Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3101 and Psest_3102 overlap by 32 nucleotides Psest_3102 and Psest_3103 overlap by 17 nucleotides Psest_3103 and Psest_3104 are separated by 148 nucleotides
Psest_3101: Psest_3101 - L-aspartate oxidase, at 3,279,365 to 3,280,981
_3101
Psest_3102: Psest_3102 - hypothetical protein, at 3,280,950 to 3,281,405
_3102
Psest_3103: Psest_3103 - Uncharacterized conserved protein, at 3,281,389 to 3,281,643
_3103
Psest_3104: Psest_3104 - folate-binding protein YgfZ, at 3,281,792 to 3,282,739
_3104
Position (kb)
3280
3281
3282 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3279.996 kb on - strand, within Psest_3101 at 3279.996 kb on - strand, within Psest_3101 at 3279.996 kb on - strand, within Psest_3101 at 3280.110 kb on - strand, within Psest_3101 at 3280.292 kb on + strand, within Psest_3101 at 3280.350 kb on - strand, within Psest_3101 at 3280.350 kb on - strand, within Psest_3101 at 3280.368 kb on - strand, within Psest_3101 at 3280.368 kb on - strand, within Psest_3101 at 3280.418 kb on + strand, within Psest_3101 at 3280.419 kb on - strand, within Psest_3101 at 3280.419 kb on - strand, within Psest_3101 at 3280.419 kb on - strand, within Psest_3101 at 3280.419 kb on - strand, within Psest_3101 at 3280.475 kb on + strand, within Psest_3101 at 3280.476 kb on - strand, within Psest_3101 at 3280.476 kb on - strand, within Psest_3101 at 3280.604 kb on - strand, within Psest_3101 at 3280.713 kb on - strand, within Psest_3101 at 3280.713 kb on - strand, within Psest_3101 at 3280.713 kb on - strand, within Psest_3101 at 3280.713 kb on - strand, within Psest_3101 at 3280.713 kb on - strand, within Psest_3101 at 3280.713 kb on - strand, within Psest_3101 at 3280.713 kb on - strand, within Psest_3101 at 3280.797 kb on - strand, within Psest_3101 at 3280.797 kb on - strand, within Psest_3101 at 3280.797 kb on - strand, within Psest_3101 at 3280.805 kb on + strand, within Psest_3101 at 3280.805 kb on + strand, within Psest_3101 at 3280.806 kb on - strand, within Psest_3101 at 3280.806 kb on - strand, within Psest_3101 at 3280.806 kb on - strand, within Psest_3101 at 3280.806 kb on - strand, within Psest_3101 at 3280.806 kb on - strand, within Psest_3101 at 3280.806 kb on - strand, within Psest_3101 at 3280.806 kb on - strand, within Psest_3101 at 3280.806 kb on - strand, within Psest_3101 at 3280.806 kb on - strand, within Psest_3101 at 3280.806 kb on - strand, within Psest_3101 at 3280.806 kb on - strand, within Psest_3101 at 3280.806 kb on - strand, within Psest_3101 at 3280.806 kb on - strand, within Psest_3101 at 3280.908 kb on - strand at 3280.908 kb on - strand at 3280.952 kb on - strand at 3281.045 kb on + strand, within Psest_3102 at 3281.045 kb on + strand, within Psest_3102 at 3281.045 kb on + strand, within Psest_3102 at 3281.045 kb on + strand, within Psest_3102 at 3281.046 kb on - strand, within Psest_3102 at 3281.046 kb on - strand, within Psest_3102 at 3281.302 kb on + strand, within Psest_3102 at 3281.302 kb on + strand, within Psest_3102 at 3281.303 kb on - strand, within Psest_3102 at 3281.303 kb on - strand, within Psest_3102 at 3281.338 kb on + strand, within Psest_3102 at 3281.338 kb on + strand, within Psest_3102 at 3281.339 kb on - strand, within Psest_3102 at 3281.339 kb on - strand, within Psest_3102 at 3281.339 kb on - strand, within Psest_3102 at 3281.339 kb on - strand, within Psest_3102 at 3281.339 kb on - strand, within Psest_3102 at 3281.339 kb on - strand, within Psest_3102 at 3281.391 kb on - strand at 3281.644 kb on - strand at 3281.644 kb on - strand at 3281.644 kb on - strand at 3281.673 kb on + strand at 3281.673 kb on + strand at 3281.673 kb on + strand at 3281.673 kb on + strand at 3281.673 kb on + strand at 3281.673 kb on + strand at 3281.674 kb on - strand at 3281.674 kb on - strand at 3281.675 kb on + strand at 3281.675 kb on + strand at 3281.676 kb on - strand at 3281.676 kb on - strand at 3281.756 kb on + strand at 3281.756 kb on + strand at 3281.756 kb on + strand at 3281.756 kb on + strand at 3281.756 kb on + strand at 3281.757 kb on - strand at 3281.757 kb on - strand at 3281.757 kb on - strand at 3281.807 kb on + strand at 3281.807 kb on + strand at 3281.807 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 3,279,996 - Psest_3101 0.39 +0.4 3,279,996 - Psest_3101 0.39 -0.4 3,279,996 - Psest_3101 0.39 +0.2 3,280,110 - Psest_3101 0.46 -0.2 3,280,292 + Psest_3101 0.57 -2.3 3,280,350 - Psest_3101 0.61 +0.4 3,280,350 - Psest_3101 0.61 +0.0 3,280,368 - Psest_3101 0.62 -0.8 3,280,368 - Psest_3101 0.62 -0.4 3,280,418 + Psest_3101 0.65 -1.0 3,280,419 - Psest_3101 0.65 +0.2 3,280,419 - Psest_3101 0.65 +1.7 3,280,419 - Psest_3101 0.65 -0.5 3,280,419 - Psest_3101 0.65 +0.8 3,280,475 + Psest_3101 0.69 +1.4 3,280,476 - Psest_3101 0.69 +0.3 3,280,476 - Psest_3101 0.69 -0.5 3,280,604 - Psest_3101 0.77 -1.4 3,280,713 - Psest_3101 0.83 +0.3 3,280,713 - Psest_3101 0.83 -0.2 3,280,713 - Psest_3101 0.83 +0.0 3,280,713 - Psest_3101 0.83 -0.1 3,280,713 - Psest_3101 0.83 -0.1 3,280,713 - Psest_3101 0.83 +0.6 3,280,713 - Psest_3101 0.83 +0.7 3,280,797 - Psest_3101 0.89 +0.1 3,280,797 - Psest_3101 0.89 -0.4 3,280,797 - Psest_3101 0.89 +0.1 3,280,805 + Psest_3101 0.89 -2.8 3,280,805 + Psest_3101 0.89 -1.8 3,280,806 - Psest_3101 0.89 -0.4 3,280,806 - Psest_3101 0.89 -0.5 3,280,806 - Psest_3101 0.89 -0.2 3,280,806 - Psest_3101 0.89 +0.1 3,280,806 - Psest_3101 0.89 -1.4 3,280,806 - Psest_3101 0.89 -0.2 3,280,806 - Psest_3101 0.89 -0.9 3,280,806 - Psest_3101 0.89 +0.4 3,280,806 - Psest_3101 0.89 +1.2 3,280,806 - Psest_3101 0.89 -0.0 3,280,806 - Psest_3101 0.89 +0.1 3,280,806 - Psest_3101 0.89 +0.5 3,280,806 - Psest_3101 0.89 -0.5 3,280,908 - +0.6 3,280,908 - -0.4 3,280,952 - -2.2 3,281,045 + Psest_3102 0.21 +0.6 3,281,045 + Psest_3102 0.21 +1.7 3,281,045 + Psest_3102 0.21 +0.3 3,281,045 + Psest_3102 0.21 -2.3 3,281,046 - Psest_3102 0.21 +0.6 3,281,046 - Psest_3102 0.21 -0.7 3,281,302 + Psest_3102 0.77 -0.8 3,281,302 + Psest_3102 0.77 +0.1 3,281,303 - Psest_3102 0.77 -0.1 3,281,303 - Psest_3102 0.77 -0.8 3,281,338 + Psest_3102 0.85 -1.5 3,281,338 + Psest_3102 0.85 -1.0 3,281,339 - Psest_3102 0.85 +1.1 3,281,339 - Psest_3102 0.85 +1.1 3,281,339 - Psest_3102 0.85 +1.4 3,281,339 - Psest_3102 0.85 +1.7 3,281,339 - Psest_3102 0.85 +0.1 3,281,339 - Psest_3102 0.85 +1.8 3,281,391 - +1.1 3,281,644 - +1.4 3,281,644 - -2.4 3,281,644 - +1.9 3,281,673 + -1.5 3,281,673 + -1.6 3,281,673 + +0.1 3,281,673 + +0.9 3,281,673 + +0.5 3,281,673 + -0.5 3,281,674 - +0.4 3,281,674 - +0.1 3,281,675 + -0.0 3,281,675 + +0.2 3,281,676 - +1.6 3,281,676 - +1.1 3,281,756 + -0.1 3,281,756 + -1.3 3,281,756 + +1.5 3,281,756 + -2.1 3,281,756 + +0.9 3,281,757 - +0.0 3,281,757 - +0.2 3,281,757 - +0.7 3,281,807 + +0.7 3,281,807 + -0.8 3,281,807 + -1.7
Or see this region's nucleotide sequence