Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0285 and Psest_0286 are separated by 59 nucleotides Psest_0286 and Psest_0287 overlap by 4 nucleotides Psest_0287 and Psest_0288 overlap by 1 nucleotides
Psest_0285: Psest_0285 - pilus retraction protein PilT, at 300,340 to 301,374
_0285
Psest_0286: Psest_0286 - pilus retraction protein PilT, at 301,434 to 302,579
_0286
Psest_0287: Psest_0287 - probable DNA metabolism protein, at 302,576 to 303,412
_0287
Psest_0288: Psest_0288 - putative DNA modification/repair radical SAM protein, at 303,412 to 304,623
_0288
Position (kb) 301
302
303 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 300.493 kb on + strand, within Psest_0285 at 300.493 kb on + strand, within Psest_0285 at 300.493 kb on + strand, within Psest_0285 at 300.494 kb on - strand, within Psest_0285 at 300.494 kb on - strand, within Psest_0285 at 300.494 kb on - strand, within Psest_0285 at 300.494 kb on - strand, within Psest_0285 at 300.494 kb on - strand, within Psest_0285 at 300.494 kb on - strand, within Psest_0285 at 300.776 kb on - strand, within Psest_0285 at 300.793 kb on + strand, within Psest_0285 at 300.793 kb on + strand, within Psest_0285 at 300.794 kb on - strand, within Psest_0285 at 300.794 kb on - strand, within Psest_0285 at 300.794 kb on - strand, within Psest_0285 at 301.243 kb on + strand, within Psest_0285 at 301.243 kb on + strand, within Psest_0285 at 301.243 kb on + strand, within Psest_0285 at 301.243 kb on + strand, within Psest_0285 at 301.243 kb on + strand, within Psest_0285 at 301.243 kb on + strand, within Psest_0285 at 301.243 kb on + strand, within Psest_0285 at 301.243 kb on + strand, within Psest_0285 at 301.243 kb on + strand, within Psest_0285 at 301.243 kb on + strand, within Psest_0285 at 301.244 kb on - strand, within Psest_0285 at 301.244 kb on - strand, within Psest_0285 at 301.244 kb on - strand, within Psest_0285 at 301.244 kb on - strand, within Psest_0285 at 301.244 kb on - strand, within Psest_0285 at 301.244 kb on - strand, within Psest_0285 at 301.244 kb on - strand, within Psest_0285 at 301.244 kb on - strand, within Psest_0285 at 301.244 kb on - strand, within Psest_0285 at 301.244 kb on - strand, within Psest_0285 at 301.244 kb on - strand, within Psest_0285 at 301.323 kb on + strand at 301.323 kb on + strand at 301.323 kb on + strand at 301.323 kb on + strand at 301.324 kb on - strand at 301.372 kb on + strand at 301.373 kb on - strand at 301.427 kb on + strand at 301.428 kb on - strand at 301.693 kb on - strand, within Psest_0286 at 301.693 kb on - strand, within Psest_0286 at 302.070 kb on + strand, within Psest_0286 at 302.070 kb on + strand, within Psest_0286 at 302.071 kb on - strand, within Psest_0286 at 302.071 kb on - strand, within Psest_0286 at 302.071 kb on - strand, within Psest_0286 at 302.397 kb on + strand, within Psest_0286 at 302.397 kb on + strand, within Psest_0286 at 302.397 kb on + strand, within Psest_0286 at 302.398 kb on - strand, within Psest_0286 at 302.398 kb on - strand, within Psest_0286 at 302.398 kb on - strand, within Psest_0286 at 302.398 kb on - strand, within Psest_0286 at 302.406 kb on + strand, within Psest_0286 at 302.406 kb on + strand, within Psest_0286 at 302.406 kb on + strand, within Psest_0286 at 302.406 kb on + strand, within Psest_0286 at 302.406 kb on + strand, within Psest_0286 at 302.406 kb on + strand, within Psest_0286 at 302.407 kb on - strand, within Psest_0286 at 302.407 kb on - strand, within Psest_0286 at 302.407 kb on - strand, within Psest_0286 at 302.407 kb on - strand, within Psest_0286 at 302.407 kb on - strand, within Psest_0286 at 302.407 kb on - strand, within Psest_0286 at 302.407 kb on - strand, within Psest_0286 at 302.407 kb on - strand, within Psest_0286 at 302.407 kb on - strand, within Psest_0286 at 302.407 kb on - strand, within Psest_0286 at 302.427 kb on + strand, within Psest_0286 at 302.427 kb on + strand, within Psest_0286 at 302.428 kb on - strand, within Psest_0286 at 302.428 kb on - strand, within Psest_0286 at 302.428 kb on - strand, within Psest_0286 at 302.428 kb on - strand, within Psest_0286 at 302.428 kb on - strand, within Psest_0286 at 302.784 kb on + strand, within Psest_0287 at 302.784 kb on + strand, within Psest_0287 at 302.784 kb on + strand, within Psest_0287 at 302.785 kb on - strand, within Psest_0287 at 302.787 kb on + strand, within Psest_0287 at 302.787 kb on + strand, within Psest_0287 at 302.787 kb on + strand, within Psest_0287 at 302.787 kb on + strand, within Psest_0287 at 302.787 kb on + strand, within Psest_0287 at 302.787 kb on + strand, within Psest_0287 at 302.787 kb on + strand, within Psest_0287 at 302.787 kb on + strand, within Psest_0287 at 302.788 kb on - strand, within Psest_0287 at 302.788 kb on - strand, within Psest_0287 at 302.788 kb on - strand, within Psest_0287 at 302.788 kb on - strand, within Psest_0287 at 302.788 kb on - strand, within Psest_0287 at 302.788 kb on - strand, within Psest_0287 at 302.788 kb on - strand, within Psest_0287 at 302.788 kb on - strand, within Psest_0287 at 302.799 kb on - strand, within Psest_0287 at 302.865 kb on + strand, within Psest_0287 at 302.865 kb on + strand, within Psest_0287 at 302.865 kb on + strand, within Psest_0287 at 302.865 kb on + strand, within Psest_0287 at 302.865 kb on + strand, within Psest_0287 at 302.865 kb on + strand, within Psest_0287 at 302.866 kb on - strand, within Psest_0287 at 302.866 kb on - strand, within Psest_0287 at 302.866 kb on - strand, within Psest_0287 at 302.866 kb on - strand, within Psest_0287 at 302.868 kb on + strand, within Psest_0287 at 302.868 kb on + strand, within Psest_0287 at 302.868 kb on + strand, within Psest_0287 at 302.868 kb on + strand, within Psest_0287 at 302.868 kb on + strand, within Psest_0287 at 302.868 kb on + strand, within Psest_0287 at 302.868 kb on + strand, within Psest_0287 at 302.868 kb on + strand, within Psest_0287 at 302.868 kb on + strand, within Psest_0287 at 302.868 kb on + strand, within Psest_0287 at 302.868 kb on + strand, within Psest_0287 at 302.869 kb on - strand, within Psest_0287 at 302.869 kb on - strand, within Psest_0287 at 302.869 kb on - strand, within Psest_0287 at 302.869 kb on - strand, within Psest_0287 at 302.869 kb on - strand, within Psest_0287 at 302.869 kb on - strand, within Psest_0287 at 302.869 kb on - strand, within Psest_0287 at 302.869 kb on - strand, within Psest_0287 at 302.869 kb on - strand, within Psest_0287 at 302.869 kb on - strand, within Psest_0287 at 302.869 kb on - strand, within Psest_0287 at 302.869 kb on - strand, within Psest_0287 at 302.869 kb on - strand, within Psest_0287 at 302.869 kb on - strand, within Psest_0287 at 302.969 kb on + strand, within Psest_0287 at 302.969 kb on + strand, within Psest_0287 at 302.969 kb on + strand, within Psest_0287 at 302.969 kb on + strand, within Psest_0287 at 302.970 kb on - strand, within Psest_0287 at 302.970 kb on - strand, within Psest_0287 at 303.092 kb on + strand, within Psest_0287 at 303.092 kb on + strand, within Psest_0287 at 303.092 kb on + strand, within Psest_0287 at 303.092 kb on + strand, within Psest_0287 at 303.092 kb on + strand, within Psest_0287 at 303.093 kb on - strand, within Psest_0287 at 303.093 kb on - strand, within Psest_0287 at 303.093 kb on - strand, within Psest_0287 at 303.093 kb on - strand, within Psest_0287 at 303.542 kb on - strand, within Psest_0288 at 303.542 kb on - strand, within Psest_0288
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 300,493 + Psest_0285 0.15 -0.8 300,493 + Psest_0285 0.15 -1.0 300,493 + Psest_0285 0.15 -1.6 300,494 - Psest_0285 0.15 -2.5 300,494 - Psest_0285 0.15 -2.5 300,494 - Psest_0285 0.15 -2.8 300,494 - Psest_0285 0.15 -2.0 300,494 - Psest_0285 0.15 -1.3 300,494 - Psest_0285 0.15 +0.2 300,776 - Psest_0285 0.42 -0.9 300,793 + Psest_0285 0.44 -2.1 300,793 + Psest_0285 0.44 -3.2 300,794 - Psest_0285 0.44 -2.0 300,794 - Psest_0285 0.44 -3.5 300,794 - Psest_0285 0.44 -2.3 301,243 + Psest_0285 0.87 -3.6 301,243 + Psest_0285 0.87 -2.9 301,243 + Psest_0285 0.87 -1.4 301,243 + Psest_0285 0.87 -2.5 301,243 + Psest_0285 0.87 -2.4 301,243 + Psest_0285 0.87 -0.1 301,243 + Psest_0285 0.87 -1.5 301,243 + Psest_0285 0.87 -0.6 301,243 + Psest_0285 0.87 +0.4 301,243 + Psest_0285 0.87 +0.3 301,244 - Psest_0285 0.87 -1.7 301,244 - Psest_0285 0.87 -0.3 301,244 - Psest_0285 0.87 -1.9 301,244 - Psest_0285 0.87 -2.5 301,244 - Psest_0285 0.87 -1.5 301,244 - Psest_0285 0.87 +0.0 301,244 - Psest_0285 0.87 -2.9 301,244 - Psest_0285 0.87 -1.9 301,244 - Psest_0285 0.87 -2.4 301,244 - Psest_0285 0.87 -0.6 301,244 - Psest_0285 0.87 -2.4 301,323 + -0.7 301,323 + -2.1 301,323 + -1.9 301,323 + -3.5 301,324 - -3.0 301,372 + -0.4 301,373 - -2.6 301,427 + -1.0 301,428 - +1.3 301,693 - Psest_0286 0.23 +1.1 301,693 - Psest_0286 0.23 +0.4 302,070 + Psest_0286 0.55 -0.8 302,070 + Psest_0286 0.55 -2.2 302,071 - Psest_0286 0.56 -0.8 302,071 - Psest_0286 0.56 +0.7 302,071 - Psest_0286 0.56 +0.1 302,397 + Psest_0286 0.84 +0.3 302,397 + Psest_0286 0.84 +2.4 302,397 + Psest_0286 0.84 +1.6 302,398 - Psest_0286 0.84 +1.1 302,398 - Psest_0286 0.84 +0.6 302,398 - Psest_0286 0.84 +0.3 302,398 - Psest_0286 0.84 +4.2 302,406 + Psest_0286 0.85 +1.3 302,406 + Psest_0286 0.85 +1.0 302,406 + Psest_0286 0.85 +0.1 302,406 + Psest_0286 0.85 +1.8 302,406 + Psest_0286 0.85 +0.2 302,406 + Psest_0286 0.85 +1.4 302,407 - Psest_0286 0.85 -0.6 302,407 - Psest_0286 0.85 +0.6 302,407 - Psest_0286 0.85 +0.5 302,407 - Psest_0286 0.85 -0.2 302,407 - Psest_0286 0.85 -0.3 302,407 - Psest_0286 0.85 +0.6 302,407 - Psest_0286 0.85 -0.4 302,407 - Psest_0286 0.85 -0.7 302,407 - Psest_0286 0.85 +1.2 302,407 - Psest_0286 0.85 -0.1 302,427 + Psest_0286 0.87 +1.3 302,427 + Psest_0286 0.87 +1.4 302,428 - Psest_0286 0.87 -0.4 302,428 - Psest_0286 0.87 -1.9 302,428 - Psest_0286 0.87 +1.0 302,428 - Psest_0286 0.87 -1.1 302,428 - Psest_0286 0.87 +0.3 302,784 + Psest_0287 0.25 -0.4 302,784 + Psest_0287 0.25 +1.0 302,784 + Psest_0287 0.25 -1.1 302,785 - Psest_0287 0.25 +1.0 302,787 + Psest_0287 0.25 -0.5 302,787 + Psest_0287 0.25 +0.7 302,787 + Psest_0287 0.25 +0.1 302,787 + Psest_0287 0.25 -0.5 302,787 + Psest_0287 0.25 -0.1 302,787 + Psest_0287 0.25 -0.4 302,787 + Psest_0287 0.25 +0.6 302,787 + Psest_0287 0.25 -0.0 302,788 - Psest_0287 0.25 -0.3 302,788 - Psest_0287 0.25 +0.4 302,788 - Psest_0287 0.25 -0.0 302,788 - Psest_0287 0.25 +0.6 302,788 - Psest_0287 0.25 +0.4 302,788 - Psest_0287 0.25 +0.6 302,788 - Psest_0287 0.25 +1.1 302,788 - Psest_0287 0.25 +1.2 302,799 - Psest_0287 0.27 +0.9 302,865 + Psest_0287 0.35 +1.8 302,865 + Psest_0287 0.35 +0.5 302,865 + Psest_0287 0.35 -1.0 302,865 + Psest_0287 0.35 -0.7 302,865 + Psest_0287 0.35 +1.4 302,865 + Psest_0287 0.35 +0.4 302,866 - Psest_0287 0.35 +0.8 302,866 - Psest_0287 0.35 +0.7 302,866 - Psest_0287 0.35 +0.5 302,866 - Psest_0287 0.35 -1.5 302,868 + Psest_0287 0.35 +0.4 302,868 + Psest_0287 0.35 -1.0 302,868 + Psest_0287 0.35 +0.6 302,868 + Psest_0287 0.35 +0.3 302,868 + Psest_0287 0.35 +1.1 302,868 + Psest_0287 0.35 +1.7 302,868 + Psest_0287 0.35 +0.4 302,868 + Psest_0287 0.35 -0.1 302,868 + Psest_0287 0.35 +0.2 302,868 + Psest_0287 0.35 +0.6 302,868 + Psest_0287 0.35 +1.1 302,869 - Psest_0287 0.35 +0.2 302,869 - Psest_0287 0.35 -0.0 302,869 - Psest_0287 0.35 +2.1 302,869 - Psest_0287 0.35 -0.3 302,869 - Psest_0287 0.35 +0.9 302,869 - Psest_0287 0.35 +1.4 302,869 - Psest_0287 0.35 -1.0 302,869 - Psest_0287 0.35 -0.8 302,869 - Psest_0287 0.35 +0.2 302,869 - Psest_0287 0.35 +0.6 302,869 - Psest_0287 0.35 +0.2 302,869 - Psest_0287 0.35 +0.7 302,869 - Psest_0287 0.35 +1.2 302,869 - Psest_0287 0.35 +0.5 302,969 + Psest_0287 0.47 +0.9 302,969 + Psest_0287 0.47 +0.1 302,969 + Psest_0287 0.47 -0.8 302,969 + Psest_0287 0.47 +0.8 302,970 - Psest_0287 0.47 +2.5 302,970 - Psest_0287 0.47 -0.5 303,092 + Psest_0287 0.62 -0.5 303,092 + Psest_0287 0.62 -0.6 303,092 + Psest_0287 0.62 -0.8 303,092 + Psest_0287 0.62 -0.3 303,092 + Psest_0287 0.62 -0.1 303,093 - Psest_0287 0.62 +0.7 303,093 - Psest_0287 0.62 -0.1 303,093 - Psest_0287 0.62 -0.9 303,093 - Psest_0287 0.62 -0.6 303,542 - Psest_0288 0.11 +0.2 303,542 - Psest_0288 0.11 +0.8
Or see this region's nucleotide sequence