194 - Psest_0502 0.53 +1.3 557,194 - Psest_0502 0.53 +0.1 557,235 + Psest_0502 0.55 +1.9 557,262 + Psest_0502 0.57 +0.1 557,263 - Psest_0502 0.57 -0.6 557,553 + Psest_0502 0.74 -0.3 557,553 + Psest_0502 0.74 +0.7 557,554 - Psest_0502 0.74 +1.6 557,577 + Psest_0502 0.76 -0.3 557,577 + Psest_0502 0.76 +1.7 557,577 + Psest_0502 0.76 -0.5 557,578 - Psest_0502 0.76 +0.6 557,578 - Psest_0502 0.76 +1.4 557,578 - Psest_0502 0.76 -3.2 557,604 + Psest_0502 0.77 -0.6 557,605 - Psest_0502 0.78 -0.1 557,671 - Psest_0502 0.81 -0.5 557,689 - Psest_0502 0.83 -1.0 557,809 - Psest_0502 0.90 -1.9 557,809 - Psest_0502 0.90 -1.4 557,811 + Psest_0502 0.90 +0.3 557,811 + Psest_0502 0.90 +1.3 557,811 + Psest_0502 0.90 +0.2 557,811 + Psest_0502 0.90 -1.1 557,811 + Psest_0502 0.90 +1.6 557,811 + Psest_0502 0.90 +0.3 557,811 + Psest_0502 0.90 +1.1 557,811 + Psest_0502 0.90 +1.0 557,811 + Psest_0502 0.90 +0.6 557,812 - Psest_0502 0.90 +0.3 557,812 - Psest_0502 0.90 -0.2 557,812 - Psest_0502 0.90 -0.5 557,812 - Psest_0502 0.90 +0.2 557,812 - Psest_0502 0.90 +0.3 557,812 - Psest_0502 0.90 -0.9 558,012 + +0.7 558,013 - +0.3 558,092 + +0.3 558,092 + -0.4 558,092 + -0.3 558,093 - -0.8 558,196 + Psest_0503 0.30 +0.4 558,268 - Psest_0503 0.46 +1.5 558,480 - +0.4 558,480 - +1.4 558,480 - +1.0 558,480 - +1.3 558,535 + +0.5 558,535 + +0.7 558,536 - +0.9 558,536 - +0.5 558,536 - -0.4 558,562 - -1.7 558,617 - +0.3 558,617 - +0.1 558,617 - +0.0 558,711 + +1.0 558,711 + +1.0 558,711 + +0.2 558,711 + +1.5 558,711 + +0.9 558,711 + +1.5 558,711 + +1.8 558,711 + +0.1 558,711 + +1.1 558,711 + -0.2 558,712 - -0.6 558,712 - -0.0 558,712 - +1.3 558,712 - -0.2 558,712 - -0.9 558,712 - +0.5 558,712 - +0.5 558,920 - Psest_0504 0.50 +0.9 558,964 + Psest_0504 0.62 -0.3 558,964 + Psest_0504 0.62 -0.1 558,965 - Psest_0504 0.62 -0.8 558,965 - Psest_0504 0.62 -1.9 558,966 + Psest_0504 0.63 -0.4 558,966 + Psest_0504 0.63 +0.1 558,966 + Psest_0504 0.63 +0.9 558,967 - Psest_0504 0.63 +0.5
Or see this region's nucleotide sequence