Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0277 and Psest_0278 overlap by 4 nucleotides Psest_0278 and Psest_0279 are separated by 26 nucleotides Psest_0279 and Psest_0280 are separated by 9 nucleotides
Psest_0277: Psest_0277 - non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family, at 292,995 to 293,588
_0277
Psest_0278: Psest_0278 - hypothetical protein, at 293,585 to 294,007
_0278
Psest_0279: Psest_0279 - methionine biosynthesis protein MetW, at 294,034 to 294,633
_0279
Psest_0280: Psest_0280 - homoserine O-acetyltransferase, at 294,643 to 295,782
_0280
Position (kb) 294
295 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 293.332 kb on + strand, within Psest_0277 at 293.332 kb on + strand, within Psest_0277 at 293.333 kb on - strand, within Psest_0277 at 293.649 kb on - strand, within Psest_0278 at 293.703 kb on + strand, within Psest_0278 at 293.703 kb on + strand, within Psest_0278 at 293.704 kb on - strand, within Psest_0278 at 293.704 kb on - strand, within Psest_0278 at 293.704 kb on - strand, within Psest_0278 at 293.706 kb on + strand, within Psest_0278 at 293.706 kb on + strand, within Psest_0278 at 293.706 kb on + strand, within Psest_0278 at 293.706 kb on + strand, within Psest_0278 at 293.706 kb on + strand, within Psest_0278 at 293.707 kb on - strand, within Psest_0278 at 293.707 kb on - strand, within Psest_0278 at 293.707 kb on - strand, within Psest_0278 at 293.707 kb on - strand, within Psest_0278 at 293.707 kb on - strand, within Psest_0278 at 293.913 kb on + strand, within Psest_0278 at 293.913 kb on + strand, within Psest_0278 at 293.913 kb on + strand, within Psest_0278 at 293.913 kb on + strand, within Psest_0278 at 293.914 kb on - strand, within Psest_0278 at 293.914 kb on - strand, within Psest_0278 at 293.914 kb on - strand, within Psest_0278 at 293.914 kb on - strand, within Psest_0278 at 293.914 kb on - strand, within Psest_0278 at 293.914 kb on - strand, within Psest_0278 at 293.914 kb on - strand, within Psest_0278 at 293.914 kb on - strand, within Psest_0278 at 293.925 kb on + strand, within Psest_0278 at 293.926 kb on - strand, within Psest_0278 at 293.926 kb on - strand, within Psest_0278 at 293.926 kb on - strand, within Psest_0278 at 294.007 kb on + strand at 294.007 kb on + strand at 294.007 kb on + strand at 294.008 kb on - strand at 294.008 kb on - strand at 294.013 kb on + strand at 294.059 kb on + strand at 294.060 kb on - strand at 294.218 kb on + strand, within Psest_0279 at 294.218 kb on + strand, within Psest_0279 at 294.219 kb on - strand, within Psest_0279 at 294.219 kb on - strand, within Psest_0279 at 294.219 kb on - strand, within Psest_0279 at 294.219 kb on - strand, within Psest_0279 at 294.219 kb on - strand, within Psest_0279 at 294.219 kb on - strand, within Psest_0279 at 294.219 kb on - strand, within Psest_0279 at 294.227 kb on + strand, within Psest_0279 at 294.227 kb on + strand, within Psest_0279 at 294.228 kb on - strand, within Psest_0279 at 294.228 kb on - strand, within Psest_0279 at 294.644 kb on + strand at 294.644 kb on + strand at 294.645 kb on - strand at 294.646 kb on + strand at 294.646 kb on + strand at 294.646 kb on + strand at 294.646 kb on + strand at 294.646 kb on + strand at 294.646 kb on + strand at 294.647 kb on - strand at 294.647 kb on - strand at 294.665 kb on + strand at 294.743 kb on + strand at 294.744 kb on - strand at 294.905 kb on + strand, within Psest_0280 at 294.906 kb on - strand, within Psest_0280 at 294.906 kb on - strand, within Psest_0280 at 294.906 kb on - strand, within Psest_0280 at 294.932 kb on + strand, within Psest_0280 at 294.933 kb on - strand, within Psest_0280 at 294.933 kb on - strand, within Psest_0280 at 294.933 kb on - strand, within Psest_0280 at 294.933 kb on - strand, within Psest_0280 at 294.933 kb on - strand, within Psest_0280 at 294.933 kb on - strand, within Psest_0280 at 294.937 kb on - strand, within Psest_0280 at 294.937 kb on - strand, within Psest_0280 at 294.937 kb on - strand, within Psest_0280 at 294.983 kb on + strand, within Psest_0280 at 294.984 kb on - strand, within Psest_0280 at 294.984 kb on - strand, within Psest_0280 at 295.019 kb on + strand, within Psest_0280 at 295.019 kb on + strand, within Psest_0280 at 295.019 kb on + strand, within Psest_0280 at 295.019 kb on + strand, within Psest_0280 at 295.020 kb on - strand, within Psest_0280 at 295.082 kb on + strand, within Psest_0280 at 295.083 kb on - strand, within Psest_0280 at 295.083 kb on - strand, within Psest_0280 at 295.419 kb on - strand, within Psest_0280 at 295.512 kb on + strand, within Psest_0280 at 295.512 kb on + strand, within Psest_0280 at 295.512 kb on + strand, within Psest_0280 at 295.513 kb on - strand, within Psest_0280 at 295.513 kb on - strand, within Psest_0280 at 295.513 kb on - strand, within Psest_0280 at 295.516 kb on + strand, within Psest_0280 at 295.516 kb on + strand, within Psest_0280 at 295.516 kb on + strand, within Psest_0280 at 295.516 kb on + strand, within Psest_0280 at 295.516 kb on + strand, within Psest_0280 at 295.516 kb on + strand, within Psest_0280 at 295.516 kb on + strand, within Psest_0280 at 295.516 kb on + strand, within Psest_0280 at 295.516 kb on + strand, within Psest_0280 at 295.516 kb on + strand, within Psest_0280 at 295.516 kb on + strand, within Psest_0280 at 295.517 kb on - strand, within Psest_0280 at 295.517 kb on - strand, within Psest_0280 at 295.517 kb on - strand, within Psest_0280 at 295.517 kb on - strand, within Psest_0280 at 295.517 kb on - strand, within Psest_0280 at 295.560 kb on + strand, within Psest_0280
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 293,332 + Psest_0277 0.57 -0.7 293,332 + Psest_0277 0.57 -0.3 293,333 - Psest_0277 0.57 -0.5 293,649 - Psest_0278 0.15 -1.5 293,703 + Psest_0278 0.28 +0.7 293,703 + Psest_0278 0.28 -0.5 293,704 - Psest_0278 0.28 -1.9 293,704 - Psest_0278 0.28 -1.2 293,704 - Psest_0278 0.28 -0.6 293,706 + Psest_0278 0.29 -0.7 293,706 + Psest_0278 0.29 -0.5 293,706 + Psest_0278 0.29 -1.0 293,706 + Psest_0278 0.29 -1.2 293,706 + Psest_0278 0.29 -0.6 293,707 - Psest_0278 0.29 -2.1 293,707 - Psest_0278 0.29 -1.5 293,707 - Psest_0278 0.29 -1.7 293,707 - Psest_0278 0.29 -1.2 293,707 - Psest_0278 0.29 -0.4 293,913 + Psest_0278 0.78 -0.5 293,913 + Psest_0278 0.78 -0.7 293,913 + Psest_0278 0.78 -0.2 293,913 + Psest_0278 0.78 -0.3 293,914 - Psest_0278 0.78 +0.3 293,914 - Psest_0278 0.78 -1.8 293,914 - Psest_0278 0.78 -0.7 293,914 - Psest_0278 0.78 -0.8 293,914 - Psest_0278 0.78 -1.7 293,914 - Psest_0278 0.78 -0.5 293,914 - Psest_0278 0.78 -0.1 293,914 - Psest_0278 0.78 -1.3 293,925 + Psest_0278 0.80 +1.9 293,926 - Psest_0278 0.81 -1.9 293,926 - Psest_0278 0.81 -1.4 293,926 - Psest_0278 0.81 -3.1 294,007 + -0.9 294,007 + -0.3 294,007 + +0.5 294,008 - -0.6 294,008 - -1.1 294,013 + -0.9 294,059 + -2.2 294,060 - -0.8 294,218 + Psest_0279 0.31 +0.7 294,218 + Psest_0279 0.31 -2.7 294,219 - Psest_0279 0.31 -2.9 294,219 - Psest_0279 0.31 -2.6 294,219 - Psest_0279 0.31 -1.3 294,219 - Psest_0279 0.31 -2.9 294,219 - Psest_0279 0.31 -3.9 294,219 - Psest_0279 0.31 -3.3 294,219 - Psest_0279 0.31 -2.0 294,227 + Psest_0279 0.32 -2.8 294,227 + Psest_0279 0.32 -2.2 294,228 - Psest_0279 0.32 -4.1 294,228 - Psest_0279 0.32 -0.5 294,644 + -0.9 294,644 + +0.2 294,645 - +1.2 294,646 + -0.0 294,646 + -0.7 294,646 + -1.4 294,646 + -0.5 294,646 + +0.8 294,646 + +0.3 294,647 - -1.3 294,647 - +0.3 294,665 + -3.0 294,743 + -1.8 294,744 - -4.7 294,905 + Psest_0280 0.23 -1.7 294,906 - Psest_0280 0.23 -3.6 294,906 - Psest_0280 0.23 -2.2 294,906 - Psest_0280 0.23 -1.7 294,932 + Psest_0280 0.25 -3.4 294,933 - Psest_0280 0.25 -2.0 294,933 - Psest_0280 0.25 -2.0 294,933 - Psest_0280 0.25 -1.5 294,933 - Psest_0280 0.25 -3.7 294,933 - Psest_0280 0.25 -3.0 294,933 - Psest_0280 0.25 -2.9 294,937 - Psest_0280 0.26 -2.8 294,937 - Psest_0280 0.26 -2.5 294,937 - Psest_0280 0.26 -3.7 294,983 + Psest_0280 0.30 -2.7 294,984 - Psest_0280 0.30 -2.0 294,984 - Psest_0280 0.30 -6.0 295,019 + Psest_0280 0.33 -2.3 295,019 + Psest_0280 0.33 -2.2 295,019 + Psest_0280 0.33 -3.0 295,019 + Psest_0280 0.33 -2.9 295,020 - Psest_0280 0.33 -2.8 295,082 + Psest_0280 0.39 -0.4 295,083 - Psest_0280 0.39 -1.7 295,083 - Psest_0280 0.39 -1.4 295,419 - Psest_0280 0.68 -1.2 295,512 + Psest_0280 0.76 -3.3 295,512 + Psest_0280 0.76 -3.1 295,512 + Psest_0280 0.76 -1.4 295,513 - Psest_0280 0.76 -1.9 295,513 - Psest_0280 0.76 -0.3 295,513 - Psest_0280 0.76 -0.1 295,516 + Psest_0280 0.77 -4.1 295,516 + Psest_0280 0.77 -4.2 295,516 + Psest_0280 0.77 -1.2 295,516 + Psest_0280 0.77 -4.5 295,516 + Psest_0280 0.77 -1.8 295,516 + Psest_0280 0.77 -1.9 295,516 + Psest_0280 0.77 -2.7 295,516 + Psest_0280 0.77 -4.3 295,516 + Psest_0280 0.77 -3.8 295,516 + Psest_0280 0.77 -2.2 295,516 + Psest_0280 0.77 -3.4 295,517 - Psest_0280 0.77 -2.3 295,517 - Psest_0280 0.77 -1.9 295,517 - Psest_0280 0.77 -3.6 295,517 - Psest_0280 0.77 -0.0 295,517 - Psest_0280 0.77 -1.1 295,560 + Psest_0280 0.80 -1.7
Or see this region's nucleotide sequence