Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0037 and Psest_0038 are separated by 79 nucleotides Psest_0038 and Psest_0039 are separated by 16 nucleotides Psest_0039 and Psest_0040 are separated by 248 nucleotides Psest_0040 and Psest_0041 are separated by 184 nucleotides
Psest_0037: Psest_0037 - trehalose synthase, Pseudomonas stutzeri type, at 38,805 to 40,874
_0037
Psest_0038: Psest_0038 - hypothetical protein, at 40,954 to 41,574
_0038
Psest_0039: Psest_0039 - phosphoglucomutase, alpha-D-glucose phosphate-specific, at 41,591 to 43,255
_0039
Psest_0040: Psest_0040 - Protein of unknown function (DUF2934)., at 43,504 to 43,701
_0040
Psest_0041: Psest_0041 - Uncharacterized protein conserved in bacteria, at 43,886 to 45,367
_0041
Position (kb) 41
42
43
44 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 40.906 kb on + strand at 40.908 kb on + strand at 40.908 kb on + strand at 40.909 kb on - strand at 40.909 kb on - strand at 40.983 kb on + strand at 40.984 kb on - strand at 40.984 kb on - strand at 41.122 kb on + strand, within Psest_0038 at 41.122 kb on + strand, within Psest_0038 at 41.123 kb on - strand, within Psest_0038 at 41.440 kb on + strand, within Psest_0038 at 41.440 kb on + strand, within Psest_0038 at 41.440 kb on + strand, within Psest_0038 at 41.440 kb on + strand, within Psest_0038 at 41.441 kb on - strand, within Psest_0038 at 41.441 kb on - strand, within Psest_0038 at 41.441 kb on - strand, within Psest_0038 at 41.441 kb on - strand, within Psest_0038 at 41.476 kb on + strand, within Psest_0038 at 41.477 kb on - strand, within Psest_0038 at 41.478 kb on + strand, within Psest_0038 at 41.478 kb on + strand, within Psest_0038 at 41.478 kb on + strand, within Psest_0038 at 41.478 kb on + strand, within Psest_0038 at 41.479 kb on - strand, within Psest_0038 at 41.479 kb on - strand, within Psest_0038 at 41.479 kb on - strand, within Psest_0038 at 41.479 kb on - strand, within Psest_0038 at 41.479 kb on - strand, within Psest_0038 at 41.479 kb on - strand, within Psest_0038 at 41.479 kb on - strand, within Psest_0038 at 41.676 kb on + strand at 41.685 kb on + strand at 41.685 kb on + strand at 41.685 kb on + strand at 41.686 kb on - strand at 41.686 kb on - strand at 41.932 kb on - strand, within Psest_0039 at 42.237 kb on + strand, within Psest_0039 at 42.237 kb on + strand, within Psest_0039 at 42.237 kb on + strand, within Psest_0039 at 42.238 kb on - strand, within Psest_0039 at 42.258 kb on + strand, within Psest_0039 at 42.258 kb on + strand, within Psest_0039 at 42.505 kb on - strand, within Psest_0039 at 42.600 kb on + strand, within Psest_0039 at 42.600 kb on + strand, within Psest_0039 at 42.600 kb on + strand, within Psest_0039 at 42.600 kb on + strand, within Psest_0039 at 42.600 kb on + strand, within Psest_0039 at 42.600 kb on + strand, within Psest_0039 at 42.600 kb on + strand, within Psest_0039 at 42.600 kb on + strand, within Psest_0039 at 42.600 kb on + strand, within Psest_0039 at 42.600 kb on + strand, within Psest_0039 at 42.600 kb on + strand, within Psest_0039 at 42.601 kb on - strand, within Psest_0039 at 42.601 kb on - strand, within Psest_0039 at 42.601 kb on - strand, within Psest_0039 at 42.601 kb on - strand, within Psest_0039 at 42.601 kb on - strand, within Psest_0039 at 42.762 kb on + strand, within Psest_0039 at 42.762 kb on + strand, within Psest_0039 at 42.762 kb on + strand, within Psest_0039 at 42.762 kb on + strand, within Psest_0039 at 42.762 kb on + strand, within Psest_0039 at 42.762 kb on + strand, within Psest_0039 at 42.762 kb on + strand, within Psest_0039 at 42.763 kb on - strand, within Psest_0039 at 42.763 kb on - strand, within Psest_0039 at 42.763 kb on - strand, within Psest_0039 at 42.763 kb on - strand, within Psest_0039 at 42.763 kb on - strand, within Psest_0039 at 42.763 kb on - strand, within Psest_0039 at 42.846 kb on + strand, within Psest_0039 at 42.846 kb on + strand, within Psest_0039 at 42.846 kb on + strand, within Psest_0039 at 42.847 kb on - strand, within Psest_0039 at 42.847 kb on - strand, within Psest_0039 at 42.847 kb on - strand, within Psest_0039 at 43.176 kb on + strand at 43.176 kb on + strand at 43.176 kb on + strand at 43.177 kb on - strand at 43.177 kb on - strand at 43.177 kb on - strand at 43.177 kb on - strand at 43.177 kb on - strand at 43.177 kb on - strand at 43.337 kb on + strand at 43.338 kb on - strand at 43.347 kb on + strand at 43.347 kb on + strand at 43.348 kb on - strand at 43.537 kb on + strand, within Psest_0040 at 43.538 kb on - strand, within Psest_0040 at 43.621 kb on + strand, within Psest_0040 at 43.621 kb on + strand, within Psest_0040 at 43.621 kb on + strand, within Psest_0040 at 43.621 kb on + strand, within Psest_0040 at 43.621 kb on + strand, within Psest_0040 at 43.621 kb on + strand, within Psest_0040 at 43.621 kb on + strand, within Psest_0040 at 43.621 kb on + strand, within Psest_0040 at 43.621 kb on + strand, within Psest_0040 at 43.622 kb on + strand, within Psest_0040 at 43.622 kb on - strand, within Psest_0040 at 43.622 kb on - strand, within Psest_0040 at 43.622 kb on - strand, within Psest_0040 at 43.622 kb on - strand, within Psest_0040 at 43.622 kb on - strand, within Psest_0040 at 43.622 kb on - strand, within Psest_0040 at 43.622 kb on - strand, within Psest_0040 at 43.699 kb on + strand at 43.818 kb on + strand at 43.818 kb on + strand at 43.819 kb on - strand at 43.819 kb on - strand at 43.914 kb on + strand at 43.915 kb on - strand at 43.946 kb on + strand at 43.947 kb on - strand at 44.093 kb on + strand, within Psest_0041
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 40,906 + -0.5 40,908 + -0.6 40,908 + +0.9 40,909 - +1.0 40,909 - -0.5 40,983 + -1.3 40,984 - +0.4 40,984 - +1.4 41,122 + Psest_0038 0.27 -0.0 41,122 + Psest_0038 0.27 -0.6 41,123 - Psest_0038 0.27 +1.6 41,440 + Psest_0038 0.78 +1.6 41,440 + Psest_0038 0.78 +0.9 41,440 + Psest_0038 0.78 +2.3 41,440 + Psest_0038 0.78 +1.6 41,441 - Psest_0038 0.78 -2.5 41,441 - Psest_0038 0.78 -0.4 41,441 - Psest_0038 0.78 +0.3 41,441 - Psest_0038 0.78 +0.1 41,476 + Psest_0038 0.84 +0.4 41,477 - Psest_0038 0.84 +1.2 41,478 + Psest_0038 0.84 +1.2 41,478 + Psest_0038 0.84 +2.3 41,478 + Psest_0038 0.84 +0.8 41,478 + Psest_0038 0.84 +0.4 41,479 - Psest_0038 0.85 -1.9 41,479 - Psest_0038 0.85 -0.4 41,479 - Psest_0038 0.85 -0.7 41,479 - Psest_0038 0.85 -0.8 41,479 - Psest_0038 0.85 -0.2 41,479 - Psest_0038 0.85 -0.3 41,479 - Psest_0038 0.85 -1.1 41,676 + +0.2 41,685 + +1.7 41,685 + +0.4 41,685 + +2.0 41,686 - -0.7 41,686 - +0.4 41,932 - Psest_0039 0.20 +1.6 42,237 + Psest_0039 0.39 -0.0 42,237 + Psest_0039 0.39 +0.1 42,237 + Psest_0039 0.39 +0.6 42,238 - Psest_0039 0.39 +2.1 42,258 + Psest_0039 0.40 +1.6 42,258 + Psest_0039 0.40 -0.7 42,505 - Psest_0039 0.55 +0.8 42,600 + Psest_0039 0.61 +0.6 42,600 + Psest_0039 0.61 -0.2 42,600 + Psest_0039 0.61 +0.6 42,600 + Psest_0039 0.61 +0.4 42,600 + Psest_0039 0.61 +0.3 42,600 + Psest_0039 0.61 +2.1 42,600 + Psest_0039 0.61 +0.3 42,600 + Psest_0039 0.61 -0.2 42,600 + Psest_0039 0.61 +0.5 42,600 + Psest_0039 0.61 +1.2 42,600 + Psest_0039 0.61 +0.7 42,601 - Psest_0039 0.61 +1.9 42,601 - Psest_0039 0.61 +1.6 42,601 - Psest_0039 0.61 +0.3 42,601 - Psest_0039 0.61 +1.5 42,601 - Psest_0039 0.61 +0.9 42,762 + Psest_0039 0.70 +0.4 42,762 + Psest_0039 0.70 -0.6 42,762 + Psest_0039 0.70 +1.0 42,762 + Psest_0039 0.70 -0.2 42,762 + Psest_0039 0.70 -0.2 42,762 + Psest_0039 0.70 -0.2 42,762 + Psest_0039 0.70 +0.6 42,763 - Psest_0039 0.70 +0.1 42,763 - Psest_0039 0.70 +0.2 42,763 - Psest_0039 0.70 +1.0 42,763 - Psest_0039 0.70 +1.1 42,763 - Psest_0039 0.70 -0.4 42,763 - Psest_0039 0.70 +0.3 42,846 + Psest_0039 0.75 +0.8 42,846 + Psest_0039 0.75 -0.0 42,846 + Psest_0039 0.75 +0.4 42,847 - Psest_0039 0.75 +0.0 42,847 - Psest_0039 0.75 +0.9 42,847 - Psest_0039 0.75 +0.9 43,176 + +2.8 43,176 + +1.4 43,176 + +2.0 43,177 - +2.2 43,177 - +1.4 43,177 - -1.5 43,177 - -0.2 43,177 - +0.9 43,177 - +0.3 43,337 + +1.3 43,338 - +0.4 43,347 + -1.3 43,347 + +1.1 43,348 - +1.0 43,537 + Psest_0040 0.17 +1.9 43,538 - Psest_0040 0.17 +1.0 43,621 + Psest_0040 0.59 +0.9 43,621 + Psest_0040 0.59 +0.8 43,621 + Psest_0040 0.59 +0.1 43,621 + Psest_0040 0.59 +0.8 43,621 + Psest_0040 0.59 +0.9 43,621 + Psest_0040 0.59 +0.8 43,621 + Psest_0040 0.59 -0.7 43,621 + Psest_0040 0.59 +1.3 43,621 + Psest_0040 0.59 +0.6 43,622 + Psest_0040 0.60 +0.5 43,622 - Psest_0040 0.60 +0.7 43,622 - Psest_0040 0.60 -0.9 43,622 - Psest_0040 0.60 +1.2 43,622 - Psest_0040 0.60 -0.1 43,622 - Psest_0040 0.60 -0.6 43,622 - Psest_0040 0.60 -0.2 43,622 - Psest_0040 0.60 -0.5 43,699 + +0.0 43,818 + -1.0 43,818 + -1.5 43,819 - +1.4 43,819 - -1.4 43,914 + -0.9 43,915 - +1.4 43,946 + -0.6 43,947 - +0.4 44,093 + Psest_0041 0.14 +1.4
Or see this region's nucleotide sequence