Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0490

Experiment: Def Carbenicillin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0489 and Psest_0490 are separated by 108 nucleotidesPsest_0490 and Psest_0491 are separated by 139 nucleotides Psest_0489: Psest_0489 - phosphoserine phosphatase SerB, at 540,964 to 542,178 _0489 Psest_0490: Psest_0490 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 542,287 to 543,360 _0490 Psest_0491: Psest_0491 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 543,500 to 545,566 _0491 Position (kb) 542 543 544Strain fitness (log2 ratio) -2 -1 0 1 2at 541.327 kb on + strand, within Psest_0489at 541.348 kb on - strand, within Psest_0489at 541.545 kb on - strand, within Psest_0489at 541.766 kb on + strand, within Psest_0489at 541.767 kb on - strand, within Psest_0489at 541.767 kb on - strand, within Psest_0489at 541.767 kb on - strand, within Psest_0489at 541.828 kb on + strand, within Psest_0489at 541.868 kb on - strand, within Psest_0489at 542.012 kb on + strand, within Psest_0489at 542.140 kb on + strandat 542.176 kb on + strandat 542.176 kb on + strandat 542.176 kb on + strandat 542.252 kb on + strandat 542.252 kb on + strandat 542.252 kb on + strandat 542.252 kb on + strandat 542.252 kb on + strandat 542.252 kb on + strandat 542.252 kb on + strandat 542.252 kb on + strandat 542.253 kb on - strandat 542.253 kb on - strandat 542.253 kb on - strandat 542.369 kb on + strandat 542.369 kb on + strandat 542.369 kb on + strandat 542.370 kb on - strandat 542.373 kb on + strandat 542.373 kb on + strandat 542.373 kb on + strandat 542.373 kb on + strandat 542.373 kb on + strandat 542.373 kb on + strandat 542.373 kb on + strandat 542.373 kb on + strandat 542.373 kb on + strandat 542.373 kb on + strandat 542.373 kb on + strandat 542.374 kb on - strandat 542.374 kb on - strandat 542.374 kb on - strandat 542.374 kb on - strandat 542.374 kb on - strandat 542.374 kb on - strandat 542.374 kb on - strandat 542.374 kb on - strandat 542.374 kb on - strandat 542.437 kb on - strand, within Psest_0490at 542.531 kb on + strand, within Psest_0490at 542.665 kb on + strand, within Psest_0490at 542.665 kb on + strand, within Psest_0490at 542.665 kb on + strand, within Psest_0490at 542.666 kb on - strand, within Psest_0490at 542.666 kb on - strand, within Psest_0490at 542.666 kb on - strand, within Psest_0490at 542.666 kb on - strand, within Psest_0490at 542.666 kb on - strand, within Psest_0490at 542.666 kb on - strand, within Psest_0490at 542.966 kb on + strand, within Psest_0490at 542.966 kb on + strand, within Psest_0490at 542.967 kb on - strand, within Psest_0490at 542.967 kb on - strand, within Psest_0490at 542.967 kb on - strand, within Psest_0490at 542.967 kb on - strand, within Psest_0490at 542.967 kb on - strand, within Psest_0490at 543.077 kb on + strand, within Psest_0490at 543.077 kb on + strand, within Psest_0490at 543.078 kb on - strand, within Psest_0490at 543.331 kb on + strandat 543.400 kb on + strandat 543.401 kb on - strandat 543.501 kb on + strandat 543.501 kb on + strandat 543.502 kb on - strandat 543.502 kb on - strandat 543.502 kb on - strandat 543.556 kb on - strandat 543.570 kb on + strandat 543.570 kb on + strandat 543.570 kb on + strandat 543.570 kb on + strandat 543.571 kb on - strandat 543.571 kb on - strandat 543.571 kb on - strandat 543.571 kb on - strandat 543.571 kb on - strandat 543.571 kb on - strandat 543.714 kb on + strand, within Psest_0491at 543.714 kb on + strand, within Psest_0491at 543.760 kb on + strand, within Psest_0491at 544.293 kb on + strand, within Psest_0491at 544.293 kb on + strand, within Psest_0491at 544.293 kb on + strand, within Psest_0491at 544.293 kb on + strand, within Psest_0491at 544.294 kb on - strand, within Psest_0491at 544.294 kb on - strand, within Psest_0491at 544.294 kb on - strand, within Psest_0491at 544.294 kb on - strand, within Psest_0491

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml
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541,327 + Psest_0489 0.30 -0.1
541,348 - Psest_0489 0.32 +1.0
541,545 - Psest_0489 0.48 +1.4
541,766 + Psest_0489 0.66 +1.6
541,767 - Psest_0489 0.66 -0.3
541,767 - Psest_0489 0.66 -1.0
541,767 - Psest_0489 0.66 -0.3
541,828 + Psest_0489 0.71 +0.4
541,868 - Psest_0489 0.74 +0.2
542,012 + Psest_0489 0.86 -0.4
542,140 + +1.4
542,176 + +1.2
542,176 + +1.4
542,176 + +0.7
542,252 + +0.4
542,252 + +2.2
542,252 + -0.5
542,252 + -0.6
542,252 + +1.3
542,252 + +0.6
542,252 + -0.1
542,252 + -1.2
542,253 - +0.5
542,253 - +1.7
542,253 - +2.1
542,369 + -0.5
542,369 + -0.0
542,369 + +0.6
542,370 - +0.2
542,373 + +0.1
542,373 + +0.8
542,373 + -1.1
542,373 + +1.4
542,373 + +0.9
542,373 + +0.8
542,373 + +0.2
542,373 + -1.0
542,373 + +0.2
542,373 + +0.5
542,373 + -0.2
542,374 - -0.3
542,374 - +0.2
542,374 - +0.4
542,374 - +0.7
542,374 - +0.8
542,374 - +0.9
542,374 - +0.9
542,374 - -0.4
542,374 - +0.0
542,437 - Psest_0490 0.14 +1.3
542,531 + Psest_0490 0.23 +0.4
542,665 + Psest_0490 0.35 -0.4
542,665 + Psest_0490 0.35 +0.4
542,665 + Psest_0490 0.35 +0.1
542,666 - Psest_0490 0.35 +1.7
542,666 - Psest_0490 0.35 +1.0
542,666 - Psest_0490 0.35 +1.3
542,666 - Psest_0490 0.35 +0.7
542,666 - Psest_0490 0.35 -1.1
542,666 - Psest_0490 0.35 +1.5
542,966 + Psest_0490 0.63 +0.7
542,966 + Psest_0490 0.63 -0.4
542,967 - Psest_0490 0.63 +1.0
542,967 - Psest_0490 0.63 +0.5
542,967 - Psest_0490 0.63 +0.9
542,967 - Psest_0490 0.63 +0.8
542,967 - Psest_0490 0.63 -0.8
543,077 + Psest_0490 0.74 +0.7
543,077 + Psest_0490 0.74 -1.3
543,078 - Psest_0490 0.74 +0.7
543,331 + -0.6
543,400 + +0.3
543,401 - +0.1
543,501 + +0.3
543,501 + +0.5
543,502 - +0.7
543,502 - +0.3
543,502 - +1.3
543,556 - -0.7
543,570 + +0.1
543,570 + +1.4
543,570 + -0.7
543,570 + -1.3
543,571 - -0.7
543,571 - -1.3
543,571 - -2.6
543,571 - -0.9
543,571 - -0.3
543,571 - -1.0
543,714 + Psest_0491 0.10 +0.6
543,714 + Psest_0491 0.10 +0.2
543,760 + Psest_0491 0.13 +2.3
544,293 + Psest_0491 0.38 -1.8
544,293 + Psest_0491 0.38 -0.7
544,293 + Psest_0491 0.38 -0.2
544,293 + Psest_0491 0.38 -1.4
544,294 - Psest_0491 0.38 -1.5
544,294 - Psest_0491 0.38 +0.3
544,294 - Psest_0491 0.38 -1.3
544,294 - Psest_0491 0.38 -0.6

Or see this region's nucleotide sequence