Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0419 and Psest_0422 are separated by 948 nucleotides Psest_0422 and Psest_0423 overlap by 8 nucleotides
Psest_0419: Psest_0419 - Acyl-CoA dehydrogenase (EC 1.3.8.7) <small>(from data)</small>, at 455,210 to 456,988
_0419
Psest_0422: Psest_0422 - Site-specific recombinase XerD, at 457,937 to 459,058
_0422
Psest_0423: Psest_0423 - hypothetical protein, at 459,051 to 461,111
_0423
Position (kb) 457
458
459
460 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 456.962 kb on + strand at 456.963 kb on - strand at 456.963 kb on - strand at 456.963 kb on - strand at 457.015 kb on - strand at 457.047 kb on - strand at 457.047 kb on - strand at 457.081 kb on + strand at 457.081 kb on + strand at 457.081 kb on + strand at 457.081 kb on + strand at 457.081 kb on + strand at 457.081 kb on + strand at 457.081 kb on + strand at 457.082 kb on - strand at 457.082 kb on - strand at 457.082 kb on - strand at 457.093 kb on + strand at 457.094 kb on - strand at 457.094 kb on - strand at 457.094 kb on - strand at 457.094 kb on - strand at 457.094 kb on - strand at 457.122 kb on + strand at 457.123 kb on - strand at 457.134 kb on + strand at 457.135 kb on - strand at 457.150 kb on + strand at 457.160 kb on + strand at 457.161 kb on - strand at 457.184 kb on - strand at 457.184 kb on - strand at 457.184 kb on - strand at 457.188 kb on + strand at 457.188 kb on + strand at 457.188 kb on + strand at 457.188 kb on + strand at 457.188 kb on + strand at 457.189 kb on - strand at 457.189 kb on - strand at 457.189 kb on - strand at 457.189 kb on - strand at 457.189 kb on - strand at 457.189 kb on - strand at 457.189 kb on - strand at 457.196 kb on - strand at 457.196 kb on - strand at 457.196 kb on - strand at 457.467 kb on + strand at 457.468 kb on - strand at 457.468 kb on - strand at 457.468 kb on - strand at 457.491 kb on + strand at 457.491 kb on + strand at 457.491 kb on + strand at 457.491 kb on + strand at 457.491 kb on + strand at 457.492 kb on - strand at 457.492 kb on - strand at 457.492 kb on - strand at 457.494 kb on + strand at 457.495 kb on - strand at 457.495 kb on - strand at 457.495 kb on - strand at 457.495 kb on - strand at 457.495 kb on - strand at 457.495 kb on - strand at 457.515 kb on - strand at 457.614 kb on + strand at 457.614 kb on + strand at 457.615 kb on - strand at 457.615 kb on - strand at 457.615 kb on - strand at 457.615 kb on - strand at 457.672 kb on - strand at 457.691 kb on - strand at 457.694 kb on + strand at 457.694 kb on + strand at 457.695 kb on - strand at 457.695 kb on - strand at 457.698 kb on + strand at 457.699 kb on - strand at 457.721 kb on - strand at 457.721 kb on - strand at 457.721 kb on - strand at 457.721 kb on - strand at 457.728 kb on - strand at 457.728 kb on - strand at 457.791 kb on + strand at 457.791 kb on + strand at 457.796 kb on - strand at 457.903 kb on + strand at 457.934 kb on + strand at 457.935 kb on - strand at 458.042 kb on - strand at 458.116 kb on + strand, within Psest_0422 at 458.116 kb on + strand, within Psest_0422 at 458.164 kb on - strand, within Psest_0422 at 458.192 kb on + strand, within Psest_0422 at 458.196 kb on + strand, within Psest_0422 at 458.253 kb on + strand, within Psest_0422 at 458.254 kb on - strand, within Psest_0422 at 458.310 kb on + strand, within Psest_0422 at 458.490 kb on + strand, within Psest_0422 at 458.503 kb on + strand, within Psest_0422 at 458.798 kb on - strand, within Psest_0422 at 458.798 kb on - strand, within Psest_0422 at 458.872 kb on + strand, within Psest_0422 at 458.872 kb on + strand, within Psest_0422 at 458.876 kb on + strand, within Psest_0422 at 458.891 kb on + strand, within Psest_0422 at 459.005 kb on + strand at 459.006 kb on - strand at 459.007 kb on + strand at 459.007 kb on + strand at 459.008 kb on - strand at 459.157 kb on - strand at 459.232 kb on - strand at 459.232 kb on - strand at 459.245 kb on + strand at 459.462 kb on + strand, within Psest_0423 at 459.630 kb on - strand, within Psest_0423 at 459.643 kb on + strand, within Psest_0423 at 459.644 kb on - strand, within Psest_0423 at 459.716 kb on + strand, within Psest_0423 at 459.749 kb on + strand, within Psest_0423 at 459.749 kb on + strand, within Psest_0423 at 459.750 kb on - strand, within Psest_0423 at 459.897 kb on + strand, within Psest_0423 at 459.918 kb on - strand, within Psest_0423 at 459.979 kb on + strand, within Psest_0423 at 459.979 kb on + strand, within Psest_0423 at 459.980 kb on - strand, within Psest_0423
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 456,962 + +1.1 456,963 - -0.4 456,963 - +0.4 456,963 - +0.6 457,015 - +0.3 457,047 - +0.1 457,047 - -1.0 457,081 + +0.9 457,081 + +1.7 457,081 + +1.5 457,081 + +3.2 457,081 + +2.0 457,081 + +2.1 457,081 + +1.8 457,082 - -1.5 457,082 - -1.2 457,082 - -0.9 457,093 + +1.9 457,094 - -0.8 457,094 - -0.5 457,094 - -0.8 457,094 - -0.6 457,094 - +0.3 457,122 + +2.6 457,123 - -0.9 457,134 + +2.3 457,135 - -0.6 457,150 + +2.5 457,160 + +2.4 457,161 - -0.2 457,184 - +1.7 457,184 - +0.6 457,184 - +0.5 457,188 + +2.5 457,188 + +2.6 457,188 + +2.8 457,188 + +2.9 457,188 + +2.4 457,189 - +2.2 457,189 - +0.1 457,189 - -0.3 457,189 - -0.0 457,189 - +1.4 457,189 - +0.8 457,189 - +0.5 457,196 - -0.8 457,196 - -0.4 457,196 - -0.2 457,467 + -0.6 457,468 - -0.6 457,468 - -2.1 457,468 - -1.9 457,491 + -0.4 457,491 + -0.1 457,491 + -1.1 457,491 + -0.3 457,491 + -0.3 457,492 - -0.8 457,492 - -1.6 457,492 - -0.5 457,494 + -0.4 457,495 - -0.3 457,495 - -0.9 457,495 - -1.6 457,495 - +0.1 457,495 - -0.8 457,495 - -0.8 457,515 - +2.2 457,614 + +1.5 457,614 + -1.5 457,615 - -1.1 457,615 - -0.6 457,615 - -0.6 457,615 - -0.8 457,672 - -0.1 457,691 - -1.2 457,694 + +0.5 457,694 + +1.2 457,695 - -1.2 457,695 - -0.1 457,698 + +0.1 457,699 - -0.8 457,721 - -0.7 457,721 - -1.9 457,721 - -1.0 457,721 - -1.3 457,728 - -0.3 457,728 - -2.4 457,791 + +0.6 457,791 + -1.5 457,796 - +0.1 457,903 + -0.1 457,934 + -1.3 457,935 - -1.5 458,042 - -0.5 458,116 + Psest_0422 0.16 -1.3 458,116 + Psest_0422 0.16 -0.8 458,164 - Psest_0422 0.20 -1.6 458,192 + Psest_0422 0.23 -0.4 458,196 + Psest_0422 0.23 -1.5 458,253 + Psest_0422 0.28 -1.8 458,254 - Psest_0422 0.28 -0.8 458,310 + Psest_0422 0.33 -1.4 458,490 + Psest_0422 0.49 -0.6 458,503 + Psest_0422 0.50 -0.1 458,798 - Psest_0422 0.77 -1.2 458,798 - Psest_0422 0.77 -0.8 458,872 + Psest_0422 0.83 -0.5 458,872 + Psest_0422 0.83 -0.4 458,876 + Psest_0422 0.84 -2.0 458,891 + Psest_0422 0.85 -1.2 459,005 + -1.3 459,006 - +0.5 459,007 + +1.4 459,007 + -1.1 459,008 - -3.0 459,157 - -1.2 459,232 - -0.8 459,232 - -1.2 459,245 + -1.4 459,462 + Psest_0423 0.20 -2.0 459,630 - Psest_0423 0.28 -0.1 459,643 + Psest_0423 0.29 +0.0 459,644 - Psest_0423 0.29 -2.2 459,716 + Psest_0423 0.32 -1.8 459,749 + Psest_0423 0.34 -2.4 459,749 + Psest_0423 0.34 +0.4 459,750 - Psest_0423 0.34 -3.0 459,897 + Psest_0423 0.41 -0.2 459,918 - Psest_0423 0.42 -1.2 459,979 + Psest_0423 0.45 -0.8 459,979 + Psest_0423 0.45 -0.3 459,980 - Psest_0423 0.45 -1.0
Or see this region's nucleotide sequence