Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3964 and Psest_3965 are separated by 202 nucleotides Psest_3965 and Psest_3966 are separated by 118 nucleotides Psest_3966 and Psest_3967 are separated by 36 nucleotides
Psest_3964: Psest_3964 - formate dehydrogenase family accessory protein FdhD, at 4,131,858 to 4,132,706
_3964
Psest_3965: Psest_3965 - hypothetical protein, at 4,132,909 to 4,133,367
_3965
Psest_3966: Psest_3966 - Predicted thioesterase, at 4,133,486 to 4,133,917
_3966
Psest_3967: Psest_3967 - Alcohol dehydrogenase, class IV, at 4,133,954 to 4,135,117
_3967
Position (kb) 4133
4134 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4132.550 kb on - strand, within Psest_3964 at 4132.550 kb on - strand, within Psest_3964 at 4132.550 kb on - strand, within Psest_3964 at 4132.550 kb on - strand, within Psest_3964 at 4132.671 kb on + strand at 4132.671 kb on + strand at 4132.671 kb on + strand at 4132.671 kb on + strand at 4132.730 kb on + strand at 4132.730 kb on + strand at 4132.730 kb on + strand at 4132.730 kb on + strand at 4132.730 kb on + strand at 4132.730 kb on + strand at 4132.730 kb on + strand at 4132.730 kb on + strand at 4132.730 kb on + strand at 4132.730 kb on + strand at 4132.730 kb on + strand at 4132.730 kb on + strand at 4132.730 kb on + strand at 4132.730 kb on + strand at 4132.730 kb on + strand at 4132.744 kb on - strand at 4132.915 kb on + strand at 4132.915 kb on + strand at 4132.915 kb on + strand at 4132.915 kb on + strand at 4132.916 kb on - strand at 4132.916 kb on - strand at 4132.916 kb on - strand at 4132.916 kb on - strand at 4132.916 kb on - strand at 4132.916 kb on - strand at 4133.025 kb on - strand, within Psest_3965 at 4133.025 kb on - strand, within Psest_3965 at 4133.184 kb on - strand, within Psest_3965 at 4133.184 kb on - strand, within Psest_3965 at 4133.190 kb on + strand, within Psest_3965 at 4133.308 kb on + strand, within Psest_3965 at 4133.309 kb on - strand, within Psest_3965 at 4133.309 kb on - strand, within Psest_3965 at 4133.309 kb on - strand, within Psest_3965 at 4133.311 kb on + strand, within Psest_3965 at 4133.311 kb on + strand, within Psest_3965 at 4133.312 kb on - strand, within Psest_3965 at 4133.312 kb on - strand, within Psest_3965 at 4133.341 kb on + strand at 4133.341 kb on + strand at 4133.341 kb on + strand at 4133.342 kb on - strand at 4133.342 kb on - strand at 4133.625 kb on + strand, within Psest_3966 at 4133.660 kb on + strand, within Psest_3966 at 4133.703 kb on + strand, within Psest_3966 at 4133.703 kb on + strand, within Psest_3966 at 4133.703 kb on + strand, within Psest_3966 at 4133.704 kb on - strand, within Psest_3966 at 4133.704 kb on - strand, within Psest_3966 at 4133.778 kb on + strand, within Psest_3966 at 4133.778 kb on + strand, within Psest_3966 at 4133.778 kb on + strand, within Psest_3966 at 4133.778 kb on + strand, within Psest_3966 at 4133.778 kb on + strand, within Psest_3966 at 4133.778 kb on + strand, within Psest_3966 at 4133.778 kb on + strand, within Psest_3966 at 4133.778 kb on + strand, within Psest_3966 at 4133.778 kb on + strand, within Psest_3966 at 4133.778 kb on + strand, within Psest_3966 at 4133.778 kb on + strand, within Psest_3966 at 4133.778 kb on + strand, within Psest_3966 at 4133.779 kb on - strand, within Psest_3966 at 4133.779 kb on - strand, within Psest_3966 at 4133.779 kb on - strand, within Psest_3966 at 4133.779 kb on - strand, within Psest_3966 at 4133.779 kb on - strand, within Psest_3966 at 4133.779 kb on - strand, within Psest_3966 at 4133.779 kb on - strand, within Psest_3966 at 4133.779 kb on - strand, within Psest_3966 at 4133.779 kb on - strand, within Psest_3966 at 4133.779 kb on - strand, within Psest_3966 at 4133.779 kb on - strand, within Psest_3966 at 4133.779 kb on - strand, within Psest_3966 at 4133.779 kb on - strand, within Psest_3966 at 4133.779 kb on - strand, within Psest_3966 at 4133.809 kb on - strand, within Psest_3966 at 4133.811 kb on + strand, within Psest_3966 at 4133.811 kb on + strand, within Psest_3966 at 4133.811 kb on + strand, within Psest_3966 at 4133.812 kb on - strand, within Psest_3966 at 4133.835 kb on + strand, within Psest_3966 at 4133.835 kb on + strand, within Psest_3966 at 4133.835 kb on + strand, within Psest_3966 at 4133.835 kb on + strand, within Psest_3966 at 4133.836 kb on - strand, within Psest_3966 at 4133.836 kb on - strand, within Psest_3966 at 4133.839 kb on + strand, within Psest_3966 at 4133.839 kb on + strand, within Psest_3966 at 4133.840 kb on - strand, within Psest_3966 at 4133.840 kb on - strand, within Psest_3966 at 4133.860 kb on + strand, within Psest_3966 at 4133.860 kb on + strand, within Psest_3966 at 4133.883 kb on + strand at 4133.883 kb on + strand at 4133.883 kb on + strand at 4133.959 kb on - strand at 4133.970 kb on + strand at 4133.970 kb on + strand at 4133.970 kb on + strand at 4133.970 kb on + strand at 4133.971 kb on - strand at 4134.153 kb on + strand, within Psest_3967 at 4134.213 kb on + strand, within Psest_3967 at 4134.214 kb on - strand, within Psest_3967 at 4134.290 kb on - strand, within Psest_3967 at 4134.312 kb on + strand, within Psest_3967 at 4134.313 kb on - strand, within Psest_3967 at 4134.507 kb on + strand, within Psest_3967 at 4134.507 kb on + strand, within Psest_3967 at 4134.508 kb on - strand, within Psest_3967 at 4134.623 kb on + strand, within Psest_3967 at 4134.750 kb on + strand, within Psest_3967 at 4134.750 kb on + strand, within Psest_3967 at 4134.751 kb on - strand, within Psest_3967 at 4134.751 kb on - strand, within Psest_3967 at 4134.914 kb on + strand, within Psest_3967
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 4,132,550 - Psest_3964 0.82 -0.5 4,132,550 - Psest_3964 0.82 +1.5 4,132,550 - Psest_3964 0.82 +1.6 4,132,550 - Psest_3964 0.82 -0.1 4,132,671 + +0.8 4,132,671 + -0.8 4,132,671 + -0.4 4,132,671 + +0.2 4,132,730 + -0.6 4,132,730 + +0.4 4,132,730 + -0.4 4,132,730 + -2.9 4,132,730 + -0.8 4,132,730 + -0.3 4,132,730 + +0.3 4,132,730 + -0.4 4,132,730 + +0.4 4,132,730 + +0.2 4,132,730 + +0.0 4,132,730 + -1.5 4,132,730 + -0.4 4,132,730 + +0.1 4,132,730 + +0.0 4,132,744 - +0.6 4,132,915 + +0.6 4,132,915 + +1.0 4,132,915 + +0.8 4,132,915 + +2.2 4,132,916 - +1.1 4,132,916 - -1.3 4,132,916 - -2.5 4,132,916 - -1.1 4,132,916 - -0.6 4,132,916 - -3.0 4,133,025 - Psest_3965 0.25 -0.3 4,133,025 - Psest_3965 0.25 -0.5 4,133,184 - Psest_3965 0.60 +1.4 4,133,184 - Psest_3965 0.60 -0.2 4,133,190 + Psest_3965 0.61 +1.7 4,133,308 + Psest_3965 0.87 +2.3 4,133,309 - Psest_3965 0.87 -1.0 4,133,309 - Psest_3965 0.87 -0.1 4,133,309 - Psest_3965 0.87 -2.2 4,133,311 + Psest_3965 0.88 +1.7 4,133,311 + Psest_3965 0.88 +2.2 4,133,312 - Psest_3965 0.88 -2.2 4,133,312 - Psest_3965 0.88 -1.2 4,133,341 + +2.4 4,133,341 + +1.1 4,133,341 + +1.3 4,133,342 - -0.2 4,133,342 - -1.8 4,133,625 + Psest_3966 0.32 +0.4 4,133,660 + Psest_3966 0.40 +1.4 4,133,703 + Psest_3966 0.50 +0.3 4,133,703 + Psest_3966 0.50 +1.0 4,133,703 + Psest_3966 0.50 -1.3 4,133,704 - Psest_3966 0.50 +0.4 4,133,704 - Psest_3966 0.50 +0.4 4,133,778 + Psest_3966 0.68 +1.7 4,133,778 + Psest_3966 0.68 +0.9 4,133,778 + Psest_3966 0.68 +0.6 4,133,778 + Psest_3966 0.68 +0.1 4,133,778 + Psest_3966 0.68 +0.1 4,133,778 + Psest_3966 0.68 +0.9 4,133,778 + Psest_3966 0.68 +0.6 4,133,778 + Psest_3966 0.68 +1.1 4,133,778 + Psest_3966 0.68 -1.3 4,133,778 + Psest_3966 0.68 +0.0 4,133,778 + Psest_3966 0.68 +1.0 4,133,778 + Psest_3966 0.68 +0.4 4,133,779 - Psest_3966 0.68 +1.3 4,133,779 - Psest_3966 0.68 +0.4 4,133,779 - Psest_3966 0.68 +2.3 4,133,779 - Psest_3966 0.68 -0.0 4,133,779 - Psest_3966 0.68 +1.0 4,133,779 - Psest_3966 0.68 +1.6 4,133,779 - Psest_3966 0.68 +0.6 4,133,779 - Psest_3966 0.68 +0.8 4,133,779 - Psest_3966 0.68 +0.9 4,133,779 - Psest_3966 0.68 +2.2 4,133,779 - Psest_3966 0.68 +1.9 4,133,779 - Psest_3966 0.68 +1.4 4,133,779 - Psest_3966 0.68 +2.0 4,133,779 - Psest_3966 0.68 +0.0 4,133,809 - Psest_3966 0.75 +1.3 4,133,811 + Psest_3966 0.75 +2.2 4,133,811 + Psest_3966 0.75 +1.8 4,133,811 + Psest_3966 0.75 +1.5 4,133,812 - Psest_3966 0.75 +1.2 4,133,835 + Psest_3966 0.81 +1.3 4,133,835 + Psest_3966 0.81 +1.0 4,133,835 + Psest_3966 0.81 -1.0 4,133,835 + Psest_3966 0.81 +1.1 4,133,836 - Psest_3966 0.81 +0.9 4,133,836 - Psest_3966 0.81 +0.5 4,133,839 + Psest_3966 0.82 +0.7 4,133,839 + Psest_3966 0.82 +1.1 4,133,840 - Psest_3966 0.82 +0.3 4,133,840 - Psest_3966 0.82 -0.6 4,133,860 + Psest_3966 0.87 +0.8 4,133,860 + Psest_3966 0.87 +1.5 4,133,883 + -0.3 4,133,883 + +1.0 4,133,883 + +2.7 4,133,959 - +1.1 4,133,970 + +0.5 4,133,970 + -0.8 4,133,970 + -0.1 4,133,970 + +0.5 4,133,971 - -0.1 4,134,153 + Psest_3967 0.17 +0.4 4,134,213 + Psest_3967 0.22 +0.9 4,134,214 - Psest_3967 0.22 -0.5 4,134,290 - Psest_3967 0.29 +0.1 4,134,312 + Psest_3967 0.31 +1.2 4,134,313 - Psest_3967 0.31 +0.3 4,134,507 + Psest_3967 0.48 +1.9 4,134,507 + Psest_3967 0.48 +1.7 4,134,508 - Psest_3967 0.48 +1.6 4,134,623 + Psest_3967 0.57 -0.1 4,134,750 + Psest_3967 0.68 +0.2 4,134,750 + Psest_3967 0.68 +0.4 4,134,751 - Psest_3967 0.68 +0.4 4,134,751 - Psest_3967 0.68 -0.8 4,134,914 + Psest_3967 0.82 -0.3
Or see this region's nucleotide sequence