Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3511

Experiment: Def Carbenicillin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3510 and Psest_3511 are separated by 81 nucleotidesPsest_3511 and Psest_3512 overlap by 11 nucleotidesPsest_3512 and Psest_3513 overlap by 1 nucleotides Psest_3510: Psest_3510 - Na+-dependent transporters of the SNF family, at 3,685,463 to 3,686,923 _3510 Psest_3511: Psest_3511 - Maleylacetoacetate isomerase (EC 5.2.1.2) (from data), at 3,687,005 to 3,687,664 _3511 Psest_3512: Psest_3512 - fumarylacetoacetate (FAA) hydrolase (EC 3.7.1.2) (from data), at 3,687,654 to 3,688,637 _3512 Psest_3513: Psest_3513 - Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (from data), at 3,688,637 to 3,689,776 _3513 Position (kb) 3687 3688Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3686.187 kb on + strand, within Psest_3510at 3686.187 kb on + strand, within Psest_3510at 3686.187 kb on + strand, within Psest_3510at 3686.187 kb on + strand, within Psest_3510at 3686.187 kb on + strand, within Psest_3510at 3686.187 kb on + strand, within Psest_3510at 3686.188 kb on - strand, within Psest_3510at 3686.188 kb on - strand, within Psest_3510at 3686.188 kb on - strand, within Psest_3510at 3686.188 kb on - strand, within Psest_3510at 3686.188 kb on - strand, within Psest_3510at 3686.188 kb on - strand, within Psest_3510at 3686.188 kb on - strand, within Psest_3510at 3686.188 kb on - strand, within Psest_3510at 3686.196 kb on + strand, within Psest_3510at 3686.196 kb on + strand, within Psest_3510at 3686.595 kb on + strandat 3686.595 kb on + strand, within Psest_3510at 3686.595 kb on + strand, within Psest_3510at 3686.595 kb on + strand, within Psest_3510at 3686.595 kb on + strand, within Psest_3510at 3686.595 kb on + strand, within Psest_3510at 3686.595 kb on + strand, within Psest_3510at 3686.595 kb on + strand, within Psest_3510at 3686.595 kb on + strand, within Psest_3510at 3686.595 kb on + strand, within Psest_3510at 3686.596 kb on - strand, within Psest_3510at 3686.596 kb on - strand, within Psest_3510at 3686.596 kb on - strand, within Psest_3510at 3686.596 kb on - strand, within Psest_3510at 3686.596 kb on - strand, within Psest_3510at 3686.596 kb on - strand, within Psest_3510at 3686.596 kb on - strand, within Psest_3510at 3686.596 kb on - strand, within Psest_3510at 3686.596 kb on - strand, within Psest_3510at 3686.596 kb on - strand, within Psest_3510at 3686.596 kb on - strand, within Psest_3510at 3686.596 kb on - strand, within Psest_3510at 3686.778 kb on + strandat 3686.778 kb on + strandat 3686.779 kb on - strandat 3686.786 kb on + strandat 3686.786 kb on + strandat 3686.786 kb on + strandat 3686.787 kb on - strandat 3686.787 kb on - strandat 3686.820 kb on + strandat 3686.820 kb on + strandat 3686.821 kb on - strandat 3686.821 kb on - strandat 3686.821 kb on - strandat 3686.923 kb on + strandat 3686.923 kb on + strandat 3686.923 kb on + strandat 3686.923 kb on + strandat 3686.923 kb on + strandat 3686.923 kb on + strandat 3686.924 kb on - strandat 3686.924 kb on - strandat 3686.924 kb on - strandat 3687.129 kb on + strand, within Psest_3511at 3687.129 kb on + strand, within Psest_3511at 3687.129 kb on + strand, within Psest_3511at 3687.129 kb on + strand, within Psest_3511at 3687.129 kb on + strand, within Psest_3511at 3687.129 kb on + strand, within Psest_3511at 3687.129 kb on + strand, within Psest_3511at 3687.129 kb on + strand, within Psest_3511at 3687.129 kb on + strand, within Psest_3511at 3687.129 kb on + strand, within Psest_3511at 3687.129 kb on + strand, within Psest_3511at 3687.129 kb on + strand, within Psest_3511at 3687.129 kb on + strand, within Psest_3511at 3687.129 kb on + strand, within Psest_3511at 3687.129 kb on + strand, within Psest_3511at 3687.130 kb on - strand, within Psest_3511at 3687.130 kb on - strand, within Psest_3511at 3687.130 kb on - strand, within Psest_3511at 3687.130 kb on - strand, within Psest_3511at 3687.131 kb on + strand, within Psest_3511at 3687.132 kb on - strand, within Psest_3511at 3687.297 kb on + strand, within Psest_3511at 3687.297 kb on + strand, within Psest_3511at 3687.664 kb on + strandat 3687.835 kb on + strand, within Psest_3512at 3687.835 kb on + strand, within Psest_3512at 3687.835 kb on + strand, within Psest_3512at 3688.020 kb on + strand, within Psest_3512at 3688.020 kb on + strand, within Psest_3512at 3688.075 kb on + strand, within Psest_3512at 3688.075 kb on + strand, within Psest_3512at 3688.300 kb on + strand, within Psest_3512at 3688.300 kb on + strand, within Psest_3512at 3688.300 kb on + strand, within Psest_3512at 3688.300 kb on + strand, within Psest_3512at 3688.300 kb on + strand, within Psest_3512at 3688.301 kb on - strand, within Psest_3512at 3688.378 kb on + strand, within Psest_3512at 3688.379 kb on - strand, within Psest_3512at 3688.379 kb on - strand, within Psest_3512at 3688.379 kb on - strand, within Psest_3512at 3688.403 kb on - strand, within Psest_3512at 3688.510 kb on + strand, within Psest_3512at 3688.510 kb on + strand, within Psest_3512at 3688.510 kb on + strand, within Psest_3512at 3688.511 kb on - strand, within Psest_3512at 3688.511 kb on - strand, within Psest_3512

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml
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3,686,187 + Psest_3510 0.50 -0.9
3,686,187 + Psest_3510 0.50 -2.7
3,686,187 + Psest_3510 0.50 -0.7
3,686,187 + Psest_3510 0.50 -0.4
3,686,187 + Psest_3510 0.50 -1.9
3,686,187 + Psest_3510 0.50 -1.1
3,686,188 - Psest_3510 0.50 +0.4
3,686,188 - Psest_3510 0.50 -0.9
3,686,188 - Psest_3510 0.50 -0.4
3,686,188 - Psest_3510 0.50 -1.9
3,686,188 - Psest_3510 0.50 +1.3
3,686,188 - Psest_3510 0.50 -2.0
3,686,188 - Psest_3510 0.50 -1.5
3,686,188 - Psest_3510 0.50 +0.2
3,686,196 + Psest_3510 0.50 -1.3
3,686,196 + Psest_3510 0.50 -1.6
3,686,595 + +2.9
3,686,595 + Psest_3510 0.77 +0.6
3,686,595 + Psest_3510 0.77 -0.3
3,686,595 + Psest_3510 0.77 -0.6
3,686,595 + Psest_3510 0.77 -1.6
3,686,595 + Psest_3510 0.77 +0.0
3,686,595 + Psest_3510 0.77 -1.1
3,686,595 + Psest_3510 0.77 -0.7
3,686,595 + Psest_3510 0.77 -0.8
3,686,595 + Psest_3510 0.77 +1.9
3,686,596 - Psest_3510 0.78 +0.6
3,686,596 - Psest_3510 0.78 +1.3
3,686,596 - Psest_3510 0.78 +1.6
3,686,596 - Psest_3510 0.78 +0.5
3,686,596 - Psest_3510 0.78 +0.5
3,686,596 - Psest_3510 0.78 +0.0
3,686,596 - Psest_3510 0.78 +0.2
3,686,596 - Psest_3510 0.78 -1.8
3,686,596 - Psest_3510 0.78 +0.7
3,686,596 - Psest_3510 0.78 +0.9
3,686,596 - Psest_3510 0.78 +0.6
3,686,596 - Psest_3510 0.78 -0.1
3,686,778 + -2.0
3,686,778 + +0.4
3,686,779 - +2.0
3,686,786 + -1.8
3,686,786 + +0.1
3,686,786 + -0.2
3,686,787 - -1.8
3,686,787 - -0.4
3,686,820 + -1.3
3,686,820 + -2.9
3,686,821 - +0.4
3,686,821 - +0.1
3,686,821 - -2.2
3,686,923 + +0.6
3,686,923 + +0.4
3,686,923 + +0.3
3,686,923 + +0.8
3,686,923 + -0.1
3,686,923 + -0.2
3,686,924 - -1.9
3,686,924 - +0.3
3,686,924 - -2.7
3,687,129 + Psest_3511 0.19 +0.5
3,687,129 + Psest_3511 0.19 +0.7
3,687,129 + Psest_3511 0.19 -0.6
3,687,129 + Psest_3511 0.19 -1.6
3,687,129 + Psest_3511 0.19 -0.8
3,687,129 + Psest_3511 0.19 -0.5
3,687,129 + Psest_3511 0.19 +1.3
3,687,129 + Psest_3511 0.19 +0.1
3,687,129 + Psest_3511 0.19 -1.3
3,687,129 + Psest_3511 0.19 +0.7
3,687,129 + Psest_3511 0.19 -0.9
3,687,129 + Psest_3511 0.19 +0.2
3,687,129 + Psest_3511 0.19 -2.3
3,687,129 + Psest_3511 0.19 -0.5
3,687,129 + Psest_3511 0.19 +0.3
3,687,130 - Psest_3511 0.19 -1.6
3,687,130 - Psest_3511 0.19 +0.1
3,687,130 - Psest_3511 0.19 -0.7
3,687,130 - Psest_3511 0.19 -0.8
3,687,131 + Psest_3511 0.19 +0.3
3,687,132 - Psest_3511 0.19 -2.6
3,687,297 + Psest_3511 0.44 -0.0
3,687,297 + Psest_3511 0.44 +0.3
3,687,664 + +0.1
3,687,835 + Psest_3512 0.18 +0.7
3,687,835 + Psest_3512 0.18 -2.0
3,687,835 + Psest_3512 0.18 -1.4
3,688,020 + Psest_3512 0.37 +0.9
3,688,020 + Psest_3512 0.37 -0.3
3,688,075 + Psest_3512 0.43 +0.3
3,688,075 + Psest_3512 0.43 +0.1
3,688,300 + Psest_3512 0.66 -1.3
3,688,300 + Psest_3512 0.66 -0.1
3,688,300 + Psest_3512 0.66 -0.6
3,688,300 + Psest_3512 0.66 -0.3
3,688,300 + Psest_3512 0.66 +0.7
3,688,301 - Psest_3512 0.66 +0.0
3,688,378 + Psest_3512 0.74 -0.2
3,688,379 - Psest_3512 0.74 +0.1
3,688,379 - Psest_3512 0.74 +0.9
3,688,379 - Psest_3512 0.74 +0.7
3,688,403 - Psest_3512 0.76 -0.1
3,688,510 + Psest_3512 0.87 -1.8
3,688,510 + Psest_3512 0.87 -0.2
3,688,510 + Psest_3512 0.87 -0.2
3,688,511 - Psest_3512 0.87 +1.4
3,688,511 - Psest_3512 0.87 -0.7

Or see this region's nucleotide sequence