Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3510 and Psest_3511 are separated by 81 nucleotides Psest_3511 and Psest_3512 overlap by 11 nucleotides Psest_3512 and Psest_3513 overlap by 1 nucleotides
Psest_3510: Psest_3510 - Na+-dependent transporters of the SNF family, at 3,685,463 to 3,686,923
_3510
Psest_3511: Psest_3511 - Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) , at 3,687,005 to 3,687,664
_3511
Psest_3512: Psest_3512 - fumarylacetoacetate (FAA) hydrolase (EC 3.7.1.2) (from data) , at 3,687,654 to 3,688,637
_3512
Psest_3513: Psest_3513 - Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (from data) , at 3,688,637 to 3,689,776
_3513
Position (kb)
3687
3688 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3686.187 kb on + strand, within Psest_3510 at 3686.187 kb on + strand, within Psest_3510 at 3686.187 kb on + strand, within Psest_3510 at 3686.187 kb on + strand, within Psest_3510 at 3686.187 kb on + strand, within Psest_3510 at 3686.187 kb on + strand, within Psest_3510 at 3686.188 kb on - strand, within Psest_3510 at 3686.188 kb on - strand, within Psest_3510 at 3686.188 kb on - strand, within Psest_3510 at 3686.188 kb on - strand, within Psest_3510 at 3686.188 kb on - strand, within Psest_3510 at 3686.188 kb on - strand, within Psest_3510 at 3686.188 kb on - strand, within Psest_3510 at 3686.188 kb on - strand, within Psest_3510 at 3686.196 kb on + strand, within Psest_3510 at 3686.196 kb on + strand, within Psest_3510 at 3686.595 kb on + strand at 3686.595 kb on + strand, within Psest_3510 at 3686.595 kb on + strand, within Psest_3510 at 3686.595 kb on + strand, within Psest_3510 at 3686.595 kb on + strand, within Psest_3510 at 3686.595 kb on + strand, within Psest_3510 at 3686.595 kb on + strand, within Psest_3510 at 3686.595 kb on + strand, within Psest_3510 at 3686.595 kb on + strand, within Psest_3510 at 3686.595 kb on + strand, within Psest_3510 at 3686.596 kb on - strand, within Psest_3510 at 3686.596 kb on - strand, within Psest_3510 at 3686.596 kb on - strand, within Psest_3510 at 3686.596 kb on - strand, within Psest_3510 at 3686.596 kb on - strand, within Psest_3510 at 3686.596 kb on - strand, within Psest_3510 at 3686.596 kb on - strand, within Psest_3510 at 3686.596 kb on - strand, within Psest_3510 at 3686.596 kb on - strand, within Psest_3510 at 3686.596 kb on - strand, within Psest_3510 at 3686.596 kb on - strand, within Psest_3510 at 3686.596 kb on - strand, within Psest_3510 at 3686.778 kb on + strand at 3686.778 kb on + strand at 3686.779 kb on - strand at 3686.786 kb on + strand at 3686.786 kb on + strand at 3686.786 kb on + strand at 3686.787 kb on - strand at 3686.787 kb on - strand at 3686.820 kb on + strand at 3686.820 kb on + strand at 3686.821 kb on - strand at 3686.821 kb on - strand at 3686.821 kb on - strand at 3686.923 kb on + strand at 3686.923 kb on + strand at 3686.923 kb on + strand at 3686.923 kb on + strand at 3686.923 kb on + strand at 3686.923 kb on + strand at 3686.924 kb on - strand at 3686.924 kb on - strand at 3686.924 kb on - strand at 3687.129 kb on + strand, within Psest_3511 at 3687.129 kb on + strand, within Psest_3511 at 3687.129 kb on + strand, within Psest_3511 at 3687.129 kb on + strand, within Psest_3511 at 3687.129 kb on + strand, within Psest_3511 at 3687.129 kb on + strand, within Psest_3511 at 3687.129 kb on + strand, within Psest_3511 at 3687.129 kb on + strand, within Psest_3511 at 3687.129 kb on + strand, within Psest_3511 at 3687.129 kb on + strand, within Psest_3511 at 3687.129 kb on + strand, within Psest_3511 at 3687.129 kb on + strand, within Psest_3511 at 3687.129 kb on + strand, within Psest_3511 at 3687.129 kb on + strand, within Psest_3511 at 3687.129 kb on + strand, within Psest_3511 at 3687.130 kb on - strand, within Psest_3511 at 3687.130 kb on - strand, within Psest_3511 at 3687.130 kb on - strand, within Psest_3511 at 3687.130 kb on - strand, within Psest_3511 at 3687.131 kb on + strand, within Psest_3511 at 3687.132 kb on - strand, within Psest_3511 at 3687.297 kb on + strand, within Psest_3511 at 3687.297 kb on + strand, within Psest_3511 at 3687.664 kb on + strand at 3687.835 kb on + strand, within Psest_3512 at 3687.835 kb on + strand, within Psest_3512 at 3687.835 kb on + strand, within Psest_3512 at 3688.020 kb on + strand, within Psest_3512 at 3688.020 kb on + strand, within Psest_3512 at 3688.075 kb on + strand, within Psest_3512 at 3688.075 kb on + strand, within Psest_3512 at 3688.300 kb on + strand, within Psest_3512 at 3688.300 kb on + strand, within Psest_3512 at 3688.300 kb on + strand, within Psest_3512 at 3688.300 kb on + strand, within Psest_3512 at 3688.300 kb on + strand, within Psest_3512 at 3688.301 kb on - strand, within Psest_3512 at 3688.378 kb on + strand, within Psest_3512 at 3688.379 kb on - strand, within Psest_3512 at 3688.379 kb on - strand, within Psest_3512 at 3688.379 kb on - strand, within Psest_3512 at 3688.403 kb on - strand, within Psest_3512 at 3688.510 kb on + strand, within Psest_3512 at 3688.510 kb on + strand, within Psest_3512 at 3688.510 kb on + strand, within Psest_3512 at 3688.511 kb on - strand, within Psest_3512 at 3688.511 kb on - strand, within Psest_3512
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 3,686,187 + Psest_3510 0.50 -0.9 3,686,187 + Psest_3510 0.50 -2.7 3,686,187 + Psest_3510 0.50 -0.7 3,686,187 + Psest_3510 0.50 -0.4 3,686,187 + Psest_3510 0.50 -1.9 3,686,187 + Psest_3510 0.50 -1.1 3,686,188 - Psest_3510 0.50 +0.4 3,686,188 - Psest_3510 0.50 -0.9 3,686,188 - Psest_3510 0.50 -0.4 3,686,188 - Psest_3510 0.50 -1.9 3,686,188 - Psest_3510 0.50 +1.3 3,686,188 - Psest_3510 0.50 -2.0 3,686,188 - Psest_3510 0.50 -1.5 3,686,188 - Psest_3510 0.50 +0.2 3,686,196 + Psest_3510 0.50 -1.3 3,686,196 + Psest_3510 0.50 -1.6 3,686,595 + +2.9 3,686,595 + Psest_3510 0.77 +0.6 3,686,595 + Psest_3510 0.77 -0.3 3,686,595 + Psest_3510 0.77 -0.6 3,686,595 + Psest_3510 0.77 -1.6 3,686,595 + Psest_3510 0.77 +0.0 3,686,595 + Psest_3510 0.77 -1.1 3,686,595 + Psest_3510 0.77 -0.7 3,686,595 + Psest_3510 0.77 -0.8 3,686,595 + Psest_3510 0.77 +1.9 3,686,596 - Psest_3510 0.78 +0.6 3,686,596 - Psest_3510 0.78 +1.3 3,686,596 - Psest_3510 0.78 +1.6 3,686,596 - Psest_3510 0.78 +0.5 3,686,596 - Psest_3510 0.78 +0.5 3,686,596 - Psest_3510 0.78 +0.0 3,686,596 - Psest_3510 0.78 +0.2 3,686,596 - Psest_3510 0.78 -1.8 3,686,596 - Psest_3510 0.78 +0.7 3,686,596 - Psest_3510 0.78 +0.9 3,686,596 - Psest_3510 0.78 +0.6 3,686,596 - Psest_3510 0.78 -0.1 3,686,778 + -2.0 3,686,778 + +0.4 3,686,779 - +2.0 3,686,786 + -1.8 3,686,786 + +0.1 3,686,786 + -0.2 3,686,787 - -1.8 3,686,787 - -0.4 3,686,820 + -1.3 3,686,820 + -2.9 3,686,821 - +0.4 3,686,821 - +0.1 3,686,821 - -2.2 3,686,923 + +0.6 3,686,923 + +0.4 3,686,923 + +0.3 3,686,923 + +0.8 3,686,923 + -0.1 3,686,923 + -0.2 3,686,924 - -1.9 3,686,924 - +0.3 3,686,924 - -2.7 3,687,129 + Psest_3511 0.19 +0.5 3,687,129 + Psest_3511 0.19 +0.7 3,687,129 + Psest_3511 0.19 -0.6 3,687,129 + Psest_3511 0.19 -1.6 3,687,129 + Psest_3511 0.19 -0.8 3,687,129 + Psest_3511 0.19 -0.5 3,687,129 + Psest_3511 0.19 +1.3 3,687,129 + Psest_3511 0.19 +0.1 3,687,129 + Psest_3511 0.19 -1.3 3,687,129 + Psest_3511 0.19 +0.7 3,687,129 + Psest_3511 0.19 -0.9 3,687,129 + Psest_3511 0.19 +0.2 3,687,129 + Psest_3511 0.19 -2.3 3,687,129 + Psest_3511 0.19 -0.5 3,687,129 + Psest_3511 0.19 +0.3 3,687,130 - Psest_3511 0.19 -1.6 3,687,130 - Psest_3511 0.19 +0.1 3,687,130 - Psest_3511 0.19 -0.7 3,687,130 - Psest_3511 0.19 -0.8 3,687,131 + Psest_3511 0.19 +0.3 3,687,132 - Psest_3511 0.19 -2.6 3,687,297 + Psest_3511 0.44 -0.0 3,687,297 + Psest_3511 0.44 +0.3 3,687,664 + +0.1 3,687,835 + Psest_3512 0.18 +0.7 3,687,835 + Psest_3512 0.18 -2.0 3,687,835 + Psest_3512 0.18 -1.4 3,688,020 + Psest_3512 0.37 +0.9 3,688,020 + Psest_3512 0.37 -0.3 3,688,075 + Psest_3512 0.43 +0.3 3,688,075 + Psest_3512 0.43 +0.1 3,688,300 + Psest_3512 0.66 -1.3 3,688,300 + Psest_3512 0.66 -0.1 3,688,300 + Psest_3512 0.66 -0.6 3,688,300 + Psest_3512 0.66 -0.3 3,688,300 + Psest_3512 0.66 +0.7 3,688,301 - Psest_3512 0.66 +0.0 3,688,378 + Psest_3512 0.74 -0.2 3,688,379 - Psest_3512 0.74 +0.1 3,688,379 - Psest_3512 0.74 +0.9 3,688,379 - Psest_3512 0.74 +0.7 3,688,403 - Psest_3512 0.76 -0.1 3,688,510 + Psest_3512 0.87 -1.8 3,688,510 + Psest_3512 0.87 -0.2 3,688,510 + Psest_3512 0.87 -0.2 3,688,511 - Psest_3512 0.87 +1.4 3,688,511 - Psest_3512 0.87 -0.7
Or see this region's nucleotide sequence