Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4123 and Psest_4124 are separated by 248 nucleotides Psest_4124 and Psest_4125 are separated by 78 nucleotides Psest_4125 and Psest_4126 overlap by 4 nucleotides
Psest_4123: Psest_4123 - Site-specific recombinase XerD, at 4,302,682 to 4,303,740
_4123
Psest_4124: Psest_4124 - hypothetical protein, at 4,303,989 to 4,304,306
_4124
Psest_4125: Psest_4125 - Glycine cleavage system H protein (lipoate-binding), at 4,304,385 to 4,304,849
_4125
Psest_4126: Psest_4126 - Predicted peroxiredoxins, at 4,304,846 to 4,305,220
_4126
Position (kb)
4303
4304
4305 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4302.992 kb on + strand, within Psest_4123 at 4303.021 kb on + strand, within Psest_4123 at 4303.081 kb on + strand, within Psest_4123 at 4303.081 kb on + strand, within Psest_4123 at 4303.082 kb on - strand, within Psest_4123 at 4303.082 kb on - strand, within Psest_4123 at 4303.107 kb on - strand, within Psest_4123 at 4303.223 kb on + strand, within Psest_4123 at 4303.224 kb on - strand, within Psest_4123 at 4303.224 kb on - strand, within Psest_4123 at 4303.397 kb on + strand, within Psest_4123 at 4303.398 kb on - strand, within Psest_4123 at 4303.527 kb on + strand, within Psest_4123 at 4303.527 kb on + strand, within Psest_4123 at 4303.528 kb on - strand, within Psest_4123 at 4303.528 kb on - strand, within Psest_4123 at 4303.528 kb on - strand, within Psest_4123 at 4303.528 kb on - strand, within Psest_4123 at 4303.563 kb on + strand, within Psest_4123 at 4303.883 kb on + strand at 4303.976 kb on + strand at 4303.976 kb on + strand at 4304.134 kb on + strand, within Psest_4124 at 4304.134 kb on + strand, within Psest_4124 at 4304.215 kb on + strand, within Psest_4124 at 4304.216 kb on - strand, within Psest_4124 at 4304.242 kb on + strand, within Psest_4124 at 4304.242 kb on + strand, within Psest_4124 at 4304.366 kb on + strand at 4304.386 kb on + strand at 4304.444 kb on + strand, within Psest_4125 at 4304.444 kb on + strand, within Psest_4125 at 4304.444 kb on + strand, within Psest_4125 at 4304.445 kb on - strand, within Psest_4125 at 4304.445 kb on - strand, within Psest_4125 at 4304.445 kb on - strand, within Psest_4125 at 4304.445 kb on - strand, within Psest_4125 at 4304.715 kb on + strand, within Psest_4125 at 4304.715 kb on + strand, within Psest_4125 at 4304.716 kb on - strand, within Psest_4125 at 4304.716 kb on - strand, within Psest_4125 at 4304.726 kb on - strand, within Psest_4125 at 4304.772 kb on + strand, within Psest_4125 at 4304.772 kb on + strand, within Psest_4125 at 4304.772 kb on + strand, within Psest_4125 at 4304.772 kb on + strand, within Psest_4125 at 4304.772 kb on + strand, within Psest_4125 at 4304.772 kb on + strand, within Psest_4125 at 4304.772 kb on + strand, within Psest_4125 at 4304.772 kb on + strand, within Psest_4125 at 4304.772 kb on + strand, within Psest_4125 at 4304.772 kb on + strand, within Psest_4125 at 4304.772 kb on + strand, within Psest_4125 at 4304.772 kb on + strand, within Psest_4125 at 4304.773 kb on - strand, within Psest_4125 at 4304.773 kb on - strand, within Psest_4125 at 4304.773 kb on - strand, within Psest_4125 at 4304.773 kb on - strand, within Psest_4125 at 4304.773 kb on - strand, within Psest_4125 at 4304.773 kb on - strand, within Psest_4125 at 4304.849 kb on + strand at 4305.101 kb on + strand, within Psest_4126 at 4305.102 kb on - strand, within Psest_4126 at 4305.221 kb on - strand at 4305.221 kb on - strand at 4305.247 kb on + strand at 4305.247 kb on + strand at 4305.247 kb on + strand at 4305.248 kb on - strand at 4305.248 kb on - strand at 4305.257 kb on + strand at 4305.258 kb on - strand at 4305.258 kb on - strand at 4305.258 kb on - strand at 4305.258 kb on - strand at 4305.258 kb on - strand at 4305.258 kb on - strand at 4305.295 kb on + strand at 4305.295 kb on + strand at 4305.295 kb on + strand at 4305.296 kb on - strand at 4305.296 kb on - strand at 4305.306 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 4,302,992 + Psest_4123 0.29 -1.6 4,303,021 + Psest_4123 0.32 -0.3 4,303,081 + Psest_4123 0.38 +1.3 4,303,081 + Psest_4123 0.38 -0.9 4,303,082 - Psest_4123 0.38 -1.9 4,303,082 - Psest_4123 0.38 +1.2 4,303,107 - Psest_4123 0.40 -0.7 4,303,223 + Psest_4123 0.51 +1.6 4,303,224 - Psest_4123 0.51 -0.8 4,303,224 - Psest_4123 0.51 -0.3 4,303,397 + Psest_4123 0.68 -1.2 4,303,398 - Psest_4123 0.68 -0.5 4,303,527 + Psest_4123 0.80 -2.1 4,303,527 + Psest_4123 0.80 -2.1 4,303,528 - Psest_4123 0.80 -1.6 4,303,528 - Psest_4123 0.80 -1.8 4,303,528 - Psest_4123 0.80 -1.0 4,303,528 - Psest_4123 0.80 -1.5 4,303,563 + Psest_4123 0.83 -1.4 4,303,883 + -0.4 4,303,976 + -1.7 4,303,976 + -0.7 4,304,134 + Psest_4124 0.46 -0.8 4,304,134 + Psest_4124 0.46 -1.6 4,304,215 + Psest_4124 0.71 -2.5 4,304,216 - Psest_4124 0.71 -0.9 4,304,242 + Psest_4124 0.80 -0.6 4,304,242 + Psest_4124 0.80 -1.7 4,304,366 + -3.2 4,304,386 + -1.8 4,304,444 + Psest_4125 0.13 -0.1 4,304,444 + Psest_4125 0.13 -1.3 4,304,444 + Psest_4125 0.13 -0.0 4,304,445 - Psest_4125 0.13 -1.9 4,304,445 - Psest_4125 0.13 -3.5 4,304,445 - Psest_4125 0.13 -2.8 4,304,445 - Psest_4125 0.13 -1.8 4,304,715 + Psest_4125 0.71 +0.2 4,304,715 + Psest_4125 0.71 -2.5 4,304,716 - Psest_4125 0.71 -0.5 4,304,716 - Psest_4125 0.71 -1.0 4,304,726 - Psest_4125 0.73 -1.1 4,304,772 + Psest_4125 0.83 -1.4 4,304,772 + Psest_4125 0.83 +0.4 4,304,772 + Psest_4125 0.83 -0.1 4,304,772 + Psest_4125 0.83 -0.3 4,304,772 + Psest_4125 0.83 -0.1 4,304,772 + Psest_4125 0.83 -0.3 4,304,772 + Psest_4125 0.83 -1.0 4,304,772 + Psest_4125 0.83 -0.3 4,304,772 + Psest_4125 0.83 -1.6 4,304,772 + Psest_4125 0.83 -1.7 4,304,772 + Psest_4125 0.83 -0.1 4,304,772 + Psest_4125 0.83 +0.6 4,304,773 - Psest_4125 0.83 -0.3 4,304,773 - Psest_4125 0.83 -0.9 4,304,773 - Psest_4125 0.83 -0.7 4,304,773 - Psest_4125 0.83 +0.1 4,304,773 - Psest_4125 0.83 +0.4 4,304,773 - Psest_4125 0.83 -0.7 4,304,849 + -0.4 4,305,101 + Psest_4126 0.68 -0.6 4,305,102 - Psest_4126 0.68 -0.4 4,305,221 - -0.3 4,305,221 - -2.7 4,305,247 + -1.4 4,305,247 + -1.8 4,305,247 + -0.6 4,305,248 - -0.9 4,305,248 - -1.7 4,305,257 + -1.0 4,305,258 - -1.9 4,305,258 - -1.1 4,305,258 - -0.6 4,305,258 - -0.7 4,305,258 - -0.5 4,305,258 - +0.5 4,305,295 + -1.8 4,305,295 + -0.3 4,305,295 + -1.5 4,305,296 - -2.3 4,305,296 - -0.3 4,305,306 + -1.1
Or see this region's nucleotide sequence