Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0441

Experiment: Def Carbenicillin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0439 and Psest_0440 are separated by 188 nucleotidesPsest_0440 and Psest_0441 are separated by 178 nucleotidesPsest_0441 and Psest_0442 are separated by 25 nucleotides Psest_0439: Psest_0439 - hypothetical protein, at 477,613 to 479,055 _0439 Psest_0440: Psest_0440 - hypothetical protein, at 479,244 to 479,558 _0440 Psest_0441: Psest_0441 - Subtilisin-like serine proteases, at 479,737 to 482,166 _0441 Psest_0442: Psest_0442 - ATPases of the AAA+ class, at 482,192 to 483,178 _0442 Position (kb) 479 480 481 482 483Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 478.917 kb on + strandat 478.918 kb on - strandat 478.918 kb on - strandat 478.969 kb on + strandat 478.969 kb on + strandat 479.043 kb on + strandat 479.043 kb on + strandat 479.044 kb on - strandat 479.044 kb on - strandat 479.044 kb on - strandat 479.053 kb on + strandat 479.053 kb on + strandat 479.053 kb on + strandat 479.053 kb on + strandat 479.053 kb on + strandat 479.053 kb on + strandat 479.053 kb on + strandat 479.053 kb on + strandat 479.053 kb on + strandat 479.053 kb on + strandat 479.053 kb on + strandat 479.054 kb on - strandat 479.054 kb on - strandat 479.054 kb on - strandat 479.054 kb on - strandat 479.058 kb on - strandat 479.086 kb on - strandat 479.147 kb on + strandat 479.147 kb on + strandat 479.147 kb on + strandat 479.162 kb on + strandat 479.162 kb on + strandat 479.163 kb on - strandat 479.163 kb on - strandat 479.192 kb on + strandat 479.192 kb on + strandat 479.193 kb on - strandat 479.224 kb on + strandat 479.224 kb on + strandat 479.225 kb on - strandat 479.225 kb on - strandat 479.258 kb on + strandat 479.259 kb on - strandat 479.437 kb on + strand, within Psest_0440at 479.437 kb on + strand, within Psest_0440at 479.437 kb on + strand, within Psest_0440at 479.437 kb on + strand, within Psest_0440at 479.438 kb on - strand, within Psest_0440at 479.438 kb on - strand, within Psest_0440at 479.556 kb on + strandat 479.556 kb on + strandat 479.556 kb on + strandat 479.557 kb on - strandat 479.557 kb on - strandat 479.557 kb on - strandat 479.557 kb on - strandat 479.557 kb on - strandat 479.603 kb on + strandat 479.603 kb on + strandat 479.604 kb on - strandat 479.658 kb on - strandat 479.690 kb on + strandat 479.691 kb on - strandat 479.691 kb on - strandat 479.691 kb on - strandat 479.711 kb on + strandat 479.712 kb on - strandat 479.712 kb on - strandat 479.712 kb on - strandat 479.731 kb on + strandat 479.860 kb on + strandat 479.860 kb on + strandat 479.860 kb on + strandat 479.860 kb on + strandat 479.860 kb on + strandat 479.861 kb on - strandat 479.861 kb on - strandat 479.879 kb on + strandat 479.880 kb on - strandat 480.082 kb on - strand, within Psest_0441at 480.129 kb on - strand, within Psest_0441at 480.150 kb on - strand, within Psest_0441at 480.150 kb on - strand, within Psest_0441at 480.150 kb on - strand, within Psest_0441at 480.231 kb on - strand, within Psest_0441at 480.301 kb on + strand, within Psest_0441at 480.302 kb on - strand, within Psest_0441at 480.302 kb on - strand, within Psest_0441at 480.302 kb on - strand, within Psest_0441at 480.343 kb on + strand, within Psest_0441at 480.344 kb on - strand, within Psest_0441at 480.394 kb on - strand, within Psest_0441at 480.405 kb on - strand, within Psest_0441at 480.438 kb on + strand, within Psest_0441at 480.439 kb on - strand, within Psest_0441at 480.455 kb on + strand, within Psest_0441at 480.455 kb on + strand, within Psest_0441at 480.455 kb on + strand, within Psest_0441at 480.456 kb on - strand, within Psest_0441at 480.486 kb on + strand, within Psest_0441at 480.486 kb on + strand, within Psest_0441at 480.486 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.543 kb on - strand, within Psest_0441at 480.543 kb on - strand, within Psest_0441at 480.543 kb on - strand, within Psest_0441at 480.543 kb on - strand, within Psest_0441at 480.543 kb on - strand, within Psest_0441at 480.612 kb on + strand, within Psest_0441at 480.612 kb on + strand, within Psest_0441at 480.612 kb on + strand, within Psest_0441at 480.612 kb on + strand, within Psest_0441at 480.612 kb on + strand, within Psest_0441at 480.612 kb on + strand, within Psest_0441at 480.612 kb on + strand, within Psest_0441at 480.612 kb on + strand, within Psest_0441at 480.612 kb on + strand, within Psest_0441at 480.612 kb on + strand, within Psest_0441at 480.612 kb on + strand, within Psest_0441at 480.612 kb on + strand, within Psest_0441at 480.612 kb on + strand, within Psest_0441at 480.612 kb on + strand, within Psest_0441at 480.613 kb on - strand, within Psest_0441at 480.613 kb on - strand, within Psest_0441at 480.613 kb on - strand, within Psest_0441at 480.613 kb on - strand, within Psest_0441at 480.616 kb on + strand, within Psest_0441at 480.616 kb on + strand, within Psest_0441at 480.616 kb on + strand, within Psest_0441at 480.616 kb on + strand, within Psest_0441at 480.616 kb on + strand, within Psest_0441at 480.617 kb on - strand, within Psest_0441at 480.794 kb on + strand, within Psest_0441at 480.900 kb on - strand, within Psest_0441at 480.990 kb on + strand, within Psest_0441at 480.991 kb on - strand, within Psest_0441at 481.019 kb on + strand, within Psest_0441at 481.020 kb on - strand, within Psest_0441at 481.020 kb on - strand, within Psest_0441at 481.059 kb on + strand, within Psest_0441at 481.059 kb on + strand, within Psest_0441at 481.059 kb on + strand, within Psest_0441at 481.059 kb on + strand, within Psest_0441at 481.059 kb on + strand, within Psest_0441at 481.060 kb on - strand, within Psest_0441at 481.060 kb on - strand, within Psest_0441at 481.060 kb on - strand, within Psest_0441at 481.109 kb on + strand, within Psest_0441at 481.110 kb on - strand, within Psest_0441at 481.110 kb on - strand, within Psest_0441at 481.110 kb on - strand, within Psest_0441at 481.154 kb on + strand, within Psest_0441at 481.154 kb on + strand, within Psest_0441at 481.155 kb on - strand, within Psest_0441at 481.155 kb on - strand, within Psest_0441at 481.249 kb on + strand, within Psest_0441at 481.250 kb on - strand, within Psest_0441at 481.250 kb on - strand, within Psest_0441at 481.250 kb on - strand, within Psest_0441at 481.259 kb on + strand, within Psest_0441at 481.259 kb on + strand, within Psest_0441at 481.284 kb on + strand, within Psest_0441at 481.284 kb on + strand, within Psest_0441at 481.284 kb on + strand, within Psest_0441at 481.285 kb on - strand, within Psest_0441at 481.285 kb on - strand, within Psest_0441at 481.285 kb on - strand, within Psest_0441at 481.426 kb on + strand, within Psest_0441at 481.427 kb on - strand, within Psest_0441at 481.427 kb on - strand, within Psest_0441at 481.427 kb on - strand, within Psest_0441at 481.438 kb on + strand, within Psest_0441at 481.528 kb on + strand, within Psest_0441at 481.529 kb on - strand, within Psest_0441at 481.529 kb on - strand, within Psest_0441at 481.529 kb on - strand, within Psest_0441at 481.529 kb on - strand, within Psest_0441at 481.529 kb on - strand, within Psest_0441at 481.563 kb on - strand, within Psest_0441at 481.602 kb on + strand, within Psest_0441at 481.602 kb on + strand, within Psest_0441at 481.602 kb on + strand, within Psest_0441at 481.602 kb on + strand, within Psest_0441at 481.603 kb on - strand, within Psest_0441at 481.603 kb on - strand, within Psest_0441at 481.603 kb on - strand, within Psest_0441at 481.645 kb on + strand, within Psest_0441at 481.669 kb on + strand, within Psest_0441at 481.670 kb on - strand, within Psest_0441at 481.670 kb on - strand, within Psest_0441at 481.673 kb on + strand, within Psest_0441at 481.673 kb on + strand, within Psest_0441at 481.673 kb on + strand, within Psest_0441at 481.673 kb on + strand, within Psest_0441at 481.673 kb on + strand, within Psest_0441at 481.673 kb on + strand, within Psest_0441at 481.673 kb on + strand, within Psest_0441at 481.674 kb on - strand, within Psest_0441at 481.674 kb on - strand, within Psest_0441at 481.674 kb on - strand, within Psest_0441at 481.674 kb on - strand, within Psest_0441at 481.674 kb on - strand, within Psest_0441at 481.684 kb on + strand, within Psest_0441at 481.684 kb on + strand, within Psest_0441at 481.684 kb on + strand, within Psest_0441at 481.805 kb on + strand, within Psest_0441at 481.805 kb on + strand, within Psest_0441at 481.805 kb on + strand, within Psest_0441at 481.805 kb on + strand, within Psest_0441at 481.806 kb on - strand, within Psest_0441at 481.806 kb on - strand, within Psest_0441at 481.806 kb on - strand, within Psest_0441at 481.806 kb on - strand, within Psest_0441at 481.806 kb on - strand, within Psest_0441at 481.825 kb on - strand, within Psest_0441at 481.982 kb on + strandat 481.992 kb on + strandat 481.993 kb on - strandat 481.993 kb on - strandat 482.034 kb on + strandat 482.034 kb on + strandat 482.034 kb on + strandat 482.042 kb on + strandat 482.042 kb on + strandat 482.157 kb on - strandat 482.291 kb on + strand, within Psest_0442at 482.291 kb on + strand, within Psest_0442at 482.293 kb on + strand, within Psest_0442at 482.552 kb on + strand, within Psest_0442at 482.552 kb on + strand, within Psest_0442at 482.753 kb on + strand, within Psest_0442at 482.753 kb on + strand, within Psest_0442at 482.821 kb on + strand, within Psest_0442at 482.864 kb on + strand, within Psest_0442at 482.873 kb on + strand, within Psest_0442at 482.923 kb on + strand, within Psest_0442at 482.923 kb on + strand, within Psest_0442at 482.923 kb on + strand, within Psest_0442at 482.923 kb on + strand, within Psest_0442at 482.933 kb on + strand, within Psest_0442at 482.933 kb on + strand, within Psest_0442at 482.933 kb on + strand, within Psest_0442at 482.933 kb on + strand, within Psest_0442at 482.933 kb on + strand, within Psest_0442at 482.979 kb on + strand, within Psest_0442at 482.979 kb on + strand, within Psest_0442at 482.998 kb on + strand, within Psest_0442at 482.998 kb on + strand, within Psest_0442at 483.001 kb on + strand, within Psest_0442at 483.001 kb on + strand, within Psest_0442at 483.091 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml
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478,917 + -1.4
478,918 - -0.6
478,918 - -1.2
478,969 + +1.8
478,969 + -0.3
479,043 + -1.1
479,043 + -0.8
479,044 - -2.0
479,044 - +0.4
479,044 - -1.9
479,053 + -1.0
479,053 + -0.9
479,053 + -0.8
479,053 + +0.9
479,053 + -1.5
479,053 + -0.3
479,053 + +0.2
479,053 + -0.5
479,053 + -0.6
479,053 + -1.1
479,053 + -1.1
479,054 - -1.5
479,054 - -0.6
479,054 - -0.8
479,054 - -1.8
479,058 - -0.9
479,086 - -1.7
479,147 + +0.6
479,147 + -0.6
479,147 + -1.7
479,162 + -1.2
479,162 + -1.3
479,163 - -1.4
479,163 - -2.8
479,192 + -2.1
479,192 + -1.4
479,193 - -0.8
479,224 + -2.0
479,224 + -1.1
479,225 - -0.8
479,225 - -2.9
479,258 + -0.3
479,259 - +0.5
479,437 + Psest_0440 0.61 -1.5
479,437 + Psest_0440 0.61 -1.2
479,437 + Psest_0440 0.61 -1.4
479,437 + Psest_0440 0.61 -0.5
479,438 - Psest_0440 0.62 -1.6
479,438 - Psest_0440 0.62 -1.2
479,556 + -0.5
479,556 + -2.0
479,556 + -0.6
479,557 - -1.2
479,557 - -1.8
479,557 - -1.4
479,557 - -0.6
479,557 - -1.2
479,603 + -0.6
479,603 + -0.5
479,604 - +1.6
479,658 - -0.6
479,690 + +0.1
479,691 - -2.4
479,691 - -1.8
479,691 - +0.9
479,711 + -2.2
479,712 - -0.3
479,712 - -1.1
479,712 - -0.1
479,731 + -0.6
479,860 + -2.0
479,860 + -2.8
479,860 + -3.8
479,860 + -2.7
479,860 + -0.6
479,861 - -2.1
479,861 - -2.2
479,879 + -1.5
479,880 - +1.2
480,082 - Psest_0441 0.14 -1.6
480,129 - Psest_0441 0.16 -1.1
480,150 - Psest_0441 0.17 +0.2
480,150 - Psest_0441 0.17 +0.2
480,150 - Psest_0441 0.17 -0.5
480,231 - Psest_0441 0.20 -0.6
480,301 + Psest_0441 0.23 -2.1
480,302 - Psest_0441 0.23 +1.2
480,302 - Psest_0441 0.23 -0.0
480,302 - Psest_0441 0.23 -0.1
480,343 + Psest_0441 0.25 -0.8
480,344 - Psest_0441 0.25 +1.3
480,394 - Psest_0441 0.27 -0.2
480,405 - Psest_0441 0.27 -0.7
480,438 + Psest_0441 0.29 -0.7
480,439 - Psest_0441 0.29 -0.5
480,455 + Psest_0441 0.30 -1.0
480,455 + Psest_0441 0.30 -1.6
480,455 + Psest_0441 0.30 -0.9
480,456 - Psest_0441 0.30 -0.8
480,486 + Psest_0441 0.31 -1.2
480,486 + Psest_0441 0.31 -1.7
480,486 + Psest_0441 0.31 -1.0
480,542 + Psest_0441 0.33 -0.5
480,542 + Psest_0441 0.33 -1.3
480,542 + Psest_0441 0.33 -0.6
480,542 + Psest_0441 0.33 -1.9
480,542 + Psest_0441 0.33 -0.4
480,542 + Psest_0441 0.33 -0.3
480,542 + Psest_0441 0.33 +0.2
480,542 + Psest_0441 0.33 -3.1
480,542 + Psest_0441 0.33 -0.4
480,542 + Psest_0441 0.33 -1.2
480,542 + Psest_0441 0.33 -3.8
480,542 + Psest_0441 0.33 +0.2
480,542 + Psest_0441 0.33 -0.8
480,542 + Psest_0441 0.33 -0.3
480,542 + Psest_0441 0.33 -0.9
480,542 + Psest_0441 0.33 -0.1
480,542 + Psest_0441 0.33 -0.4
480,542 + Psest_0441 0.33 -0.1
480,542 + Psest_0441 0.33 -1.1
480,542 + Psest_0441 0.33 +0.1
480,542 + Psest_0441 0.33 +0.7
480,542 + Psest_0441 0.33 +0.1
480,542 + Psest_0441 0.33 -2.0
480,543 - Psest_0441 0.33 -1.2
480,543 - Psest_0441 0.33 +0.5
480,543 - Psest_0441 0.33 -0.4
480,543 - Psest_0441 0.33 -2.8
480,543 - Psest_0441 0.33 -0.6
480,612 + Psest_0441 0.36 +0.1
480,612 + Psest_0441 0.36 +0.6
480,612 + Psest_0441 0.36 +0.2
480,612 + Psest_0441 0.36 -1.4
480,612 + Psest_0441 0.36 -0.9
480,612 + Psest_0441 0.36 -1.9
480,612 + Psest_0441 0.36 +0.7
480,612 + Psest_0441 0.36 -1.0
480,612 + Psest_0441 0.36 +0.3
480,612 + Psest_0441 0.36 -0.1
480,612 + Psest_0441 0.36 -0.6
480,612 + Psest_0441 0.36 -0.7
480,612 + Psest_0441 0.36 -1.1
480,612 + Psest_0441 0.36 +0.3
480,613 - Psest_0441 0.36 -1.2
480,613 - Psest_0441 0.36 -1.8
480,613 - Psest_0441 0.36 +0.0
480,613 - Psest_0441 0.36 -1.8
480,616 + Psest_0441 0.36 +0.2
480,616 + Psest_0441 0.36 +0.4
480,616 + Psest_0441 0.36 -0.3
480,616 + Psest_0441 0.36 -0.3
480,616 + Psest_0441 0.36 -0.8
480,617 - Psest_0441 0.36 -0.3
480,794 + Psest_0441 0.43 -1.2
480,900 - Psest_0441 0.48 -1.7
480,990 + Psest_0441 0.52 -1.2
480,991 - Psest_0441 0.52 -0.4
481,019 + Psest_0441 0.53 -0.2
481,020 - Psest_0441 0.53 -0.2
481,020 - Psest_0441 0.53 +0.4
481,059 + Psest_0441 0.54 -0.4
481,059 + Psest_0441 0.54 -1.8
481,059 + Psest_0441 0.54 -1.1
481,059 + Psest_0441 0.54 -0.1
481,059 + Psest_0441 0.54 -2.2
481,060 - Psest_0441 0.54 -0.3
481,060 - Psest_0441 0.54 -1.6
481,060 - Psest_0441 0.54 -1.3
481,109 + Psest_0441 0.56 -0.8
481,110 - Psest_0441 0.57 -1.3
481,110 - Psest_0441 0.57 +0.4
481,110 - Psest_0441 0.57 -1.9
481,154 + Psest_0441 0.58 -2.4
481,154 + Psest_0441 0.58 -1.0
481,155 - Psest_0441 0.58 -2.4
481,155 - Psest_0441 0.58 -0.4
481,249 + Psest_0441 0.62 -1.9
481,250 - Psest_0441 0.62 +0.1
481,250 - Psest_0441 0.62 -0.4
481,250 - Psest_0441 0.62 -0.9
481,259 + Psest_0441 0.63 +0.6
481,259 + Psest_0441 0.63 -0.2
481,284 + Psest_0441 0.64 -0.4
481,284 + Psest_0441 0.64 +1.3
481,284 + Psest_0441 0.64 -1.2
481,285 - Psest_0441 0.64 -0.1
481,285 - Psest_0441 0.64 +1.4
481,285 - Psest_0441 0.64 -0.9
481,426 + Psest_0441 0.70 -1.0
481,427 - Psest_0441 0.70 -0.4
481,427 - Psest_0441 0.70 -0.4
481,427 - Psest_0441 0.70 +1.6
481,438 + Psest_0441 0.70 +0.1
481,528 + Psest_0441 0.74 -1.2
481,529 - Psest_0441 0.74 -0.8
481,529 - Psest_0441 0.74 -0.2
481,529 - Psest_0441 0.74 +0.9
481,529 - Psest_0441 0.74 -0.7
481,529 - Psest_0441 0.74 -0.4
481,563 - Psest_0441 0.75 -0.8
481,602 + Psest_0441 0.77 +0.2
481,602 + Psest_0441 0.77 -0.7
481,602 + Psest_0441 0.77 -1.4
481,602 + Psest_0441 0.77 -2.2
481,603 - Psest_0441 0.77 -0.4
481,603 - Psest_0441 0.77 -1.8
481,603 - Psest_0441 0.77 -0.6
481,645 + Psest_0441 0.79 -2.2
481,669 + Psest_0441 0.80 -1.5
481,670 - Psest_0441 0.80 -1.5
481,670 - Psest_0441 0.80 -0.4
481,673 + Psest_0441 0.80 -0.8
481,673 + Psest_0441 0.80 -1.4
481,673 + Psest_0441 0.80 -2.5
481,673 + Psest_0441 0.80 -1.7
481,673 + Psest_0441 0.80 -0.2
481,673 + Psest_0441 0.80 -0.8
481,673 + Psest_0441 0.80 -2.8
481,674 - Psest_0441 0.80 -0.9
481,674 - Psest_0441 0.80 -2.3
481,674 - Psest_0441 0.80 -1.0
481,674 - Psest_0441 0.80 -1.2
481,674 - Psest_0441 0.80 -2.1
481,684 + Psest_0441 0.80 -0.5
481,684 + Psest_0441 0.80 +0.9
481,684 + Psest_0441 0.80 -1.4
481,805 + Psest_0441 0.85 -0.5
481,805 + Psest_0441 0.85 -1.1
481,805 + Psest_0441 0.85 +0.1
481,805 + Psest_0441 0.85 -1.7
481,806 - Psest_0441 0.85 -1.9
481,806 - Psest_0441 0.85 -1.0
481,806 - Psest_0441 0.85 -0.9
481,806 - Psest_0441 0.85 -0.7
481,806 - Psest_0441 0.85 +0.7
481,825 - Psest_0441 0.86 -0.2
481,982 + -1.4
481,992 + +0.8
481,993 - -2.4
481,993 - -0.9
482,034 + -1.4
482,034 + -0.2
482,034 + -0.3
482,042 + -1.6
482,042 + -1.5
482,157 - -2.2
482,291 + Psest_0442 0.10 +0.1
482,291 + Psest_0442 0.10 +1.0
482,293 + Psest_0442 0.10 -0.2
482,552 + Psest_0442 0.36 -0.8
482,552 + Psest_0442 0.36 -0.4
482,753 + Psest_0442 0.57 +0.7
482,753 + Psest_0442 0.57 -2.7
482,821 + Psest_0442 0.64 +0.6
482,864 + Psest_0442 0.68 +1.0
482,873 + Psest_0442 0.69 -0.8
482,923 + Psest_0442 0.74 +0.7
482,923 + Psest_0442 0.74 +1.2
482,923 + Psest_0442 0.74 -0.6
482,923 + Psest_0442 0.74 -1.6
482,933 + Psest_0442 0.75 +1.0
482,933 + Psest_0442 0.75 -1.9
482,933 + Psest_0442 0.75 -0.8
482,933 + Psest_0442 0.75 +0.0
482,933 + Psest_0442 0.75 +0.4
482,979 + Psest_0442 0.80 +0.2
482,979 + Psest_0442 0.80 +0.6
482,998 + Psest_0442 0.82 +2.7
482,998 + Psest_0442 0.82 +0.2
483,001 + Psest_0442 0.82 -1.0
483,001 + Psest_0442 0.82 -1.0
483,091 + -0.4

Or see this region's nucleotide sequence