Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0048 and Psest_0049 are separated by 186 nucleotides Psest_0049 and Psest_0050 are separated by 155 nucleotides Psest_0050 and Psest_0051 are separated by 193 nucleotides Psest_0051 and Psest_0052 are separated by 10 nucleotides
Psest_0048: Psest_0048 - ABC-type multidrug transport system, ATPase and permease components, at 50,929 to 52,764
_0048
Psest_0049: Psest_0049 - Uncharacterized conserved protein, at 52,951 to 53,556
_0049
Psest_0050: Psest_0050 - Predicted acetyltransferase, at 53,712 to 53,993
_0050
Psest_0051: Psest_0051 - hypothetical protein, at 54,187 to 54,516
_0051
Psest_0052: Psest_0052 - hypothetical protein, at 54,527 to 55,279
_0052
Position (kb) 52
53
54 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 52.350 kb on + strand, within Psest_0048 at 52.714 kb on + strand at 52.714 kb on + strand at 52.715 kb on - strand at 52.715 kb on - strand at 52.814 kb on - strand at 52.814 kb on - strand at 52.814 kb on - strand at 52.814 kb on - strand at 52.814 kb on - strand at 52.866 kb on + strand at 52.866 kb on + strand at 52.866 kb on + strand at 52.867 kb on - strand at 52.867 kb on - strand at 52.979 kb on + strand at 52.980 kb on - strand at 52.980 kb on - strand at 53.031 kb on + strand, within Psest_0049 at 53.031 kb on + strand, within Psest_0049 at 53.031 kb on + strand, within Psest_0049 at 53.031 kb on + strand, within Psest_0049 at 53.031 kb on + strand, within Psest_0049 at 53.032 kb on - strand, within Psest_0049 at 53.032 kb on - strand, within Psest_0049 at 53.032 kb on - strand, within Psest_0049 at 53.032 kb on - strand, within Psest_0049 at 53.032 kb on - strand, within Psest_0049 at 53.032 kb on - strand, within Psest_0049 at 53.032 kb on - strand, within Psest_0049 at 53.032 kb on - strand, within Psest_0049 at 53.032 kb on - strand, within Psest_0049 at 53.032 kb on - strand, within Psest_0049 at 53.032 kb on - strand, within Psest_0049 at 53.032 kb on - strand, within Psest_0049 at 53.032 kb on - strand, within Psest_0049 at 53.032 kb on - strand, within Psest_0049 at 53.054 kb on + strand, within Psest_0049 at 53.054 kb on + strand, within Psest_0049 at 53.055 kb on - strand, within Psest_0049 at 53.055 kb on - strand, within Psest_0049 at 53.055 kb on - strand, within Psest_0049 at 53.055 kb on - strand, within Psest_0049 at 53.055 kb on - strand, within Psest_0049 at 53.055 kb on - strand, within Psest_0049 at 53.108 kb on + strand, within Psest_0049 at 53.108 kb on + strand, within Psest_0049 at 53.109 kb on - strand, within Psest_0049 at 53.109 kb on - strand, within Psest_0049 at 53.109 kb on - strand, within Psest_0049 at 53.109 kb on - strand, within Psest_0049 at 53.113 kb on - strand, within Psest_0049 at 53.113 kb on - strand, within Psest_0049 at 53.113 kb on - strand, within Psest_0049 at 53.113 kb on - strand, within Psest_0049 at 53.131 kb on + strand, within Psest_0049 at 53.131 kb on + strand, within Psest_0049 at 53.131 kb on + strand, within Psest_0049 at 53.132 kb on - strand, within Psest_0049 at 53.147 kb on + strand, within Psest_0049 at 53.147 kb on + strand, within Psest_0049 at 53.147 kb on + strand, within Psest_0049 at 53.147 kb on + strand, within Psest_0049 at 53.147 kb on + strand, within Psest_0049 at 53.147 kb on + strand, within Psest_0049 at 53.147 kb on + strand, within Psest_0049 at 53.147 kb on + strand, within Psest_0049 at 53.147 kb on + strand, within Psest_0049 at 53.147 kb on + strand, within Psest_0049 at 53.147 kb on + strand, within Psest_0049 at 53.147 kb on + strand, within Psest_0049 at 53.147 kb on + strand, within Psest_0049 at 53.147 kb on + strand, within Psest_0049 at 53.147 kb on + strand, within Psest_0049 at 53.147 kb on + strand, within Psest_0049 at 53.148 kb on - strand, within Psest_0049 at 53.148 kb on - strand, within Psest_0049 at 53.148 kb on - strand, within Psest_0049 at 53.148 kb on - strand, within Psest_0049 at 53.148 kb on - strand, within Psest_0049 at 53.148 kb on - strand, within Psest_0049 at 53.148 kb on - strand, within Psest_0049 at 53.148 kb on - strand, within Psest_0049 at 53.148 kb on - strand, within Psest_0049 at 53.148 kb on - strand, within Psest_0049 at 53.148 kb on - strand, within Psest_0049 at 53.148 kb on - strand, within Psest_0049 at 53.149 kb on + strand, within Psest_0049 at 53.149 kb on + strand, within Psest_0049 at 53.149 kb on + strand, within Psest_0049 at 53.149 kb on + strand, within Psest_0049 at 53.149 kb on + strand, within Psest_0049 at 53.149 kb on + strand, within Psest_0049 at 53.149 kb on + strand, within Psest_0049 at 53.149 kb on + strand, within Psest_0049 at 53.149 kb on + strand, within Psest_0049 at 53.149 kb on + strand, within Psest_0049 at 53.149 kb on + strand, within Psest_0049 at 53.149 kb on + strand, within Psest_0049 at 53.149 kb on + strand, within Psest_0049 at 53.149 kb on + strand, within Psest_0049 at 53.149 kb on + strand, within Psest_0049 at 53.150 kb on - strand, within Psest_0049 at 53.150 kb on - strand, within Psest_0049 at 53.150 kb on - strand, within Psest_0049 at 53.150 kb on - strand, within Psest_0049 at 53.150 kb on - strand, within Psest_0049 at 53.211 kb on + strand, within Psest_0049 at 53.211 kb on + strand, within Psest_0049 at 53.211 kb on + strand, within Psest_0049 at 53.211 kb on + strand, within Psest_0049 at 53.211 kb on + strand, within Psest_0049 at 53.212 kb on - strand, within Psest_0049 at 53.212 kb on - strand, within Psest_0049 at 53.212 kb on - strand, within Psest_0049 at 53.212 kb on - strand, within Psest_0049 at 53.212 kb on - strand, within Psest_0049 at 53.212 kb on - strand, within Psest_0049 at 53.212 kb on - strand, within Psest_0049 at 53.212 kb on - strand, within Psest_0049 at 53.212 kb on - strand, within Psest_0049 at 53.212 kb on - strand, within Psest_0049 at 53.284 kb on + strand, within Psest_0049 at 53.284 kb on + strand, within Psest_0049 at 53.284 kb on + strand, within Psest_0049 at 53.284 kb on + strand, within Psest_0049 at 53.284 kb on + strand, within Psest_0049 at 53.284 kb on + strand, within Psest_0049 at 53.284 kb on + strand, within Psest_0049 at 53.284 kb on + strand, within Psest_0049 at 53.284 kb on + strand, within Psest_0049 at 53.284 kb on + strand, within Psest_0049 at 53.285 kb on - strand, within Psest_0049 at 53.285 kb on - strand, within Psest_0049 at 53.285 kb on - strand, within Psest_0049 at 53.285 kb on - strand, within Psest_0049 at 53.285 kb on - strand, within Psest_0049 at 53.285 kb on - strand, within Psest_0049 at 53.285 kb on - strand, within Psest_0049 at 53.285 kb on - strand, within Psest_0049 at 53.285 kb on - strand, within Psest_0049 at 53.285 kb on - strand, within Psest_0049 at 53.285 kb on - strand, within Psest_0049 at 53.285 kb on - strand, within Psest_0049 at 53.285 kb on - strand, within Psest_0049 at 53.286 kb on + strand, within Psest_0049 at 53.286 kb on + strand, within Psest_0049 at 53.286 kb on + strand, within Psest_0049 at 53.287 kb on - strand, within Psest_0049 at 53.287 kb on - strand, within Psest_0049 at 53.287 kb on - strand, within Psest_0049 at 53.287 kb on - strand, within Psest_0049 at 53.287 kb on - strand, within Psest_0049 at 53.361 kb on + strand, within Psest_0049 at 53.362 kb on - strand, within Psest_0049 at 53.362 kb on - strand, within Psest_0049 at 53.596 kb on - strand at 53.659 kb on + strand at 53.659 kb on + strand at 53.659 kb on + strand at 53.660 kb on - strand at 53.660 kb on - strand at 53.676 kb on + strand at 53.676 kb on + strand at 53.676 kb on + strand at 53.677 kb on - strand at 53.761 kb on - strand, within Psest_0050 at 53.946 kb on + strand, within Psest_0050 at 53.946 kb on + strand, within Psest_0050 at 53.946 kb on + strand, within Psest_0050 at 53.946 kb on + strand, within Psest_0050 at 53.946 kb on + strand, within Psest_0050 at 53.947 kb on - strand, within Psest_0050 at 53.947 kb on - strand, within Psest_0050 at 53.947 kb on - strand, within Psest_0050 at 53.947 kb on - strand, within Psest_0050 at 53.947 kb on - strand, within Psest_0050 at 53.999 kb on - strand at 54.019 kb on + strand at 54.019 kb on + strand at 54.019 kb on + strand at 54.019 kb on + strand at 54.019 kb on + strand at 54.019 kb on + strand at 54.020 kb on - strand at 54.040 kb on + strand at 54.041 kb on - strand at 54.134 kb on - strand at 54.218 kb on + strand at 54.219 kb on - strand at 54.276 kb on + strand, within Psest_0051 at 54.276 kb on + strand, within Psest_0051 at 54.277 kb on - strand, within Psest_0051 at 54.277 kb on - strand, within Psest_0051 at 54.277 kb on - strand, within Psest_0051 at 54.277 kb on - strand, within Psest_0051 at 54.433 kb on + strand, within Psest_0051 at 54.433 kb on + strand, within Psest_0051 at 54.433 kb on + strand, within Psest_0051 at 54.433 kb on + strand, within Psest_0051 at 54.434 kb on - strand, within Psest_0051 at 54.434 kb on - strand, within Psest_0051 at 54.434 kb on - strand, within Psest_0051 at 54.488 kb on + strand at 54.488 kb on + strand at 54.488 kb on + strand at 54.488 kb on + strand at 54.488 kb on + strand at 54.489 kb on - strand at 54.489 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 52,350 + Psest_0048 0.77 +2.4 52,714 + +0.5 52,714 + -0.0 52,715 - +0.8 52,715 - -0.3 52,814 - -1.2 52,814 - -2.5 52,814 - +0.5 52,814 - -0.7 52,814 - -0.6 52,866 + -0.5 52,866 + +0.0 52,866 + -0.0 52,867 - -1.1 52,867 - +0.1 52,979 + -0.3 52,980 - +2.2 52,980 - +0.1 53,031 + Psest_0049 0.13 -0.2 53,031 + Psest_0049 0.13 -0.6 53,031 + Psest_0049 0.13 -1.2 53,031 + Psest_0049 0.13 +2.0 53,031 + Psest_0049 0.13 -0.7 53,032 - Psest_0049 0.13 +1.4 53,032 - Psest_0049 0.13 +2.3 53,032 - Psest_0049 0.13 +0.7 53,032 - Psest_0049 0.13 +1.8 53,032 - Psest_0049 0.13 +2.1 53,032 - Psest_0049 0.13 +1.1 53,032 - Psest_0049 0.13 +1.0 53,032 - Psest_0049 0.13 +0.9 53,032 - Psest_0049 0.13 -0.8 53,032 - Psest_0049 0.13 +1.4 53,032 - Psest_0049 0.13 +1.2 53,032 - Psest_0049 0.13 -0.2 53,032 - Psest_0049 0.13 +0.7 53,032 - Psest_0049 0.13 +0.6 53,054 + Psest_0049 0.17 +0.7 53,054 + Psest_0049 0.17 -1.8 53,055 - Psest_0049 0.17 -0.7 53,055 - Psest_0049 0.17 +0.6 53,055 - Psest_0049 0.17 +0.8 53,055 - Psest_0049 0.17 +2.1 53,055 - Psest_0049 0.17 +0.4 53,055 - Psest_0049 0.17 -0.5 53,108 + Psest_0049 0.26 -2.3 53,108 + Psest_0049 0.26 -1.1 53,109 - Psest_0049 0.26 +2.6 53,109 - Psest_0049 0.26 +0.9 53,109 - Psest_0049 0.26 +0.8 53,109 - Psest_0049 0.26 +1.6 53,113 - Psest_0049 0.27 +1.8 53,113 - Psest_0049 0.27 -0.3 53,113 - Psest_0049 0.27 +1.0 53,113 - Psest_0049 0.27 +1.3 53,131 + Psest_0049 0.30 +1.2 53,131 + Psest_0049 0.30 +0.4 53,131 + Psest_0049 0.30 -1.6 53,132 - Psest_0049 0.30 -1.0 53,147 + Psest_0049 0.32 +1.2 53,147 + Psest_0049 0.32 +1.5 53,147 + Psest_0049 0.32 -0.6 53,147 + Psest_0049 0.32 -1.3 53,147 + Psest_0049 0.32 -0.5 53,147 + Psest_0049 0.32 +0.3 53,147 + Psest_0049 0.32 -0.3 53,147 + Psest_0049 0.32 +1.5 53,147 + Psest_0049 0.32 -0.1 53,147 + Psest_0049 0.32 +1.0 53,147 + Psest_0049 0.32 +0.1 53,147 + Psest_0049 0.32 -0.5 53,147 + Psest_0049 0.32 -0.6 53,147 + Psest_0049 0.32 -0.1 53,147 + Psest_0049 0.32 +0.2 53,147 + Psest_0049 0.32 -0.2 53,148 - Psest_0049 0.33 +0.2 53,148 - Psest_0049 0.33 -0.0 53,148 - Psest_0049 0.33 +0.0 53,148 - Psest_0049 0.33 +0.9 53,148 - Psest_0049 0.33 -1.7 53,148 - Psest_0049 0.33 -0.0 53,148 - Psest_0049 0.33 -0.1 53,148 - Psest_0049 0.33 +0.6 53,148 - Psest_0049 0.33 +0.6 53,148 - Psest_0049 0.33 -0.1 53,148 - Psest_0049 0.33 +0.4 53,148 - Psest_0049 0.33 +0.4 53,149 + Psest_0049 0.33 -0.0 53,149 + Psest_0049 0.33 +0.2 53,149 + Psest_0049 0.33 +0.1 53,149 + Psest_0049 0.33 +0.4 53,149 + Psest_0049 0.33 -1.0 53,149 + Psest_0049 0.33 +0.1 53,149 + Psest_0049 0.33 +1.5 53,149 + Psest_0049 0.33 -0.2 53,149 + Psest_0049 0.33 -0.7 53,149 + Psest_0049 0.33 +0.7 53,149 + Psest_0049 0.33 -2.1 53,149 + Psest_0049 0.33 -0.3 53,149 + Psest_0049 0.33 +0.6 53,149 + Psest_0049 0.33 -0.0 53,149 + Psest_0049 0.33 -0.4 53,150 - Psest_0049 0.33 +0.6 53,150 - Psest_0049 0.33 +1.1 53,150 - Psest_0049 0.33 +0.2 53,150 - Psest_0049 0.33 -2.8 53,150 - Psest_0049 0.33 -2.7 53,211 + Psest_0049 0.43 -0.6 53,211 + Psest_0049 0.43 -1.7 53,211 + Psest_0049 0.43 +0.4 53,211 + Psest_0049 0.43 -0.8 53,211 + Psest_0049 0.43 -0.1 53,212 - Psest_0049 0.43 -2.2 53,212 - Psest_0049 0.43 -0.9 53,212 - Psest_0049 0.43 -0.9 53,212 - Psest_0049 0.43 +1.7 53,212 - Psest_0049 0.43 -0.6 53,212 - Psest_0049 0.43 +0.1 53,212 - Psest_0049 0.43 +0.7 53,212 - Psest_0049 0.43 -0.0 53,212 - Psest_0049 0.43 +0.3 53,212 - Psest_0049 0.43 +0.6 53,284 + Psest_0049 0.55 -0.6 53,284 + Psest_0049 0.55 +0.3 53,284 + Psest_0049 0.55 -0.7 53,284 + Psest_0049 0.55 -0.4 53,284 + Psest_0049 0.55 -0.3 53,284 + Psest_0049 0.55 +0.9 53,284 + Psest_0049 0.55 +0.0 53,284 + Psest_0049 0.55 +1.2 53,284 + Psest_0049 0.55 -0.6 53,284 + Psest_0049 0.55 +0.7 53,285 - Psest_0049 0.55 -1.7 53,285 - Psest_0049 0.55 -1.4 53,285 - Psest_0049 0.55 -0.5 53,285 - Psest_0049 0.55 -1.2 53,285 - Psest_0049 0.55 -0.6 53,285 - Psest_0049 0.55 -0.0 53,285 - Psest_0049 0.55 -2.1 53,285 - Psest_0049 0.55 +0.1 53,285 - Psest_0049 0.55 -1.7 53,285 - Psest_0049 0.55 -0.6 53,285 - Psest_0049 0.55 -1.0 53,285 - Psest_0049 0.55 -1.6 53,285 - Psest_0049 0.55 -2.2 53,286 + Psest_0049 0.55 -0.8 53,286 + Psest_0049 0.55 -1.0 53,286 + Psest_0049 0.55 -0.5 53,287 - Psest_0049 0.55 -0.9 53,287 - Psest_0049 0.55 -0.1 53,287 - Psest_0049 0.55 -2.8 53,287 - Psest_0049 0.55 -1.7 53,287 - Psest_0049 0.55 +1.2 53,361 + Psest_0049 0.68 +0.6 53,362 - Psest_0049 0.68 -0.2 53,362 - Psest_0049 0.68 +0.0 53,596 - +1.0 53,659 + +0.3 53,659 + -0.7 53,659 + +0.9 53,660 - -0.4 53,660 - +1.5 53,676 + +0.4 53,676 + +1.0 53,676 + -0.7 53,677 - +1.8 53,761 - Psest_0050 0.17 +0.9 53,946 + Psest_0050 0.83 +1.3 53,946 + Psest_0050 0.83 +1.2 53,946 + Psest_0050 0.83 -0.5 53,946 + Psest_0050 0.83 +0.4 53,946 + Psest_0050 0.83 +0.9 53,947 - Psest_0050 0.83 +0.0 53,947 - Psest_0050 0.83 +0.4 53,947 - Psest_0050 0.83 +0.6 53,947 - Psest_0050 0.83 -1.1 53,947 - Psest_0050 0.83 +1.0 53,999 - -0.6 54,019 + +1.2 54,019 + +0.2 54,019 + +0.8 54,019 + +0.4 54,019 + +0.5 54,019 + -0.2 54,020 - +0.2 54,040 + +0.4 54,041 - +1.0 54,134 - -0.0 54,218 + -1.8 54,219 - -0.5 54,276 + Psest_0051 0.27 -1.7 54,276 + Psest_0051 0.27 -0.2 54,277 - Psest_0051 0.27 -1.5 54,277 - Psest_0051 0.27 +0.5 54,277 - Psest_0051 0.27 +0.2 54,277 - Psest_0051 0.27 +0.0 54,433 + Psest_0051 0.75 -0.2 54,433 + Psest_0051 0.75 -0.0 54,433 + Psest_0051 0.75 +0.7 54,433 + Psest_0051 0.75 +0.8 54,434 - Psest_0051 0.75 +1.5 54,434 - Psest_0051 0.75 -0.5 54,434 - Psest_0051 0.75 -2.6 54,488 + -1.0 54,488 + +0.2 54,488 + -0.6 54,488 + +0.3 54,488 + +0.8 54,489 - -0.9 54,489 - +0.2
Or see this region's nucleotide sequence