Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4365 and Psest_4366 are separated by 354 nucleotides Psest_4366 and Psest_4367 overlap by 4 nucleotides Psest_4367 and Psest_4368 are separated by 2 nucleotides Psest_4368 and Psest_4369 overlap by 4 nucleotides
Psest_4365: Psest_4365 - glucose-inhibited division protein A, at 4,563,110 to 4,565,002
_4365
Psest_4366: Psest_4366 - Multisubunit Na+/H+ antiporter, MnhG subunit, at 4,565,357 to 4,565,824
_4366
Psest_4367: Psest_4367 - Multisubunit Na+/H+ antiporter, MnhF subunit, at 4,565,821 to 4,566,081
_4367
Psest_4368: Psest_4368 - Multisubunit Na+/H+ antiporter, MnhE subunit, at 4,566,084 to 4,566,425
_4368
Psest_4369: Psest_4369 - Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit, at 4,566,422 to 4,567,942
_4369
Position (kb)
4565
4566 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4565.050 kb on - strand at 4565.050 kb on - strand at 4565.050 kb on - strand at 4565.050 kb on - strand at 4565.050 kb on - strand at 4565.052 kb on - strand at 4565.059 kb on - strand at 4565.059 kb on - strand at 4565.059 kb on - strand at 4565.121 kb on + strand at 4565.127 kb on + strand at 4565.139 kb on + strand at 4565.140 kb on - strand at 4565.155 kb on - strand at 4565.165 kb on + strand at 4565.166 kb on - strand at 4565.169 kb on + strand at 4565.278 kb on + strand at 4565.279 kb on - strand at 4565.279 kb on - strand at 4565.279 kb on - strand at 4565.279 kb on - strand at 4565.302 kb on + strand at 4565.316 kb on - strand at 4565.354 kb on + strand at 4565.355 kb on - strand at 4565.358 kb on + strand at 4565.358 kb on + strand at 4565.358 kb on + strand at 4565.358 kb on + strand at 4565.373 kb on - strand at 4565.373 kb on - strand at 4565.402 kb on + strand at 4565.402 kb on + strand at 4565.403 kb on - strand at 4565.403 kb on - strand at 4565.403 kb on - strand at 4565.403 kb on - strand at 4565.403 kb on - strand at 4565.403 kb on - strand at 4565.476 kb on - strand, within Psest_4366 at 4565.476 kb on - strand, within Psest_4366 at 4565.476 kb on - strand, within Psest_4366 at 4565.476 kb on - strand, within Psest_4366 at 4565.562 kb on + strand, within Psest_4366 at 4565.562 kb on + strand, within Psest_4366 at 4565.562 kb on + strand, within Psest_4366 at 4565.562 kb on + strand, within Psest_4366 at 4565.563 kb on - strand, within Psest_4366 at 4565.563 kb on - strand, within Psest_4366 at 4565.563 kb on - strand, within Psest_4366 at 4565.563 kb on - strand, within Psest_4366 at 4565.563 kb on - strand, within Psest_4366 at 4565.702 kb on - strand, within Psest_4366 at 4566.178 kb on + strand, within Psest_4368 at 4566.178 kb on + strand, within Psest_4368 at 4566.178 kb on + strand, within Psest_4368 at 4566.179 kb on - strand, within Psest_4368 at 4566.367 kb on + strand, within Psest_4368 at 4566.368 kb on - strand, within Psest_4368 at 4566.368 kb on - strand, within Psest_4368 at 4566.373 kb on + strand, within Psest_4368 at 4566.373 kb on + strand, within Psest_4368 at 4566.373 kb on + strand, within Psest_4368 at 4566.373 kb on + strand, within Psest_4368 at 4566.373 kb on + strand, within Psest_4368 at 4566.373 kb on + strand, within Psest_4368 at 4566.373 kb on + strand, within Psest_4368 at 4566.373 kb on + strand, within Psest_4368 at 4566.373 kb on + strand, within Psest_4368 at 4566.373 kb on + strand, within Psest_4368 at 4566.373 kb on + strand, within Psest_4368 at 4566.373 kb on + strand, within Psest_4368 at 4566.373 kb on + strand, within Psest_4368 at 4566.373 kb on + strand, within Psest_4368 at 4566.373 kb on + strand, within Psest_4368 at 4566.374 kb on - strand, within Psest_4368 at 4566.374 kb on - strand, within Psest_4368 at 4566.374 kb on - strand, within Psest_4368 at 4566.374 kb on - strand, within Psest_4368 at 4566.374 kb on - strand, within Psest_4368 at 4566.374 kb on - strand, within Psest_4368 at 4566.471 kb on + strand at 4566.472 kb on - strand at 4566.472 kb on - strand at 4566.472 kb on - strand at 4566.472 kb on - strand at 4566.669 kb on + strand, within Psest_4369
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 4,565,050 - -2.4 4,565,050 - -1.3 4,565,050 - -1.6 4,565,050 - -2.1 4,565,050 - -0.9 4,565,052 - -2.6 4,565,059 - -1.3 4,565,059 - -2.3 4,565,059 - -0.5 4,565,121 + -1.8 4,565,127 + -1.7 4,565,139 + -0.8 4,565,140 - -4.1 4,565,155 - -1.6 4,565,165 + +0.8 4,565,166 - -2.2 4,565,169 + +0.0 4,565,278 + -1.6 4,565,279 - -0.5 4,565,279 - -2.2 4,565,279 - -1.6 4,565,279 - -1.9 4,565,302 + -1.0 4,565,316 - -3.6 4,565,354 + -0.7 4,565,355 - +0.6 4,565,358 + +1.1 4,565,358 + -0.2 4,565,358 + -0.3 4,565,358 + +0.4 4,565,373 - -2.3 4,565,373 - -1.5 4,565,402 + -0.6 4,565,402 + -1.1 4,565,403 - -1.8 4,565,403 - -3.8 4,565,403 - +0.2 4,565,403 - -2.8 4,565,403 - -3.7 4,565,403 - +0.3 4,565,476 - Psest_4366 0.25 -2.0 4,565,476 - Psest_4366 0.25 -1.9 4,565,476 - Psest_4366 0.25 -2.2 4,565,476 - Psest_4366 0.25 -1.2 4,565,562 + Psest_4366 0.44 -2.0 4,565,562 + Psest_4366 0.44 -1.3 4,565,562 + Psest_4366 0.44 -2.1 4,565,562 + Psest_4366 0.44 -1.4 4,565,563 - Psest_4366 0.44 -2.7 4,565,563 - Psest_4366 0.44 -0.8 4,565,563 - Psest_4366 0.44 -1.1 4,565,563 - Psest_4366 0.44 -1.2 4,565,563 - Psest_4366 0.44 -0.2 4,565,702 - Psest_4366 0.74 -1.5 4,566,178 + Psest_4368 0.27 -1.4 4,566,178 + Psest_4368 0.27 -2.5 4,566,178 + Psest_4368 0.27 -0.2 4,566,179 - Psest_4368 0.28 +0.5 4,566,367 + Psest_4368 0.83 -0.1 4,566,368 - Psest_4368 0.83 -0.6 4,566,368 - Psest_4368 0.83 +0.1 4,566,373 + Psest_4368 0.85 +0.9 4,566,373 + Psest_4368 0.85 +0.9 4,566,373 + Psest_4368 0.85 +0.1 4,566,373 + Psest_4368 0.85 -0.0 4,566,373 + Psest_4368 0.85 +0.1 4,566,373 + Psest_4368 0.85 +0.6 4,566,373 + Psest_4368 0.85 +0.8 4,566,373 + Psest_4368 0.85 -0.2 4,566,373 + Psest_4368 0.85 -0.6 4,566,373 + Psest_4368 0.85 -0.1 4,566,373 + Psest_4368 0.85 -0.3 4,566,373 + Psest_4368 0.85 +0.8 4,566,373 + Psest_4368 0.85 +0.1 4,566,373 + Psest_4368 0.85 -0.3 4,566,373 + Psest_4368 0.85 +0.1 4,566,374 - Psest_4368 0.85 -0.7 4,566,374 - Psest_4368 0.85 +0.0 4,566,374 - Psest_4368 0.85 +0.7 4,566,374 - Psest_4368 0.85 +1.8 4,566,374 - Psest_4368 0.85 -0.6 4,566,374 - Psest_4368 0.85 +0.6 4,566,471 + -0.7 4,566,472 - -0.2 4,566,472 - -0.8 4,566,472 - +0.1 4,566,472 - -1.3 4,566,669 + Psest_4369 0.16 -1.5
Or see this region's nucleotide sequence