Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0300 and Psest_0301 are separated by 60 nucleotides Psest_0301 and Psest_0302 are separated by 11 nucleotides
Psest_0300: Psest_0300 - Methyl-accepting chemotaxis protein, at 312,800 to 314,848
_0300
Psest_0301: Psest_0301 - Methylase of chemotaxis methyl-accepting proteins, at 314,909 to 315,775
_0301
Psest_0302: Psest_0302 - Chemotaxis protein histidine kinase and related kinases, at 315,787 to 323,013
_0302
Position (kb) 314
315
316 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 313.961 kb on + strand, within Psest_0300 at 313.961 kb on + strand, within Psest_0300 at 313.962 kb on - strand, within Psest_0300 at 313.962 kb on - strand, within Psest_0300 at 313.962 kb on - strand, within Psest_0300 at 313.962 kb on - strand, within Psest_0300 at 314.190 kb on + strand, within Psest_0300 at 314.200 kb on + strand, within Psest_0300 at 314.201 kb on - strand, within Psest_0300 at 314.210 kb on - strand, within Psest_0300 at 314.336 kb on - strand, within Psest_0300 at 314.372 kb on - strand, within Psest_0300 at 314.557 kb on - strand, within Psest_0300 at 314.743 kb on + strand at 314.951 kb on - strand at 315.093 kb on - strand, within Psest_0301 at 315.093 kb on - strand, within Psest_0301 at 315.093 kb on - strand, within Psest_0301 at 315.093 kb on - strand, within Psest_0301 at 315.093 kb on - strand, within Psest_0301 at 315.205 kb on - strand, within Psest_0301 at 315.215 kb on + strand, within Psest_0301 at 315.215 kb on + strand, within Psest_0301 at 315.215 kb on + strand, within Psest_0301 at 315.216 kb on - strand, within Psest_0301 at 315.219 kb on + strand, within Psest_0301 at 315.219 kb on + strand, within Psest_0301 at 315.220 kb on - strand, within Psest_0301 at 315.273 kb on + strand, within Psest_0301 at 315.273 kb on + strand, within Psest_0301 at 315.273 kb on + strand, within Psest_0301 at 315.273 kb on + strand, within Psest_0301 at 315.273 kb on + strand, within Psest_0301 at 315.273 kb on + strand, within Psest_0301 at 315.274 kb on - strand, within Psest_0301 at 315.274 kb on - strand, within Psest_0301 at 315.274 kb on - strand, within Psest_0301 at 315.417 kb on - strand, within Psest_0301 at 315.465 kb on - strand, within Psest_0301 at 315.609 kb on - strand, within Psest_0301 at 315.609 kb on - strand, within Psest_0301 at 315.691 kb on - strand at 315.758 kb on - strand at 315.805 kb on + strand at 315.805 kb on + strand at 315.805 kb on + strand at 315.805 kb on + strand at 315.805 kb on + strand at 315.805 kb on + strand at 315.805 kb on + strand at 315.805 kb on + strand at 315.805 kb on + strand at 315.805 kb on + strand at 315.806 kb on - strand at 315.849 kb on + strand at 315.849 kb on + strand at 315.849 kb on + strand at 315.849 kb on + strand at 315.849 kb on + strand at 315.850 kb on - strand at 315.925 kb on + strand at 315.925 kb on + strand at 315.925 kb on + strand at 315.925 kb on + strand at 315.925 kb on + strand at 315.926 kb on - strand at 315.926 kb on - strand at 315.926 kb on - strand at 315.926 kb on - strand at 315.926 kb on - strand at 315.926 kb on - strand at 315.926 kb on - strand at 315.926 kb on - strand at 315.926 kb on - strand at 315.926 kb on - strand at 315.926 kb on - strand at 315.926 kb on - strand at 315.926 kb on - strand at 315.926 kb on - strand at 315.926 kb on - strand at 316.149 kb on - strand at 316.363 kb on + strand at 316.363 kb on + strand at 316.363 kb on + strand at 316.363 kb on + strand at 316.364 kb on - strand at 316.364 kb on - strand at 316.364 kb on - strand at 316.444 kb on - strand at 316.444 kb on - strand at 316.444 kb on - strand at 316.472 kb on + strand at 316.472 kb on + strand at 316.472 kb on + strand at 316.472 kb on + strand at 316.472 kb on + strand at 316.472 kb on + strand at 316.473 kb on - strand at 316.473 kb on - strand at 316.473 kb on - strand at 316.473 kb on - strand at 316.473 kb on - strand at 316.600 kb on + strand, within Psest_0302 at 316.600 kb on + strand, within Psest_0302 at 316.600 kb on + strand, within Psest_0302 at 316.600 kb on + strand, within Psest_0302 at 316.600 kb on + strand, within Psest_0302 at 316.600 kb on + strand, within Psest_0302 at 316.600 kb on + strand, within Psest_0302 at 316.601 kb on - strand, within Psest_0302 at 316.601 kb on - strand, within Psest_0302 at 316.601 kb on - strand, within Psest_0302 at 316.601 kb on - strand, within Psest_0302 at 316.654 kb on + strand, within Psest_0302
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 313,961 + Psest_0300 0.57 -1.1 313,961 + Psest_0300 0.57 -1.0 313,962 - Psest_0300 0.57 -0.1 313,962 - Psest_0300 0.57 -0.2 313,962 - Psest_0300 0.57 +0.4 313,962 - Psest_0300 0.57 +1.0 314,190 + Psest_0300 0.68 -0.3 314,200 + Psest_0300 0.68 +1.7 314,201 - Psest_0300 0.68 +0.0 314,210 - Psest_0300 0.69 -0.0 314,336 - Psest_0300 0.75 -0.5 314,372 - Psest_0300 0.77 -0.3 314,557 - Psest_0300 0.86 +1.2 314,743 + +0.8 314,951 - +2.1 315,093 - Psest_0301 0.21 +1.6 315,093 - Psest_0301 0.21 +1.1 315,093 - Psest_0301 0.21 +2.0 315,093 - Psest_0301 0.21 +1.5 315,093 - Psest_0301 0.21 +2.6 315,205 - Psest_0301 0.34 +0.3 315,215 + Psest_0301 0.35 -2.7 315,215 + Psest_0301 0.35 -2.6 315,215 + Psest_0301 0.35 -2.4 315,216 - Psest_0301 0.35 +0.7 315,219 + Psest_0301 0.36 -3.6 315,219 + Psest_0301 0.36 -0.3 315,220 - Psest_0301 0.36 +1.3 315,273 + Psest_0301 0.42 +0.3 315,273 + Psest_0301 0.42 -1.6 315,273 + Psest_0301 0.42 -1.6 315,273 + Psest_0301 0.42 -1.1 315,273 + Psest_0301 0.42 -1.3 315,273 + Psest_0301 0.42 -0.2 315,274 - Psest_0301 0.42 +0.7 315,274 - Psest_0301 0.42 +0.6 315,274 - Psest_0301 0.42 +0.2 315,417 - Psest_0301 0.59 +1.9 315,465 - Psest_0301 0.64 +0.9 315,609 - Psest_0301 0.81 -0.3 315,609 - Psest_0301 0.81 +0.8 315,691 - +1.3 315,758 - +1.2 315,805 + -1.9 315,805 + +0.0 315,805 + +0.1 315,805 + -0.2 315,805 + +0.5 315,805 + -2.2 315,805 + +0.5 315,805 + -0.3 315,805 + +1.5 315,805 + -0.1 315,806 - +0.7 315,849 + +0.9 315,849 + +0.0 315,849 + +0.5 315,849 + +0.2 315,849 + -0.1 315,850 - -0.3 315,925 + -0.4 315,925 + +0.1 315,925 + -1.2 315,925 + -1.7 315,925 + +0.0 315,926 - +0.2 315,926 - +1.6 315,926 - +1.1 315,926 - -1.0 315,926 - +0.6 315,926 - +0.4 315,926 - +0.7 315,926 - +0.5 315,926 - +0.5 315,926 - +0.5 315,926 - -1.1 315,926 - -1.0 315,926 - -0.7 315,926 - +0.3 315,926 - +0.6 316,149 - -0.1 316,363 + +0.3 316,363 + +0.5 316,363 + +0.1 316,363 + +0.7 316,364 - +1.0 316,364 - +1.8 316,364 - +1.8 316,444 - +0.7 316,444 - +0.4 316,444 - +0.5 316,472 + -0.6 316,472 + -0.1 316,472 + +0.7 316,472 + +0.3 316,472 + +0.1 316,472 + +0.8 316,473 - +1.7 316,473 - +1.1 316,473 - +2.9 316,473 - +1.3 316,473 - +2.1 316,600 + Psest_0302 0.11 +0.4 316,600 + Psest_0302 0.11 +1.4 316,600 + Psest_0302 0.11 -0.1 316,600 + Psest_0302 0.11 +0.8 316,600 + Psest_0302 0.11 -0.4 316,600 + Psest_0302 0.11 +1.0 316,600 + Psest_0302 0.11 -0.0 316,601 - Psest_0302 0.11 -0.0 316,601 - Psest_0302 0.11 +3.5 316,601 - Psest_0302 0.11 +1.1 316,601 - Psest_0302 0.11 +1.1 316,654 + Psest_0302 0.12 +2.9
Or see this region's nucleotide sequence