Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0316 and Psest_0317 are separated by 9 nucleotides Psest_0317 and Psest_0318 are separated by 60 nucleotides Psest_0318 and Psest_0319 are separated by 93 nucleotides
Psest_0316: Psest_0316 - Cytochrome c556, at 339,459 to 339,905
_0316
Psest_0317: Psest_0317 - Protein of unknown function (DUF1090)., at 339,915 to 340,295
_0317
Psest_0318: Psest_0318 - NAD-dependent DNA ligase (contains BRCT domain type II), at 340,356 to 342,020
_0318
Psest_0319: Psest_0319 - Predicted ferric reductase, at 342,114 to 343,445
_0319
Position (kb) 340
341
342
343 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 339.425 kb on - strand at 339.503 kb on - strand at 339.503 kb on - strand at 339.561 kb on + strand, within Psest_0316 at 339.562 kb on - strand, within Psest_0316 at 339.562 kb on - strand, within Psest_0316 at 339.562 kb on - strand, within Psest_0316 at 339.916 kb on + strand at 339.917 kb on - strand at 340.032 kb on + strand, within Psest_0317 at 340.055 kb on - strand, within Psest_0317 at 340.308 kb on + strand at 340.308 kb on + strand at 340.308 kb on + strand at 340.308 kb on + strand at 340.309 kb on - strand at 340.309 kb on - strand at 340.309 kb on - strand at 340.327 kb on - strand at 340.371 kb on - strand at 340.371 kb on - strand at 340.910 kb on + strand, within Psest_0318 at 340.910 kb on + strand, within Psest_0318 at 340.910 kb on + strand, within Psest_0318 at 340.910 kb on + strand, within Psest_0318 at 340.910 kb on + strand, within Psest_0318 at 340.910 kb on + strand, within Psest_0318 at 340.910 kb on + strand, within Psest_0318 at 340.910 kb on + strand, within Psest_0318 at 340.910 kb on + strand, within Psest_0318 at 340.910 kb on + strand, within Psest_0318 at 340.910 kb on + strand, within Psest_0318 at 340.910 kb on + strand, within Psest_0318 at 340.910 kb on + strand, within Psest_0318 at 340.910 kb on + strand, within Psest_0318 at 340.910 kb on + strand, within Psest_0318 at 340.911 kb on - strand, within Psest_0318 at 340.911 kb on - strand, within Psest_0318 at 340.911 kb on - strand, within Psest_0318 at 340.911 kb on - strand, within Psest_0318 at 340.911 kb on - strand, within Psest_0318 at 340.911 kb on - strand, within Psest_0318 at 340.911 kb on - strand, within Psest_0318 at 340.911 kb on - strand, within Psest_0318 at 340.974 kb on + strand, within Psest_0318 at 341.102 kb on + strand, within Psest_0318 at 341.102 kb on + strand, within Psest_0318 at 341.102 kb on + strand, within Psest_0318 at 341.103 kb on - strand, within Psest_0318 at 341.114 kb on - strand, within Psest_0318 at 341.114 kb on - strand, within Psest_0318 at 341.114 kb on - strand, within Psest_0318 at 341.229 kb on + strand, within Psest_0318 at 341.229 kb on + strand, within Psest_0318 at 341.229 kb on + strand, within Psest_0318 at 341.229 kb on + strand, within Psest_0318 at 341.598 kb on - strand, within Psest_0318 at 341.598 kb on - strand, within Psest_0318 at 341.884 kb on + strand at 341.885 kb on - strand at 341.885 kb on - strand at 342.122 kb on + strand at 342.122 kb on + strand at 342.122 kb on + strand at 342.123 kb on - strand at 342.297 kb on + strand, within Psest_0319 at 342.376 kb on + strand, within Psest_0319 at 342.377 kb on - strand, within Psest_0319 at 342.424 kb on - strand, within Psest_0319 at 342.569 kb on - strand, within Psest_0319 at 342.720 kb on - strand, within Psest_0319 at 342.897 kb on + strand, within Psest_0319 at 342.898 kb on - strand, within Psest_0319 at 342.898 kb on - strand, within Psest_0319 at 342.898 kb on - strand, within Psest_0319 at 342.898 kb on - strand, within Psest_0319 at 342.925 kb on + strand, within Psest_0319 at 342.925 kb on + strand, within Psest_0319 at 342.926 kb on - strand, within Psest_0319 at 342.926 kb on - strand, within Psest_0319 at 342.926 kb on - strand, within Psest_0319 at 343.016 kb on - strand, within Psest_0319
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 339,425 - -0.9 339,503 - +0.7 339,503 - -1.3 339,561 + Psest_0316 0.23 +1.1 339,562 - Psest_0316 0.23 -2.3 339,562 - Psest_0316 0.23 -0.9 339,562 - Psest_0316 0.23 -1.5 339,916 + +1.0 339,917 - +0.7 340,032 + Psest_0317 0.31 -0.4 340,055 - Psest_0317 0.37 +1.1 340,308 + +1.0 340,308 + +1.2 340,308 + +1.8 340,308 + +1.2 340,309 - -0.7 340,309 - +0.6 340,309 - +0.7 340,327 - +1.2 340,371 - -0.5 340,371 - -0.5 340,910 + Psest_0318 0.33 +2.2 340,910 + Psest_0318 0.33 +0.8 340,910 + Psest_0318 0.33 +2.7 340,910 + Psest_0318 0.33 +2.0 340,910 + Psest_0318 0.33 +1.0 340,910 + Psest_0318 0.33 +0.8 340,910 + Psest_0318 0.33 +2.2 340,910 + Psest_0318 0.33 +0.7 340,910 + Psest_0318 0.33 +3.2 340,910 + Psest_0318 0.33 +1.4 340,910 + Psest_0318 0.33 +2.6 340,910 + Psest_0318 0.33 +2.1 340,910 + Psest_0318 0.33 +0.6 340,910 + Psest_0318 0.33 +2.0 340,910 + Psest_0318 0.33 +1.2 340,911 - Psest_0318 0.33 -1.3 340,911 - Psest_0318 0.33 -1.0 340,911 - Psest_0318 0.33 +0.1 340,911 - Psest_0318 0.33 -0.2 340,911 - Psest_0318 0.33 +0.9 340,911 - Psest_0318 0.33 -0.9 340,911 - Psest_0318 0.33 -0.3 340,911 - Psest_0318 0.33 -1.2 340,974 + Psest_0318 0.37 +1.9 341,102 + Psest_0318 0.45 -0.1 341,102 + Psest_0318 0.45 +1.9 341,102 + Psest_0318 0.45 +0.4 341,103 - Psest_0318 0.45 +1.0 341,114 - Psest_0318 0.46 +1.4 341,114 - Psest_0318 0.46 +1.5 341,114 - Psest_0318 0.46 -1.2 341,229 + Psest_0318 0.52 +2.0 341,229 + Psest_0318 0.52 +0.4 341,229 + Psest_0318 0.52 -0.7 341,229 + Psest_0318 0.52 -0.2 341,598 - Psest_0318 0.75 +2.0 341,598 - Psest_0318 0.75 +0.1 341,884 + +0.2 341,885 - +0.5 341,885 - +1.1 342,122 + +1.8 342,122 + +2.1 342,122 + +1.9 342,123 - -1.4 342,297 + Psest_0319 0.14 +1.1 342,376 + Psest_0319 0.20 +0.3 342,377 - Psest_0319 0.20 +1.3 342,424 - Psest_0319 0.23 +1.3 342,569 - Psest_0319 0.34 -1.0 342,720 - Psest_0319 0.45 -0.1 342,897 + Psest_0319 0.59 -0.7 342,898 - Psest_0319 0.59 +1.7 342,898 - Psest_0319 0.59 +2.1 342,898 - Psest_0319 0.59 +1.3 342,898 - Psest_0319 0.59 +1.5 342,925 + Psest_0319 0.61 -1.9 342,925 + Psest_0319 0.61 -0.8 342,926 - Psest_0319 0.61 +1.6 342,926 - Psest_0319 0.61 -0.1 342,926 - Psest_0319 0.61 +1.0 343,016 - Psest_0319 0.68 +1.2
Or see this region's nucleotide sequence