Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4366

Experiment: Def Carbenicillin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4365 and Psest_4366 are separated by 354 nucleotidesPsest_4366 and Psest_4367 overlap by 4 nucleotidesPsest_4367 and Psest_4368 are separated by 2 nucleotidesPsest_4368 and Psest_4369 overlap by 4 nucleotides Psest_4365: Psest_4365 - glucose-inhibited division protein A, at 4,563,110 to 4,565,002 _4365 Psest_4366: Psest_4366 - Multisubunit Na+/H+ antiporter, MnhG subunit, at 4,565,357 to 4,565,824 _4366 Psest_4367: Psest_4367 - Multisubunit Na+/H+ antiporter, MnhF subunit, at 4,565,821 to 4,566,081 _4367 Psest_4368: Psest_4368 - Multisubunit Na+/H+ antiporter, MnhE subunit, at 4,566,084 to 4,566,425 _4368 Psest_4369: Psest_4369 - Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit, at 4,566,422 to 4,567,942 _4369 Position (kb) 4565 4566Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4565.050 kb on - strandat 4565.050 kb on - strandat 4565.050 kb on - strandat 4565.050 kb on - strandat 4565.050 kb on - strandat 4565.052 kb on - strandat 4565.059 kb on - strandat 4565.059 kb on - strandat 4565.059 kb on - strandat 4565.121 kb on + strandat 4565.127 kb on + strandat 4565.139 kb on + strandat 4565.140 kb on - strandat 4565.155 kb on - strandat 4565.165 kb on + strandat 4565.166 kb on - strandat 4565.169 kb on + strandat 4565.278 kb on + strandat 4565.279 kb on - strandat 4565.279 kb on - strandat 4565.279 kb on - strandat 4565.279 kb on - strandat 4565.302 kb on + strandat 4565.316 kb on - strandat 4565.354 kb on + strandat 4565.355 kb on - strandat 4565.358 kb on + strandat 4565.358 kb on + strandat 4565.358 kb on + strandat 4565.358 kb on + strandat 4565.373 kb on - strandat 4565.373 kb on - strandat 4565.402 kb on + strandat 4565.402 kb on + strandat 4565.403 kb on - strandat 4565.403 kb on - strandat 4565.403 kb on - strandat 4565.403 kb on - strandat 4565.403 kb on - strandat 4565.403 kb on - strandat 4565.476 kb on - strand, within Psest_4366at 4565.476 kb on - strand, within Psest_4366at 4565.476 kb on - strand, within Psest_4366at 4565.476 kb on - strand, within Psest_4366at 4565.562 kb on + strand, within Psest_4366at 4565.562 kb on + strand, within Psest_4366at 4565.562 kb on + strand, within Psest_4366at 4565.562 kb on + strand, within Psest_4366at 4565.563 kb on - strand, within Psest_4366at 4565.563 kb on - strand, within Psest_4366at 4565.563 kb on - strand, within Psest_4366at 4565.563 kb on - strand, within Psest_4366at 4565.563 kb on - strand, within Psest_4366at 4565.702 kb on - strand, within Psest_4366at 4566.178 kb on + strand, within Psest_4368at 4566.178 kb on + strand, within Psest_4368at 4566.178 kb on + strand, within Psest_4368at 4566.179 kb on - strand, within Psest_4368at 4566.367 kb on + strand, within Psest_4368at 4566.368 kb on - strand, within Psest_4368at 4566.368 kb on - strand, within Psest_4368at 4566.373 kb on + strand, within Psest_4368at 4566.373 kb on + strand, within Psest_4368at 4566.373 kb on + strand, within Psest_4368at 4566.373 kb on + strand, within Psest_4368at 4566.373 kb on + strand, within Psest_4368at 4566.373 kb on + strand, within Psest_4368at 4566.373 kb on + strand, within Psest_4368at 4566.373 kb on + strand, within Psest_4368at 4566.373 kb on + strand, within Psest_4368at 4566.373 kb on + strand, within Psest_4368at 4566.373 kb on + strand, within Psest_4368at 4566.373 kb on + strand, within Psest_4368at 4566.373 kb on + strand, within Psest_4368at 4566.373 kb on + strand, within Psest_4368at 4566.373 kb on + strand, within Psest_4368at 4566.374 kb on - strand, within Psest_4368at 4566.374 kb on - strand, within Psest_4368at 4566.374 kb on - strand, within Psest_4368at 4566.374 kb on - strand, within Psest_4368at 4566.374 kb on - strand, within Psest_4368at 4566.374 kb on - strand, within Psest_4368at 4566.471 kb on + strandat 4566.472 kb on - strandat 4566.472 kb on - strandat 4566.472 kb on - strandat 4566.472 kb on - strandat 4566.669 kb on + strand, within Psest_4369

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml
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4,565,050 - -2.4
4,565,050 - -1.3
4,565,050 - -1.6
4,565,050 - -2.1
4,565,050 - -0.9
4,565,052 - -2.6
4,565,059 - -1.3
4,565,059 - -2.3
4,565,059 - -0.5
4,565,121 + -1.8
4,565,127 + -1.7
4,565,139 + -0.8
4,565,140 - -4.1
4,565,155 - -1.6
4,565,165 + +0.8
4,565,166 - -2.2
4,565,169 + +0.0
4,565,278 + -1.6
4,565,279 - -0.5
4,565,279 - -2.2
4,565,279 - -1.6
4,565,279 - -1.9
4,565,302 + -1.0
4,565,316 - -3.6
4,565,354 + -0.7
4,565,355 - +0.6
4,565,358 + +1.1
4,565,358 + -0.2
4,565,358 + -0.3
4,565,358 + +0.4
4,565,373 - -2.3
4,565,373 - -1.5
4,565,402 + -0.6
4,565,402 + -1.1
4,565,403 - -1.8
4,565,403 - -3.8
4,565,403 - +0.2
4,565,403 - -2.8
4,565,403 - -3.7
4,565,403 - +0.3
4,565,476 - Psest_4366 0.25 -2.0
4,565,476 - Psest_4366 0.25 -1.9
4,565,476 - Psest_4366 0.25 -2.2
4,565,476 - Psest_4366 0.25 -1.2
4,565,562 + Psest_4366 0.44 -2.0
4,565,562 + Psest_4366 0.44 -1.3
4,565,562 + Psest_4366 0.44 -2.1
4,565,562 + Psest_4366 0.44 -1.4
4,565,563 - Psest_4366 0.44 -2.7
4,565,563 - Psest_4366 0.44 -0.8
4,565,563 - Psest_4366 0.44 -1.1
4,565,563 - Psest_4366 0.44 -1.2
4,565,563 - Psest_4366 0.44 -0.2
4,565,702 - Psest_4366 0.74 -1.5
4,566,178 + Psest_4368 0.27 -1.4
4,566,178 + Psest_4368 0.27 -2.5
4,566,178 + Psest_4368 0.27 -0.2
4,566,179 - Psest_4368 0.28 +0.5
4,566,367 + Psest_4368 0.83 -0.1
4,566,368 - Psest_4368 0.83 -0.6
4,566,368 - Psest_4368 0.83 +0.1
4,566,373 + Psest_4368 0.85 +0.9
4,566,373 + Psest_4368 0.85 +0.9
4,566,373 + Psest_4368 0.85 +0.1
4,566,373 + Psest_4368 0.85 -0.0
4,566,373 + Psest_4368 0.85 +0.1
4,566,373 + Psest_4368 0.85 +0.6
4,566,373 + Psest_4368 0.85 +0.8
4,566,373 + Psest_4368 0.85 -0.2
4,566,373 + Psest_4368 0.85 -0.6
4,566,373 + Psest_4368 0.85 -0.1
4,566,373 + Psest_4368 0.85 -0.3
4,566,373 + Psest_4368 0.85 +0.8
4,566,373 + Psest_4368 0.85 +0.1
4,566,373 + Psest_4368 0.85 -0.3
4,566,373 + Psest_4368 0.85 +0.1
4,566,374 - Psest_4368 0.85 -0.7
4,566,374 - Psest_4368 0.85 +0.0
4,566,374 - Psest_4368 0.85 +0.7
4,566,374 - Psest_4368 0.85 +1.8
4,566,374 - Psest_4368 0.85 -0.6
4,566,374 - Psest_4368 0.85 +0.6
4,566,471 + -0.7
4,566,472 - -0.2
4,566,472 - -0.8
4,566,472 - +0.1
4,566,472 - -1.3
4,566,669 + Psest_4369 0.16 -1.5

Or see this region's nucleotide sequence