Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3298 and Psest_3299 are separated by 169 nucleotides Psest_3299 and Psest_3300 are separated by 178 nucleotides
Psest_3298: Psest_3298 - histidinol dehydrogenase, at 3,465,393 to 3,466,703
_3298
Psest_3299: Psest_3299 - ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) , at 3,466,873 to 3,467,505
_3299
Psest_3300: Psest_3300 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 3,467,684 to 3,468,949
_3300
Position (kb)
3466
3467
3468 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3465.998 kb on + strand, within Psest_3298 at 3466.039 kb on + strand, within Psest_3298 at 3466.039 kb on + strand, within Psest_3298 at 3466.039 kb on + strand, within Psest_3298 at 3466.039 kb on + strand, within Psest_3298 at 3466.039 kb on + strand, within Psest_3298 at 3466.039 kb on + strand, within Psest_3298 at 3466.039 kb on + strand, within Psest_3298 at 3466.040 kb on - strand, within Psest_3298 at 3466.040 kb on - strand, within Psest_3298 at 3466.040 kb on - strand, within Psest_3298 at 3466.040 kb on - strand, within Psest_3298 at 3466.040 kb on - strand, within Psest_3298 at 3466.274 kb on - strand, within Psest_3298 at 3466.297 kb on + strand, within Psest_3298 at 3466.297 kb on + strand, within Psest_3298 at 3466.297 kb on + strand, within Psest_3298 at 3466.297 kb on + strand, within Psest_3298 at 3466.297 kb on + strand, within Psest_3298 at 3466.298 kb on - strand, within Psest_3298 at 3466.298 kb on - strand, within Psest_3298 at 3466.338 kb on + strand, within Psest_3298 at 3466.360 kb on + strand, within Psest_3298 at 3466.360 kb on + strand, within Psest_3298 at 3466.361 kb on - strand, within Psest_3298 at 3466.361 kb on - strand, within Psest_3298 at 3466.393 kb on + strand, within Psest_3298 at 3466.789 kb on + strand at 3466.790 kb on - strand at 3466.795 kb on - strand at 3466.832 kb on - strand at 3466.832 kb on - strand at 3466.832 kb on - strand at 3467.026 kb on - strand, within Psest_3299 at 3467.026 kb on - strand, within Psest_3299 at 3467.096 kb on + strand, within Psest_3299 at 3467.097 kb on - strand, within Psest_3299 at 3467.136 kb on - strand, within Psest_3299 at 3467.136 kb on - strand, within Psest_3299 at 3467.138 kb on + strand, within Psest_3299 at 3467.138 kb on + strand, within Psest_3299 at 3467.139 kb on - strand, within Psest_3299 at 3467.258 kb on + strand, within Psest_3299 at 3467.258 kb on + strand, within Psest_3299 at 3467.258 kb on + strand, within Psest_3299 at 3467.258 kb on + strand, within Psest_3299 at 3467.258 kb on + strand, within Psest_3299 at 3467.258 kb on + strand, within Psest_3299 at 3467.259 kb on - strand, within Psest_3299 at 3467.261 kb on - strand, within Psest_3299 at 3467.276 kb on + strand, within Psest_3299 at 3467.333 kb on + strand, within Psest_3299 at 3467.333 kb on + strand, within Psest_3299 at 3467.333 kb on + strand, within Psest_3299 at 3467.333 kb on + strand, within Psest_3299 at 3467.333 kb on + strand, within Psest_3299 at 3467.333 kb on + strand, within Psest_3299 at 3467.333 kb on + strand, within Psest_3299 at 3467.333 kb on + strand, within Psest_3299 at 3467.333 kb on + strand, within Psest_3299 at 3467.333 kb on + strand, within Psest_3299 at 3467.333 kb on + strand, within Psest_3299 at 3467.333 kb on + strand, within Psest_3299 at 3467.333 kb on + strand, within Psest_3299 at 3467.334 kb on - strand, within Psest_3299 at 3467.334 kb on - strand, within Psest_3299 at 3467.334 kb on - strand, within Psest_3299 at 3467.334 kb on - strand, within Psest_3299 at 3467.334 kb on - strand, within Psest_3299 at 3467.334 kb on - strand, within Psest_3299 at 3467.334 kb on - strand, within Psest_3299 at 3467.334 kb on - strand, within Psest_3299 at 3467.334 kb on - strand, within Psest_3299 at 3467.334 kb on - strand, within Psest_3299 at 3467.334 kb on - strand, within Psest_3299 at 3467.334 kb on - strand, within Psest_3299 at 3467.334 kb on - strand, within Psest_3299 at 3467.334 kb on - strand, within Psest_3299 at 3467.334 kb on - strand, within Psest_3299 at 3467.334 kb on - strand, within Psest_3299 at 3467.334 kb on - strand, within Psest_3299 at 3467.334 kb on - strand, within Psest_3299 at 3467.334 kb on - strand, within Psest_3299 at 3467.337 kb on + strand, within Psest_3299 at 3467.338 kb on - strand, within Psest_3299 at 3467.338 kb on - strand, within Psest_3299 at 3467.338 kb on - strand, within Psest_3299 at 3467.385 kb on + strand, within Psest_3299 at 3467.576 kb on + strand at 3467.576 kb on + strand at 3467.577 kb on - strand at 3467.616 kb on + strand at 3467.619 kb on + strand at 3467.619 kb on + strand at 3467.619 kb on + strand at 3467.626 kb on - strand at 3467.626 kb on - strand at 3467.626 kb on - strand at 3467.626 kb on - strand at 3467.626 kb on - strand at 3467.626 kb on - strand at 3467.626 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 3,465,998 + Psest_3298 0.46 -2.3 3,466,039 + Psest_3298 0.49 -3.2 3,466,039 + Psest_3298 0.49 -3.5 3,466,039 + Psest_3298 0.49 -1.9 3,466,039 + Psest_3298 0.49 -1.7 3,466,039 + Psest_3298 0.49 -1.4 3,466,039 + Psest_3298 0.49 -3.5 3,466,039 + Psest_3298 0.49 -4.2 3,466,040 - Psest_3298 0.49 -0.4 3,466,040 - Psest_3298 0.49 -0.2 3,466,040 - Psest_3298 0.49 -3.7 3,466,040 - Psest_3298 0.49 -3.2 3,466,040 - Psest_3298 0.49 -1.1 3,466,274 - Psest_3298 0.67 +0.1 3,466,297 + Psest_3298 0.69 -3.0 3,466,297 + Psest_3298 0.69 -4.0 3,466,297 + Psest_3298 0.69 -1.2 3,466,297 + Psest_3298 0.69 -2.4 3,466,297 + Psest_3298 0.69 -2.2 3,466,298 - Psest_3298 0.69 -2.0 3,466,298 - Psest_3298 0.69 -2.9 3,466,338 + Psest_3298 0.72 -2.6 3,466,360 + Psest_3298 0.74 -1.0 3,466,360 + Psest_3298 0.74 -3.1 3,466,361 - Psest_3298 0.74 -3.1 3,466,361 - Psest_3298 0.74 -4.2 3,466,393 + Psest_3298 0.76 -2.7 3,466,789 + -1.9 3,466,790 - -0.0 3,466,795 - -1.4 3,466,832 - +0.2 3,466,832 - +0.8 3,466,832 - +0.9 3,467,026 - Psest_3299 0.24 -0.5 3,467,026 - Psest_3299 0.24 -2.0 3,467,096 + Psest_3299 0.35 -0.4 3,467,097 - Psest_3299 0.35 -2.9 3,467,136 - Psest_3299 0.42 -2.3 3,467,136 - Psest_3299 0.42 -3.2 3,467,138 + Psest_3299 0.42 -1.8 3,467,138 + Psest_3299 0.42 -3.3 3,467,139 - Psest_3299 0.42 -0.6 3,467,258 + Psest_3299 0.61 -2.4 3,467,258 + Psest_3299 0.61 -2.1 3,467,258 + Psest_3299 0.61 -1.8 3,467,258 + Psest_3299 0.61 -2.8 3,467,258 + Psest_3299 0.61 -1.0 3,467,258 + Psest_3299 0.61 -3.3 3,467,259 - Psest_3299 0.61 -0.8 3,467,261 - Psest_3299 0.61 -3.9 3,467,276 + Psest_3299 0.64 -1.7 3,467,333 + Psest_3299 0.73 -4.3 3,467,333 + Psest_3299 0.73 -1.8 3,467,333 + Psest_3299 0.73 -2.0 3,467,333 + Psest_3299 0.73 -3.2 3,467,333 + Psest_3299 0.73 -0.5 3,467,333 + Psest_3299 0.73 -1.4 3,467,333 + Psest_3299 0.73 -1.4 3,467,333 + Psest_3299 0.73 -1.5 3,467,333 + Psest_3299 0.73 -2.5 3,467,333 + Psest_3299 0.73 -3.1 3,467,333 + Psest_3299 0.73 -2.1 3,467,333 + Psest_3299 0.73 -1.4 3,467,333 + Psest_3299 0.73 -4.7 3,467,334 - Psest_3299 0.73 -1.4 3,467,334 - Psest_3299 0.73 -1.4 3,467,334 - Psest_3299 0.73 -1.8 3,467,334 - Psest_3299 0.73 -0.2 3,467,334 - Psest_3299 0.73 -1.9 3,467,334 - Psest_3299 0.73 -2.7 3,467,334 - Psest_3299 0.73 -1.9 3,467,334 - Psest_3299 0.73 -3.0 3,467,334 - Psest_3299 0.73 -3.9 3,467,334 - Psest_3299 0.73 -0.5 3,467,334 - Psest_3299 0.73 -4.2 3,467,334 - Psest_3299 0.73 -3.4 3,467,334 - Psest_3299 0.73 -0.5 3,467,334 - Psest_3299 0.73 -2.9 3,467,334 - Psest_3299 0.73 -3.1 3,467,334 - Psest_3299 0.73 -2.2 3,467,334 - Psest_3299 0.73 -3.9 3,467,334 - Psest_3299 0.73 -2.3 3,467,334 - Psest_3299 0.73 -2.8 3,467,337 + Psest_3299 0.73 -0.6 3,467,338 - Psest_3299 0.73 -1.9 3,467,338 - Psest_3299 0.73 -4.3 3,467,338 - Psest_3299 0.73 -2.3 3,467,385 + Psest_3299 0.81 -3.3 3,467,576 + -1.5 3,467,576 + -3.0 3,467,577 - -0.1 3,467,616 + -2.2 3,467,619 + -3.9 3,467,619 + -1.5 3,467,619 + -3.2 3,467,626 - -1.8 3,467,626 - -1.4 3,467,626 - -0.3 3,467,626 - -1.2 3,467,626 - -1.1 3,467,626 - -1.5 3,467,626 - -1.1
Or see this region's nucleotide sequence