Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0297 and Psest_0298 are separated by 43 nucleotides Psest_0298 and Psest_0299 are separated by 41 nucleotides Psest_0299 and Psest_0300 are separated by 76 nucleotides
Psest_0297: Psest_0297 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 311,329 to 311,736
_0297
Psest_0298: Psest_0298 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 311,780 to 312,145
_0298
Psest_0299: Psest_0299 - Chemotaxis signal transduction protein, at 312,187 to 312,723
_0299
Psest_0300: Psest_0300 - Methyl-accepting chemotaxis protein, at 312,800 to 314,848
_0300
Position (kb) 312
313 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 311.206 kb on + strand at 311.229 kb on + strand at 311.229 kb on + strand at 311.230 kb on - strand at 311.288 kb on + strand at 311.289 kb on - strand at 311.299 kb on + strand at 311.299 kb on + strand at 311.299 kb on + strand at 311.299 kb on + strand at 311.300 kb on - strand at 311.417 kb on + strand, within Psest_0297 at 311.417 kb on + strand, within Psest_0297 at 311.417 kb on + strand, within Psest_0297 at 311.417 kb on + strand, within Psest_0297 at 311.417 kb on + strand, within Psest_0297 at 311.418 kb on - strand, within Psest_0297 at 311.505 kb on + strand, within Psest_0297 at 311.505 kb on + strand, within Psest_0297 at 311.505 kb on + strand, within Psest_0297 at 311.505 kb on + strand, within Psest_0297 at 311.506 kb on - strand, within Psest_0297 at 311.506 kb on - strand, within Psest_0297 at 311.629 kb on - strand, within Psest_0297 at 311.629 kb on - strand, within Psest_0297 at 311.768 kb on + strand at 311.822 kb on + strand, within Psest_0298 at 311.822 kb on + strand, within Psest_0298 at 311.822 kb on + strand, within Psest_0298 at 311.822 kb on + strand, within Psest_0298 at 311.822 kb on + strand, within Psest_0298 at 311.822 kb on + strand, within Psest_0298 at 311.822 kb on + strand, within Psest_0298 at 311.822 kb on + strand, within Psest_0298 at 311.823 kb on - strand, within Psest_0298 at 311.823 kb on - strand, within Psest_0298 at 311.823 kb on - strand, within Psest_0298 at 311.823 kb on - strand, within Psest_0298 at 311.926 kb on - strand, within Psest_0298 at 312.080 kb on + strand, within Psest_0298 at 312.081 kb on - strand, within Psest_0298 at 312.232 kb on - strand at 312.630 kb on + strand, within Psest_0299 at 312.630 kb on + strand, within Psest_0299 at 312.630 kb on + strand, within Psest_0299 at 312.630 kb on + strand, within Psest_0299 at 312.630 kb on + strand, within Psest_0299 at 312.630 kb on + strand, within Psest_0299 at 312.630 kb on + strand, within Psest_0299 at 312.630 kb on + strand, within Psest_0299 at 312.630 kb on + strand, within Psest_0299 at 312.631 kb on - strand, within Psest_0299 at 312.631 kb on - strand, within Psest_0299 at 312.707 kb on + strand at 312.708 kb on - strand at 312.722 kb on - strand at 312.722 kb on - strand at 312.722 kb on - strand at 312.727 kb on + strand at 312.727 kb on + strand at 312.727 kb on + strand at 312.727 kb on + strand at 312.727 kb on + strand at 312.727 kb on + strand at 312.728 kb on - strand at 312.728 kb on - strand at 312.728 kb on - strand at 312.728 kb on - strand at 312.728 kb on - strand at 312.728 kb on - strand at 312.728 kb on - strand at 312.728 kb on - strand at 312.810 kb on + strand at 312.810 kb on + strand at 312.810 kb on + strand at 312.810 kb on + strand at 312.811 kb on - strand at 312.817 kb on + strand at 312.817 kb on + strand at 312.817 kb on + strand at 312.818 kb on - strand at 312.825 kb on + strand at 312.891 kb on + strand at 312.891 kb on + strand at 312.892 kb on - strand at 312.892 kb on - strand at 312.914 kb on + strand at 312.915 kb on - strand at 312.923 kb on - strand at 312.947 kb on + strand at 312.947 kb on + strand at 312.947 kb on + strand at 312.947 kb on + strand at 312.947 kb on + strand at 312.947 kb on + strand at 312.948 kb on - strand at 312.948 kb on - strand at 312.948 kb on - strand at 312.948 kb on - strand at 312.975 kb on + strand at 312.976 kb on - strand at 312.976 kb on - strand at 313.083 kb on - strand, within Psest_0300 at 313.186 kb on + strand, within Psest_0300 at 313.218 kb on + strand, within Psest_0300 at 313.218 kb on + strand, within Psest_0300 at 313.219 kb on - strand, within Psest_0300 at 313.219 kb on - strand, within Psest_0300 at 313.219 kb on - strand, within Psest_0300 at 313.219 kb on - strand, within Psest_0300 at 313.243 kb on + strand, within Psest_0300 at 313.244 kb on - strand, within Psest_0300 at 313.244 kb on - strand, within Psest_0300 at 313.369 kb on + strand, within Psest_0300 at 313.369 kb on + strand, within Psest_0300 at 313.370 kb on - strand, within Psest_0300 at 313.370 kb on - strand, within Psest_0300 at 313.370 kb on - strand, within Psest_0300 at 313.370 kb on - strand, within Psest_0300 at 313.383 kb on + strand, within Psest_0300 at 313.429 kb on + strand, within Psest_0300 at 313.430 kb on - strand, within Psest_0300 at 313.465 kb on - strand, within Psest_0300 at 313.569 kb on + strand, within Psest_0300 at 313.570 kb on - strand, within Psest_0300 at 313.570 kb on - strand, within Psest_0300 at 313.639 kb on + strand, within Psest_0300 at 313.639 kb on + strand, within Psest_0300 at 313.639 kb on + strand, within Psest_0300 at 313.640 kb on - strand, within Psest_0300 at 313.640 kb on - strand, within Psest_0300
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 311,206 + -0.7 311,229 + -0.7 311,229 + -2.6 311,230 - -1.2 311,288 + -1.9 311,289 - +1.1 311,299 + +0.6 311,299 + -0.9 311,299 + -2.3 311,299 + -2.2 311,300 - -0.3 311,417 + Psest_0297 0.22 -0.0 311,417 + Psest_0297 0.22 -0.7 311,417 + Psest_0297 0.22 -2.0 311,417 + Psest_0297 0.22 -1.0 311,417 + Psest_0297 0.22 +0.1 311,418 - Psest_0297 0.22 -0.2 311,505 + Psest_0297 0.43 -3.3 311,505 + Psest_0297 0.43 -2.9 311,505 + Psest_0297 0.43 -0.0 311,505 + Psest_0297 0.43 +0.1 311,506 - Psest_0297 0.43 -0.7 311,506 - Psest_0297 0.43 -1.5 311,629 - Psest_0297 0.74 -1.4 311,629 - Psest_0297 0.74 -2.2 311,768 + -1.0 311,822 + Psest_0298 0.11 -0.5 311,822 + Psest_0298 0.11 -2.1 311,822 + Psest_0298 0.11 -2.0 311,822 + Psest_0298 0.11 +0.1 311,822 + Psest_0298 0.11 +0.5 311,822 + Psest_0298 0.11 +0.5 311,822 + Psest_0298 0.11 -0.1 311,822 + Psest_0298 0.11 -2.3 311,823 - Psest_0298 0.12 -0.0 311,823 - Psest_0298 0.12 -0.2 311,823 - Psest_0298 0.12 -0.6 311,823 - Psest_0298 0.12 -0.5 311,926 - Psest_0298 0.40 +2.7 312,080 + Psest_0298 0.82 -0.8 312,081 - Psest_0298 0.82 +0.0 312,232 - +0.3 312,630 + Psest_0299 0.82 +0.1 312,630 + Psest_0299 0.82 -0.2 312,630 + Psest_0299 0.82 -2.3 312,630 + Psest_0299 0.82 -0.9 312,630 + Psest_0299 0.82 -0.1 312,630 + Psest_0299 0.82 -0.2 312,630 + Psest_0299 0.82 +0.4 312,630 + Psest_0299 0.82 -0.5 312,630 + Psest_0299 0.82 +0.2 312,631 - Psest_0299 0.83 -0.3 312,631 - Psest_0299 0.83 -0.5 312,707 + +0.1 312,708 - +0.6 312,722 - +2.2 312,722 - +0.2 312,722 - -0.2 312,727 + -1.4 312,727 + -1.2 312,727 + -0.4 312,727 + -1.5 312,727 + -0.6 312,727 + -1.4 312,728 - +1.5 312,728 - +0.2 312,728 - +0.4 312,728 - -0.8 312,728 - +1.0 312,728 - -1.1 312,728 - +0.6 312,728 - +0.6 312,810 + +1.0 312,810 + +0.9 312,810 + +0.6 312,810 + +0.3 312,811 - -0.7 312,817 + +0.2 312,817 + +0.7 312,817 + +1.1 312,818 - -0.4 312,825 + +0.9 312,891 + +0.4 312,891 + -2.0 312,892 - -1.0 312,892 - -1.4 312,914 + +0.1 312,915 - +0.3 312,923 - -0.8 312,947 + +0.1 312,947 + +0.3 312,947 + +1.4 312,947 + +0.0 312,947 + +2.0 312,947 + +0.6 312,948 - -0.2 312,948 - -0.5 312,948 - +0.7 312,948 - -2.4 312,975 + +0.4 312,976 - +3.6 312,976 - -0.5 313,083 - Psest_0300 0.14 -0.2 313,186 + Psest_0300 0.19 -0.2 313,218 + Psest_0300 0.20 -0.3 313,218 + Psest_0300 0.20 +0.3 313,219 - Psest_0300 0.20 -0.8 313,219 - Psest_0300 0.20 -0.5 313,219 - Psest_0300 0.20 -0.6 313,219 - Psest_0300 0.20 +0.4 313,243 + Psest_0300 0.22 +0.3 313,244 - Psest_0300 0.22 +1.7 313,244 - Psest_0300 0.22 +0.9 313,369 + Psest_0300 0.28 -0.1 313,369 + Psest_0300 0.28 -0.7 313,370 - Psest_0300 0.28 +0.3 313,370 - Psest_0300 0.28 +0.3 313,370 - Psest_0300 0.28 +0.3 313,370 - Psest_0300 0.28 -0.1 313,383 + Psest_0300 0.28 -1.2 313,429 + Psest_0300 0.31 -0.3 313,430 - Psest_0300 0.31 +2.9 313,465 - Psest_0300 0.32 -2.3 313,569 + Psest_0300 0.38 +1.1 313,570 - Psest_0300 0.38 +0.5 313,570 - Psest_0300 0.38 +1.1 313,639 + Psest_0300 0.41 +0.1 313,639 + Psest_0300 0.41 +0.4 313,639 + Psest_0300 0.41 +0.5 313,640 - Psest_0300 0.41 +0.2 313,640 - Psest_0300 0.41 +0.3
Or see this region's nucleotide sequence