Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0371

Experiment: Def Carbenicillin 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0370 and Psest_0371 are separated by 10 nucleotidesPsest_0371 and Psest_0372 are separated by 67 nucleotides Psest_0370: Psest_0370 - Uncharacterized protein conserved in bacteria, at 396,146 to 397,666 _0370 Psest_0371: Psest_0371 - hypothetical protein, at 397,677 to 398,171 _0371 Psest_0372: Psest_0372 - Uncharacterized protein conserved in bacteria, at 398,239 to 399,219 _0372 Position (kb) 397 398 399Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 396.780 kb on + strand, within Psest_0370at 396.781 kb on - strand, within Psest_0370at 396.819 kb on + strand, within Psest_0370at 396.819 kb on + strand, within Psest_0370at 396.819 kb on + strand, within Psest_0370at 396.819 kb on + strand, within Psest_0370at 396.819 kb on + strand, within Psest_0370at 396.819 kb on + strand, within Psest_0370at 396.819 kb on + strand, within Psest_0370at 396.819 kb on + strand, within Psest_0370at 396.819 kb on + strand, within Psest_0370at 396.820 kb on - strand, within Psest_0370at 397.233 kb on + strand, within Psest_0370at 397.233 kb on + strand, within Psest_0370at 397.233 kb on + strand, within Psest_0370at 397.233 kb on + strand, within Psest_0370at 397.233 kb on + strand, within Psest_0370at 397.233 kb on + strand, within Psest_0370at 397.234 kb on - strand, within Psest_0370at 397.234 kb on - strand, within Psest_0370at 397.234 kb on - strand, within Psest_0370at 397.460 kb on - strand, within Psest_0370at 397.655 kb on + strandat 397.655 kb on + strandat 397.655 kb on + strandat 397.655 kb on + strandat 397.656 kb on - strandat 397.656 kb on - strandat 397.738 kb on + strand, within Psest_0371at 397.738 kb on + strand, within Psest_0371at 397.738 kb on + strand, within Psest_0371at 397.738 kb on + strand, within Psest_0371at 397.738 kb on + strand, within Psest_0371at 397.738 kb on + strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.828 kb on + strand, within Psest_0371at 397.828 kb on + strand, within Psest_0371at 397.829 kb on - strand, within Psest_0371at 397.829 kb on - strand, within Psest_0371at 397.834 kb on + strand, within Psest_0371at 397.834 kb on + strand, within Psest_0371at 397.834 kb on + strand, within Psest_0371at 397.835 kb on - strand, within Psest_0371at 397.835 kb on - strand, within Psest_0371at 397.835 kb on - strand, within Psest_0371at 397.882 kb on + strand, within Psest_0371at 397.882 kb on + strand, within Psest_0371at 397.882 kb on + strand, within Psest_0371at 397.883 kb on - strand, within Psest_0371at 397.883 kb on - strand, within Psest_0371at 397.883 kb on - strand, within Psest_0371at 397.968 kb on + strand, within Psest_0371at 398.085 kb on + strand, within Psest_0371at 398.086 kb on - strand, within Psest_0371at 398.107 kb on + strand, within Psest_0371at 398.107 kb on + strand, within Psest_0371at 398.107 kb on + strand, within Psest_0371at 398.108 kb on - strand, within Psest_0371at 398.108 kb on - strand, within Psest_0371at 398.134 kb on - strandat 398.134 kb on - strandat 398.240 kb on + strandat 398.240 kb on + strandat 398.241 kb on - strandat 398.241 kb on - strandat 398.241 kb on - strandat 398.327 kb on + strandat 398.328 kb on - strandat 398.330 kb on + strandat 398.369 kb on + strand, within Psest_0372at 398.456 kb on + strand, within Psest_0372at 398.456 kb on + strand, within Psest_0372at 398.457 kb on - strand, within Psest_0372at 398.573 kb on + strand, within Psest_0372at 398.573 kb on + strand, within Psest_0372at 398.573 kb on + strand, within Psest_0372at 398.573 kb on + strand, within Psest_0372at 398.573 kb on + strand, within Psest_0372at 398.573 kb on + strand, within Psest_0372at 398.574 kb on - strand, within Psest_0372at 398.574 kb on - strand, within Psest_0372at 398.574 kb on - strand, within Psest_0372at 398.574 kb on - strand, within Psest_0372at 398.574 kb on - strand, within Psest_0372at 398.591 kb on + strand, within Psest_0372at 398.591 kb on + strand, within Psest_0372at 398.591 kb on + strand, within Psest_0372at 398.592 kb on - strand, within Psest_0372at 398.592 kb on - strand, within Psest_0372at 398.741 kb on + strand, within Psest_0372at 398.741 kb on + strand, within Psest_0372at 398.873 kb on + strand, within Psest_0372at 398.873 kb on + strand, within Psest_0372at 399.004 kb on - strand, within Psest_0372at 399.044 kb on + strand, within Psest_0372at 399.044 kb on + strand, within Psest_0372at 399.044 kb on + strand, within Psest_0372at 399.045 kb on - strand, within Psest_0372at 399.045 kb on - strand, within Psest_0372at 399.045 kb on - strand, within Psest_0372

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml
remove
396,780 + Psest_0370 0.42 +1.0
396,781 - Psest_0370 0.42 -0.4
396,819 + Psest_0370 0.44 -0.4
396,819 + Psest_0370 0.44 -2.0
396,819 + Psest_0370 0.44 +1.5
396,819 + Psest_0370 0.44 +1.7
396,819 + Psest_0370 0.44 +0.1
396,819 + Psest_0370 0.44 +0.4
396,819 + Psest_0370 0.44 +0.3
396,819 + Psest_0370 0.44 -1.0
396,819 + Psest_0370 0.44 -0.4
396,820 - Psest_0370 0.44 +1.6
397,233 + Psest_0370 0.71 +0.7
397,233 + Psest_0370 0.71 -0.5
397,233 + Psest_0370 0.71 +0.9
397,233 + Psest_0370 0.71 -0.0
397,233 + Psest_0370 0.71 -0.3
397,233 + Psest_0370 0.71 +0.1
397,234 - Psest_0370 0.72 -2.3
397,234 - Psest_0370 0.72 +0.1
397,234 - Psest_0370 0.72 +0.3
397,460 - Psest_0370 0.86 +0.1
397,655 + +0.3
397,655 + -0.0
397,655 + -1.1
397,655 + -1.1
397,656 - -1.7
397,656 - +1.0
397,738 + Psest_0371 0.12 -1.3
397,738 + Psest_0371 0.12 -0.8
397,738 + Psest_0371 0.12 -0.4
397,738 + Psest_0371 0.12 -0.7
397,738 + Psest_0371 0.12 -0.6
397,738 + Psest_0371 0.12 -1.0
397,739 - Psest_0371 0.13 -2.1
397,739 - Psest_0371 0.13 -1.4
397,739 - Psest_0371 0.13 +1.8
397,739 - Psest_0371 0.13 -0.5
397,739 - Psest_0371 0.13 -0.5
397,739 - Psest_0371 0.13 -0.6
397,739 - Psest_0371 0.13 +1.0
397,739 - Psest_0371 0.13 -1.7
397,739 - Psest_0371 0.13 -0.7
397,739 - Psest_0371 0.13 -0.8
397,739 - Psest_0371 0.13 +0.1
397,739 - Psest_0371 0.13 -1.0
397,739 - Psest_0371 0.13 +0.2
397,828 + Psest_0371 0.31 -0.2
397,828 + Psest_0371 0.31 +1.4
397,829 - Psest_0371 0.31 -1.7
397,829 - Psest_0371 0.31 -1.8
397,834 + Psest_0371 0.32 -0.9
397,834 + Psest_0371 0.32 +0.2
397,834 + Psest_0371 0.32 -0.7
397,835 - Psest_0371 0.32 -1.5
397,835 - Psest_0371 0.32 -1.4
397,835 - Psest_0371 0.32 -1.0
397,882 + Psest_0371 0.41 -0.6
397,882 + Psest_0371 0.41 +1.1
397,882 + Psest_0371 0.41 -0.4
397,883 - Psest_0371 0.42 -0.8
397,883 - Psest_0371 0.42 -0.2
397,883 - Psest_0371 0.42 -2.8
397,968 + Psest_0371 0.59 -0.2
398,085 + Psest_0371 0.82 -0.7
398,086 - Psest_0371 0.83 -1.3
398,107 + Psest_0371 0.87 -0.0
398,107 + Psest_0371 0.87 -0.0
398,107 + Psest_0371 0.87 +0.6
398,108 - Psest_0371 0.87 +0.4
398,108 - Psest_0371 0.87 -1.3
398,134 - -0.8
398,134 - -0.2
398,240 + +1.4
398,240 + -0.5
398,241 - +1.8
398,241 - +0.8
398,241 - +2.0
398,327 + +1.7
398,328 - +0.9
398,330 + -0.7
398,369 + Psest_0372 0.13 -0.8
398,456 + Psest_0372 0.22 +0.8
398,456 + Psest_0372 0.22 +1.4
398,457 - Psest_0372 0.22 -0.1
398,573 + Psest_0372 0.34 +0.4
398,573 + Psest_0372 0.34 -0.7
398,573 + Psest_0372 0.34 -1.9
398,573 + Psest_0372 0.34 +3.5
398,573 + Psest_0372 0.34 +0.1
398,573 + Psest_0372 0.34 -0.4
398,574 - Psest_0372 0.34 +0.5
398,574 - Psest_0372 0.34 -0.1
398,574 - Psest_0372 0.34 -1.9
398,574 - Psest_0372 0.34 -0.0
398,574 - Psest_0372 0.34 -1.8
398,591 + Psest_0372 0.36 +1.3
398,591 + Psest_0372 0.36 -0.4
398,591 + Psest_0372 0.36 +2.1
398,592 - Psest_0372 0.36 -2.2
398,592 - Psest_0372 0.36 -1.5
398,741 + Psest_0372 0.51 +0.9
398,741 + Psest_0372 0.51 -0.5
398,873 + Psest_0372 0.65 +0.2
398,873 + Psest_0372 0.65 +1.5
399,004 - Psest_0372 0.78 -0.7
399,044 + Psest_0372 0.82 +1.0
399,044 + Psest_0372 0.82 +0.6
399,044 + Psest_0372 0.82 -0.4
399,045 - Psest_0372 0.82 -0.8
399,045 - Psest_0372 0.82 +1.3
399,045 - Psest_0372 0.82 -1.1

Or see this region's nucleotide sequence