Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0038

Experiment: Def Carbenicillin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0037 and Psest_0038 are separated by 79 nucleotidesPsest_0038 and Psest_0039 are separated by 16 nucleotides Psest_0037: Psest_0037 - trehalose synthase, Pseudomonas stutzeri type, at 38,805 to 40,874 _0037 Psest_0038: Psest_0038 - hypothetical protein, at 40,954 to 41,574 _0038 Psest_0039: Psest_0039 - phosphoglucomutase, alpha-D-glucose phosphate-specific, at 41,591 to 43,255 _0039 Position (kb) 40 41 42Strain fitness (log2 ratio) -2 -1 0 1 2at 40.057 kb on - strand, within Psest_0037at 40.071 kb on + strand, within Psest_0037at 40.071 kb on + strand, within Psest_0037at 40.071 kb on + strand, within Psest_0037at 40.071 kb on + strand, within Psest_0037at 40.071 kb on + strand, within Psest_0037at 40.072 kb on - strand, within Psest_0037at 40.072 kb on - strand, within Psest_0037at 40.072 kb on - strand, within Psest_0037at 40.072 kb on - strand, within Psest_0037at 40.129 kb on - strand, within Psest_0037at 40.129 kb on - strand, within Psest_0037at 40.129 kb on - strand, within Psest_0037at 40.159 kb on - strand, within Psest_0037at 40.159 kb on - strand, within Psest_0037at 40.159 kb on - strand, within Psest_0037at 40.283 kb on + strand, within Psest_0037at 40.283 kb on + strand, within Psest_0037at 40.284 kb on - strand, within Psest_0037at 40.284 kb on - strand, within Psest_0037at 40.284 kb on - strand, within Psest_0037at 40.284 kb on - strand, within Psest_0037at 40.284 kb on - strand, within Psest_0037at 40.562 kb on + strand, within Psest_0037at 40.578 kb on + strand, within Psest_0037at 40.579 kb on - strand, within Psest_0037at 40.579 kb on - strand, within Psest_0037at 40.579 kb on - strand, within Psest_0037at 40.906 kb on + strandat 40.908 kb on + strandat 40.908 kb on + strandat 40.909 kb on - strandat 40.909 kb on - strandat 40.983 kb on + strandat 40.984 kb on - strandat 40.984 kb on - strandat 41.122 kb on + strand, within Psest_0038at 41.122 kb on + strand, within Psest_0038at 41.123 kb on - strand, within Psest_0038at 41.440 kb on + strand, within Psest_0038at 41.440 kb on + strand, within Psest_0038at 41.440 kb on + strand, within Psest_0038at 41.440 kb on + strand, within Psest_0038at 41.441 kb on - strand, within Psest_0038at 41.441 kb on - strand, within Psest_0038at 41.441 kb on - strand, within Psest_0038at 41.441 kb on - strand, within Psest_0038at 41.476 kb on + strand, within Psest_0038at 41.477 kb on - strand, within Psest_0038at 41.478 kb on + strand, within Psest_0038at 41.478 kb on + strand, within Psest_0038at 41.478 kb on + strand, within Psest_0038at 41.478 kb on + strand, within Psest_0038at 41.479 kb on - strand, within Psest_0038at 41.479 kb on - strand, within Psest_0038at 41.479 kb on - strand, within Psest_0038at 41.479 kb on - strand, within Psest_0038at 41.479 kb on - strand, within Psest_0038at 41.479 kb on - strand, within Psest_0038at 41.479 kb on - strand, within Psest_0038at 41.676 kb on + strandat 41.685 kb on + strandat 41.685 kb on + strandat 41.685 kb on + strandat 41.686 kb on - strandat 41.686 kb on - strandat 41.932 kb on - strand, within Psest_0039at 42.237 kb on + strand, within Psest_0039at 42.237 kb on + strand, within Psest_0039at 42.237 kb on + strand, within Psest_0039at 42.238 kb on - strand, within Psest_0039at 42.258 kb on + strand, within Psest_0039at 42.258 kb on + strand, within Psest_0039at 42.505 kb on - strand, within Psest_0039

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml
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40,057 - Psest_0037 0.60 +0.2
40,071 + Psest_0037 0.61 -0.6
40,071 + Psest_0037 0.61 -1.6
40,071 + Psest_0037 0.61 -0.6
40,071 + Psest_0037 0.61 +0.3
40,071 + Psest_0037 0.61 -1.0
40,072 - Psest_0037 0.61 +2.2
40,072 - Psest_0037 0.61 +1.6
40,072 - Psest_0037 0.61 -0.4
40,072 - Psest_0037 0.61 -1.1
40,129 - Psest_0037 0.64 +1.3
40,129 - Psest_0037 0.64 -1.8
40,129 - Psest_0037 0.64 +0.3
40,159 - Psest_0037 0.65 +1.8
40,159 - Psest_0037 0.65 -0.4
40,159 - Psest_0037 0.65 +0.3
40,283 + Psest_0037 0.71 +0.2
40,283 + Psest_0037 0.71 -0.5
40,284 - Psest_0037 0.71 +0.2
40,284 - Psest_0037 0.71 +1.8
40,284 - Psest_0037 0.71 +0.4
40,284 - Psest_0037 0.71 -2.3
40,284 - Psest_0037 0.71 -1.0
40,562 + Psest_0037 0.85 +1.6
40,578 + Psest_0037 0.86 +0.2
40,579 - Psest_0037 0.86 +0.2
40,579 - Psest_0037 0.86 +2.5
40,579 - Psest_0037 0.86 +0.1
40,906 + -0.5
40,908 + -0.6
40,908 + +0.9
40,909 - +1.0
40,909 - -0.5
40,983 + -1.3
40,984 - +0.4
40,984 - +1.4
41,122 + Psest_0038 0.27 -0.0
41,122 + Psest_0038 0.27 -0.6
41,123 - Psest_0038 0.27 +1.6
41,440 + Psest_0038 0.78 +1.6
41,440 + Psest_0038 0.78 +0.9
41,440 + Psest_0038 0.78 +2.3
41,440 + Psest_0038 0.78 +1.6
41,441 - Psest_0038 0.78 -2.5
41,441 - Psest_0038 0.78 -0.4
41,441 - Psest_0038 0.78 +0.3
41,441 - Psest_0038 0.78 +0.1
41,476 + Psest_0038 0.84 +0.4
41,477 - Psest_0038 0.84 +1.2
41,478 + Psest_0038 0.84 +1.2
41,478 + Psest_0038 0.84 +2.3
41,478 + Psest_0038 0.84 +0.8
41,478 + Psest_0038 0.84 +0.4
41,479 - Psest_0038 0.85 -1.9
41,479 - Psest_0038 0.85 -0.4
41,479 - Psest_0038 0.85 -0.7
41,479 - Psest_0038 0.85 -0.8
41,479 - Psest_0038 0.85 -0.2
41,479 - Psest_0038 0.85 -0.3
41,479 - Psest_0038 0.85 -1.1
41,676 + +0.2
41,685 + +1.7
41,685 + +0.4
41,685 + +2.0
41,686 - -0.7
41,686 - +0.4
41,932 - Psest_0039 0.20 +1.6
42,237 + Psest_0039 0.39 -0.0
42,237 + Psest_0039 0.39 +0.1
42,237 + Psest_0039 0.39 +0.6
42,238 - Psest_0039 0.39 +2.1
42,258 + Psest_0039 0.40 +1.6
42,258 + Psest_0039 0.40 -0.7
42,505 - Psest_0039 0.55 +0.8

Or see this region's nucleotide sequence