Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3657 and Psest_3658 are separated by 49 nucleotides Psest_3658 and Psest_3659 are separated by 148 nucleotides Psest_3659 and Psest_3660 overlap by 4 nucleotides
Psest_3657: Psest_3657 - Spermidine/putrescine-binding periplasmic protein, at 3,818,233 to 3,819,264
_3657
Psest_3658: Psest_3658 - spermidine/putrescine ABC transporter ATP-binding subunit, at 3,819,314 to 3,820,423
_3658
Psest_3659: Psest_3659 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 3,820,572 to 3,821,201
_3659
Psest_3660: Psest_3660 - PAS domain S-box, at 3,821,198 to 3,823,615
_3660
Position (kb)
3819
3820
3821 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3818.516 kb on + strand, within Psest_3657 at 3818.517 kb on - strand, within Psest_3657 at 3818.521 kb on - strand, within Psest_3657 at 3818.582 kb on + strand, within Psest_3657 at 3818.582 kb on + strand, within Psest_3657 at 3818.723 kb on + strand, within Psest_3657 at 3818.723 kb on + strand, within Psest_3657 at 3818.723 kb on + strand, within Psest_3657 at 3818.723 kb on + strand, within Psest_3657 at 3818.723 kb on + strand, within Psest_3657 at 3818.723 kb on + strand, within Psest_3657 at 3818.724 kb on - strand, within Psest_3657 at 3818.724 kb on - strand, within Psest_3657 at 3818.724 kb on - strand, within Psest_3657 at 3818.724 kb on - strand, within Psest_3657 at 3818.724 kb on - strand, within Psest_3657 at 3818.774 kb on + strand, within Psest_3657 at 3818.774 kb on + strand, within Psest_3657 at 3818.775 kb on - strand, within Psest_3657 at 3818.775 kb on - strand, within Psest_3657 at 3818.873 kb on + strand, within Psest_3657 at 3818.873 kb on + strand, within Psest_3657 at 3819.089 kb on + strand, within Psest_3657 at 3819.089 kb on + strand, within Psest_3657 at 3819.089 kb on + strand, within Psest_3657 at 3819.089 kb on + strand, within Psest_3657 at 3819.089 kb on + strand, within Psest_3657 at 3819.089 kb on + strand, within Psest_3657 at 3819.089 kb on + strand, within Psest_3657 at 3819.090 kb on - strand, within Psest_3657 at 3819.090 kb on - strand, within Psest_3657 at 3819.090 kb on - strand, within Psest_3657 at 3819.137 kb on + strand, within Psest_3657 at 3819.137 kb on + strand, within Psest_3657 at 3819.138 kb on - strand, within Psest_3657 at 3819.254 kb on + strand at 3819.254 kb on + strand at 3819.254 kb on + strand at 3819.254 kb on + strand at 3819.254 kb on + strand at 3819.255 kb on - strand at 3819.264 kb on + strand at 3819.264 kb on + strand at 3819.264 kb on + strand at 3819.264 kb on + strand at 3819.303 kb on + strand at 3819.303 kb on + strand at 3819.304 kb on - strand at 3819.304 kb on - strand at 3819.304 kb on - strand at 3819.304 kb on - strand at 3819.480 kb on + strand, within Psest_3658 at 3819.480 kb on + strand, within Psest_3658 at 3819.649 kb on + strand, within Psest_3658 at 3819.649 kb on + strand, within Psest_3658 at 3819.735 kb on + strand, within Psest_3658 at 3819.834 kb on + strand, within Psest_3658 at 3819.834 kb on + strand, within Psest_3658 at 3819.834 kb on + strand, within Psest_3658 at 3819.834 kb on + strand, within Psest_3658 at 3819.834 kb on + strand, within Psest_3658 at 3819.834 kb on + strand, within Psest_3658 at 3819.835 kb on - strand, within Psest_3658 at 3819.835 kb on - strand, within Psest_3658 at 3819.835 kb on - strand, within Psest_3658 at 3819.835 kb on - strand, within Psest_3658 at 3819.835 kb on - strand, within Psest_3658 at 3820.142 kb on + strand, within Psest_3658 at 3820.143 kb on - strand, within Psest_3658 at 3820.149 kb on + strand, within Psest_3658 at 3820.149 kb on + strand, within Psest_3658 at 3820.149 kb on + strand, within Psest_3658 at 3820.150 kb on - strand, within Psest_3658 at 3820.150 kb on - strand, within Psest_3658 at 3820.150 kb on - strand, within Psest_3658 at 3820.150 kb on - strand, within Psest_3658 at 3820.150 kb on - strand, within Psest_3658 at 3820.365 kb on + strand at 3820.365 kb on + strand at 3820.365 kb on + strand at 3820.365 kb on + strand at 3820.366 kb on - strand at 3820.366 kb on - strand at 3820.366 kb on - strand at 3820.366 kb on - strand at 3820.366 kb on - strand at 3820.366 kb on - strand at 3820.366 kb on - strand at 3820.366 kb on - strand at 3820.366 kb on - strand at 3820.464 kb on + strand at 3820.464 kb on + strand at 3820.464 kb on + strand at 3820.464 kb on + strand at 3820.464 kb on + strand at 3820.465 kb on - strand at 3820.465 kb on - strand at 3820.465 kb on - strand at 3820.465 kb on - strand at 3820.465 kb on - strand at 3820.493 kb on + strand at 3820.597 kb on + strand at 3820.742 kb on - strand, within Psest_3659 at 3820.832 kb on - strand, within Psest_3659 at 3820.832 kb on - strand, within Psest_3659 at 3821.040 kb on - strand, within Psest_3659 at 3821.040 kb on - strand, within Psest_3659 at 3821.040 kb on - strand, within Psest_3659 at 3821.040 kb on - strand, within Psest_3659 at 3821.420 kb on + strand at 3821.420 kb on + strand at 3821.420 kb on + strand at 3821.420 kb on + strand at 3821.420 kb on + strand at 3821.420 kb on + strand at 3821.420 kb on + strand at 3821.420 kb on + strand at 3821.421 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 3,818,516 + Psest_3657 0.27 -0.3 3,818,517 - Psest_3657 0.28 -1.9 3,818,521 - Psest_3657 0.28 -1.2 3,818,582 + Psest_3657 0.34 -0.8 3,818,582 + Psest_3657 0.34 -1.5 3,818,723 + Psest_3657 0.47 -1.6 3,818,723 + Psest_3657 0.47 -0.1 3,818,723 + Psest_3657 0.47 +0.9 3,818,723 + Psest_3657 0.47 -1.0 3,818,723 + Psest_3657 0.47 -0.4 3,818,723 + Psest_3657 0.47 +1.1 3,818,724 - Psest_3657 0.48 -1.9 3,818,724 - Psest_3657 0.48 +1.4 3,818,724 - Psest_3657 0.48 -0.2 3,818,724 - Psest_3657 0.48 +0.4 3,818,724 - Psest_3657 0.48 -1.3 3,818,774 + Psest_3657 0.52 +0.4 3,818,774 + Psest_3657 0.52 -1.6 3,818,775 - Psest_3657 0.53 +2.6 3,818,775 - Psest_3657 0.53 +0.8 3,818,873 + Psest_3657 0.62 -0.5 3,818,873 + Psest_3657 0.62 -0.2 3,819,089 + Psest_3657 0.83 +0.5 3,819,089 + Psest_3657 0.83 -1.2 3,819,089 + Psest_3657 0.83 -0.5 3,819,089 + Psest_3657 0.83 -0.7 3,819,089 + Psest_3657 0.83 -0.2 3,819,089 + Psest_3657 0.83 +0.3 3,819,089 + Psest_3657 0.83 +0.1 3,819,090 - Psest_3657 0.83 -0.2 3,819,090 - Psest_3657 0.83 +0.2 3,819,090 - Psest_3657 0.83 +1.6 3,819,137 + Psest_3657 0.88 +0.2 3,819,137 + Psest_3657 0.88 -0.2 3,819,138 - Psest_3657 0.88 +0.3 3,819,254 + +0.5 3,819,254 + +0.2 3,819,254 + -0.2 3,819,254 + +0.5 3,819,254 + +0.1 3,819,255 - -2.6 3,819,264 + -0.5 3,819,264 + -0.9 3,819,264 + +0.1 3,819,264 + -0.3 3,819,303 + +1.0 3,819,303 + +0.5 3,819,304 - -0.9 3,819,304 - +0.7 3,819,304 - -1.9 3,819,304 - +0.6 3,819,480 + Psest_3658 0.15 +0.3 3,819,480 + Psest_3658 0.15 +0.1 3,819,649 + Psest_3658 0.30 +0.6 3,819,649 + Psest_3658 0.30 +0.5 3,819,735 + Psest_3658 0.38 -0.1 3,819,834 + Psest_3658 0.47 +2.3 3,819,834 + Psest_3658 0.47 +0.6 3,819,834 + Psest_3658 0.47 -0.7 3,819,834 + Psest_3658 0.47 -0.3 3,819,834 + Psest_3658 0.47 -2.1 3,819,834 + Psest_3658 0.47 -1.1 3,819,835 - Psest_3658 0.47 -2.1 3,819,835 - Psest_3658 0.47 -0.8 3,819,835 - Psest_3658 0.47 -0.3 3,819,835 - Psest_3658 0.47 -0.3 3,819,835 - Psest_3658 0.47 -0.5 3,820,142 + Psest_3658 0.75 +0.1 3,820,143 - Psest_3658 0.75 +2.9 3,820,149 + Psest_3658 0.75 -2.4 3,820,149 + Psest_3658 0.75 +2.3 3,820,149 + Psest_3658 0.75 +0.8 3,820,150 - Psest_3658 0.75 -0.0 3,820,150 - Psest_3658 0.75 +1.9 3,820,150 - Psest_3658 0.75 +0.4 3,820,150 - Psest_3658 0.75 +2.9 3,820,150 - Psest_3658 0.75 -0.4 3,820,365 + -0.5 3,820,365 + +0.0 3,820,365 + -1.1 3,820,365 + +0.4 3,820,366 - -1.2 3,820,366 - -2.1 3,820,366 - -0.8 3,820,366 - -2.2 3,820,366 - +0.5 3,820,366 - +0.2 3,820,366 - +0.4 3,820,366 - -0.8 3,820,366 - -0.7 3,820,464 + -0.3 3,820,464 + +1.0 3,820,464 + +1.9 3,820,464 + -1.4 3,820,464 + -0.5 3,820,465 - -0.6 3,820,465 - -1.7 3,820,465 - -0.6 3,820,465 - -1.3 3,820,465 - -1.2 3,820,493 + +1.3 3,820,597 + -2.0 3,820,742 - Psest_3659 0.27 -1.1 3,820,832 - Psest_3659 0.41 -0.3 3,820,832 - Psest_3659 0.41 -0.1 3,821,040 - Psest_3659 0.74 +1.0 3,821,040 - Psest_3659 0.74 -0.0 3,821,040 - Psest_3659 0.74 +1.3 3,821,040 - Psest_3659 0.74 +1.0 3,821,420 + +2.9 3,821,420 + +1.0 3,821,420 + +0.5 3,821,420 + +1.3 3,821,420 + +0.6 3,821,420 + +0.2 3,821,420 + +0.0 3,821,420 + +1.1 3,821,421 - +1.2
Or see this region's nucleotide sequence