Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0400 and Psest_0401 are separated by 158 nucleotides Psest_0401 and Psest_0402 are separated by 20 nucleotides
Psest_0400: Psest_0400 - Geranylgeranyl pyrophosphate synthase, at 434,681 to 435,571
_0400
Psest_0401: Psest_0401 - isopentenyl-diphosphate delta-isomerase, type 2, at 435,730 to 436,770
_0401
Psest_0402: Psest_0402 - glycosyltransferase, MGT family, at 436,791 to 438,077
_0402
Position (kb) 435
436
437 Strain fitness (log2 ratio) -1
0
1
2 at 435.086 kb on + strand, within Psest_0400 at 435.086 kb on + strand, within Psest_0400 at 435.086 kb on + strand, within Psest_0400 at 435.086 kb on + strand, within Psest_0400 at 435.086 kb on + strand, within Psest_0400 at 435.087 kb on - strand, within Psest_0400 at 435.377 kb on + strand, within Psest_0400 at 435.377 kb on + strand, within Psest_0400 at 435.386 kb on + strand, within Psest_0400 at 435.386 kb on + strand, within Psest_0400 at 435.454 kb on + strand, within Psest_0400 at 435.455 kb on - strand, within Psest_0400 at 435.625 kb on - strand at 435.640 kb on + strand at 435.641 kb on - strand at 435.675 kb on + strand at 436.223 kb on + strand, within Psest_0401 at 436.658 kb on + strand, within Psest_0401 at 436.658 kb on + strand, within Psest_0401 at 436.821 kb on + strand at 436.822 kb on - strand at 437.298 kb on + strand, within Psest_0402 at 437.298 kb on + strand, within Psest_0402 at 437.298 kb on + strand, within Psest_0402 at 437.298 kb on + strand, within Psest_0402 at 437.401 kb on + strand, within Psest_0402 at 437.401 kb on + strand, within Psest_0402
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 435,086 + Psest_0400 0.45 -1.5 435,086 + Psest_0400 0.45 +0.2 435,086 + Psest_0400 0.45 +0.1 435,086 + Psest_0400 0.45 +1.8 435,086 + Psest_0400 0.45 +1.0 435,087 - Psest_0400 0.46 -1.5 435,377 + Psest_0400 0.78 +0.5 435,377 + Psest_0400 0.78 -0.1 435,386 + Psest_0400 0.79 +0.9 435,386 + Psest_0400 0.79 -0.1 435,454 + Psest_0400 0.87 +0.8 435,455 - Psest_0400 0.87 +1.5 435,625 - +1.9 435,640 + +0.4 435,641 - -0.5 435,675 + -1.1 436,223 + Psest_0401 0.47 +1.0 436,658 + Psest_0401 0.89 -0.2 436,658 + Psest_0401 0.89 -0.7 436,821 + -0.2 436,822 - +0.4 437,298 + Psest_0402 0.39 +0.7 437,298 + Psest_0402 0.39 +1.5 437,298 + Psest_0402 0.39 +1.6 437,298 + Psest_0402 0.39 +0.6 437,401 + Psest_0402 0.47 +1.5 437,401 + Psest_0402 0.47 +0.1
Or see this region's nucleotide sequence