Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2763

Experiment: Def Carbenicillin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2761 and Psest_2762 are separated by 153 nucleotidesPsest_2762 and Psest_2763 are separated by 374 nucleotidesPsest_2763 and Psest_2764 overlap by 22 nucleotidesPsest_2764 and Psest_2765 are separated by 86 nucleotides Psest_2761: Psest_2761 - Uncharacterized protein with SCP/PR1 domains, at 2,949,500 to 2,950,336 _2761 Psest_2762: Psest_2762 - hypothetical protein, at 2,950,490 to 2,950,891 _2762 Psest_2763: Psest_2763 - Cellobiose phosphorylase, at 2,951,266 to 2,959,797 _2763 Psest_2764: Psest_2764 - hypothetical protein, at 2,959,776 to 2,959,889 _2764 Psest_2765: Psest_2765 - Collagenase and related proteases, at 2,959,976 to 2,961,976 _2765 Position (kb) 2951 2952 2953 2954 2955 2956 2957 2958 2959 2960Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2950.682 kb on + strand, within Psest_2762at 2950.682 kb on + strand, within Psest_2762at 2950.682 kb on + strand, within Psest_2762at 2950.683 kb on - strand, within Psest_2762at 2950.683 kb on - strand, within Psest_2762at 2950.683 kb on - strand, within Psest_2762at 2950.990 kb on + strandat 2950.991 kb on - strandat 2951.000 kb on + strandat 2951.000 kb on + strandat 2951.000 kb on + strandat 2951.000 kb on + strandat 2951.007 kb on + strandat 2951.139 kb on - strandat 2951.240 kb on + strandat 2951.551 kb on + strandat 2951.551 kb on + strandat 2951.551 kb on + strandat 2951.551 kb on + strandat 2951.552 kb on - strandat 2952.153 kb on - strand, within Psest_2763at 2952.402 kb on - strand, within Psest_2763at 2952.539 kb on + strand, within Psest_2763at 2952.941 kb on - strand, within Psest_2763at 2952.994 kb on + strand, within Psest_2763at 2952.994 kb on + strand, within Psest_2763at 2952.995 kb on - strand, within Psest_2763at 2952.995 kb on - strand, within Psest_2763at 2952.995 kb on - strand, within Psest_2763at 2952.995 kb on - strand, within Psest_2763at 2952.995 kb on - strand, within Psest_2763at 2952.995 kb on - strand, within Psest_2763at 2953.090 kb on + strand, within Psest_2763at 2953.090 kb on + strand, within Psest_2763at 2953.090 kb on + strand, within Psest_2763at 2953.090 kb on + strand, within Psest_2763at 2953.091 kb on - strand, within Psest_2763at 2953.091 kb on - strand, within Psest_2763at 2953.091 kb on - strand, within Psest_2763at 2953.091 kb on - strand, within Psest_2763at 2953.138 kb on + strand, within Psest_2763at 2953.138 kb on + strand, within Psest_2763at 2953.139 kb on - strand, within Psest_2763at 2953.139 kb on - strand, within Psest_2763at 2953.325 kb on - strand, within Psest_2763at 2953.325 kb on - strand, within Psest_2763at 2953.387 kb on + strandat 2953.388 kb on - strand, within Psest_2763at 2953.432 kb on + strand, within Psest_2763at 2953.432 kb on + strand, within Psest_2763at 2953.432 kb on + strand, within Psest_2763at 2953.432 kb on + strand, within Psest_2763at 2953.433 kb on - strand, within Psest_2763at 2953.433 kb on - strand, within Psest_2763at 2953.433 kb on - strand, within Psest_2763at 2953.433 kb on - strand, within Psest_2763at 2953.433 kb on - strand, within Psest_2763at 2953.433 kb on - strand, within Psest_2763at 2953.433 kb on - strand, within Psest_2763at 2953.433 kb on - strand, within Psest_2763at 2953.433 kb on - strand, within Psest_2763at 2953.433 kb on - strand, within Psest_2763at 2953.433 kb on - strand, within Psest_2763at 2953.433 kb on - strand, within Psest_2763at 2953.433 kb on - strand, within Psest_2763at 2953.581 kb on - strand, within Psest_2763at 2954.391 kb on + strand, within Psest_2763at 2954.416 kb on + strand, within Psest_2763at 2954.417 kb on - strandat 2954.582 kb on - strand, within Psest_2763at 2954.586 kb on - strand, within Psest_2763at 2955.292 kb on + strand, within Psest_2763at 2955.379 kb on + strand, within Psest_2763at 2955.451 kb on + strand, within Psest_2763at 2955.451 kb on + strand, within Psest_2763at 2955.451 kb on + strand, within Psest_2763at 2955.451 kb on + strand, within Psest_2763at 2955.457 kb on + strand, within Psest_2763at 2955.458 kb on - strand, within Psest_2763at 2955.577 kb on + strand, within Psest_2763at 2955.577 kb on + strand, within Psest_2763at 2955.577 kb on + strand, within Psest_2763at 2955.578 kb on - strand, within Psest_2763at 2955.688 kb on + strand, within Psest_2763at 2955.688 kb on + strand, within Psest_2763at 2955.688 kb on + strand, within Psest_2763at 2955.689 kb on - strand, within Psest_2763at 2955.689 kb on - strand, within Psest_2763at 2955.689 kb on - strand, within Psest_2763at 2955.689 kb on - strand, within Psest_2763at 2955.689 kb on - strand, within Psest_2763at 2955.689 kb on - strand, within Psest_2763at 2955.689 kb on - strand, within Psest_2763at 2956.217 kb on + strand, within Psest_2763at 2956.217 kb on + strand, within Psest_2763at 2956.217 kb on + strand, within Psest_2763at 2956.217 kb on + strand, within Psest_2763at 2956.217 kb on + strand, within Psest_2763at 2956.218 kb on - strand, within Psest_2763at 2956.218 kb on - strand, within Psest_2763at 2956.218 kb on - strand, within Psest_2763at 2956.218 kb on - strand, within Psest_2763at 2956.218 kb on - strand, within Psest_2763at 2956.384 kb on + strand, within Psest_2763at 2956.385 kb on - strand, within Psest_2763at 2956.502 kb on - strand, within Psest_2763at 2956.852 kb on + strand, within Psest_2763at 2957.080 kb on + strand, within Psest_2763at 2957.081 kb on - strand, within Psest_2763at 2957.081 kb on - strand, within Psest_2763at 2957.173 kb on + strand, within Psest_2763at 2957.173 kb on + strand, within Psest_2763at 2957.173 kb on + strand, within Psest_2763at 2957.173 kb on + strand, within Psest_2763at 2957.173 kb on + strand, within Psest_2763at 2957.173 kb on + strand, within Psest_2763at 2957.173 kb on + strand, within Psest_2763at 2957.173 kb on + strand, within Psest_2763at 2957.173 kb on + strand, within Psest_2763at 2957.173 kb on + strand, within Psest_2763at 2957.173 kb on + strand, within Psest_2763at 2957.173 kb on + strand, within Psest_2763at 2957.173 kb on + strand, within Psest_2763at 2957.173 kb on + strand, within Psest_2763at 2957.173 kb on + strand, within Psest_2763at 2957.174 kb on - strand, within Psest_2763at 2957.174 kb on - strand, within Psest_2763at 2957.174 kb on - strand, within Psest_2763at 2957.174 kb on - strand, within Psest_2763at 2957.174 kb on - strand, within Psest_2763at 2957.174 kb on - strand, within Psest_2763at 2957.174 kb on - strand, within Psest_2763at 2957.174 kb on - strand, within Psest_2763at 2957.174 kb on - strand, within Psest_2763at 2957.174 kb on - strand, within Psest_2763at 2957.174 kb on - strand, within Psest_2763at 2957.174 kb on - strand, within Psest_2763at 2957.174 kb on - strand, within Psest_2763at 2957.174 kb on - strand, within Psest_2763at 2957.174 kb on - strand, within Psest_2763at 2957.174 kb on - strand, within Psest_2763at 2957.174 kb on - strand, within Psest_2763at 2957.174 kb on - strand, within Psest_2763at 2957.174 kb on - strand, within Psest_2763at 2957.192 kb on + strand, within Psest_2763at 2957.432 kb on - strand, within Psest_2763at 2957.617 kb on + strand, within Psest_2763at 2957.617 kb on + strand, within Psest_2763at 2957.617 kb on + strand, within Psest_2763at 2957.617 kb on + strand, within Psest_2763at 2957.617 kb on + strand, within Psest_2763at 2957.617 kb on + strand, within Psest_2763at 2957.617 kb on + strand, within Psest_2763at 2957.617 kb on + strand, within Psest_2763at 2957.618 kb on - strand, within Psest_2763at 2957.618 kb on - strand, within Psest_2763at 2957.618 kb on - strand, within Psest_2763at 2957.618 kb on - strand, within Psest_2763at 2957.618 kb on - strand, within Psest_2763at 2957.618 kb on - strand, within Psest_2763at 2957.618 kb on - strand, within Psest_2763at 2957.687 kb on - strand, within Psest_2763at 2957.761 kb on + strand, within Psest_2763at 2957.762 kb on - strand, within Psest_2763at 2957.762 kb on - strand, within Psest_2763at 2957.762 kb on - strand, within Psest_2763at 2958.356 kb on - strand, within Psest_2763at 2958.397 kb on + strand, within Psest_2763at 2958.616 kb on + strand, within Psest_2763at 2958.616 kb on + strand, within Psest_2763at 2958.616 kb on + strand, within Psest_2763at 2958.616 kb on + strand, within Psest_2763at 2958.616 kb on + strand, within Psest_2763at 2958.617 kb on - strand, within Psest_2763at 2958.617 kb on - strand, within Psest_2763at 2958.617 kb on - strand, within Psest_2763at 2958.617 kb on - strand, within Psest_2763at 2958.617 kb on - strand, within Psest_2763at 2959.258 kb on + strandat 2959.259 kb on - strandat 2959.259 kb on - strandat 2959.303 kb on + strandat 2959.304 kb on - strandat 2959.429 kb on + strandat 2959.429 kb on + strandat 2959.429 kb on + strandat 2959.445 kb on - strandat 2959.466 kb on - strandat 2959.507 kb on + strandat 2959.507 kb on + strandat 2959.508 kb on - strandat 2959.795 kb on + strandat 2959.795 kb on + strandat 2959.796 kb on - strandat 2959.822 kb on + strand, within Psest_2764at 2959.870 kb on + strand, within Psest_2764at 2959.937 kb on + strandat 2960.069 kb on + strandat 2960.070 kb on - strandat 2960.070 kb on - strandat 2960.070 kb on - strandat 2960.070 kb on - strandat 2960.070 kb on - strandat 2960.070 kb on - strandat 2960.070 kb on - strandat 2960.070 kb on - strandat 2960.070 kb on - strandat 2960.240 kb on + strand, within Psest_2765at 2960.241 kb on - strand, within Psest_2765at 2960.241 kb on - strand, within Psest_2765at 2960.709 kb on - strand, within Psest_2765at 2960.709 kb on - strand, within Psest_2765at 2960.723 kb on + strand, within Psest_2765at 2960.723 kb on + strand, within Psest_2765at 2960.724 kb on - strand, within Psest_2765at 2960.724 kb on - strand, within Psest_2765at 2960.724 kb on - strand, within Psest_2765at 2960.724 kb on - strand, within Psest_2765at 2960.744 kb on + strand, within Psest_2765at 2960.744 kb on + strand, within Psest_2765at 2960.745 kb on - strand, within Psest_2765at 2960.747 kb on + strand, within Psest_2765

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml
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2,950,682 + Psest_2762 0.48 -1.2
2,950,682 + Psest_2762 0.48 -0.7
2,950,682 + Psest_2762 0.48 -0.6
2,950,683 - Psest_2762 0.48 +0.8
2,950,683 - Psest_2762 0.48 -0.9
2,950,683 - Psest_2762 0.48 -1.2
2,950,990 + -1.4
2,950,991 - -0.7
2,951,000 + -0.0
2,951,000 + +1.6
2,951,000 + +0.6
2,951,000 + +1.3
2,951,007 + +1.8
2,951,139 - +0.8
2,951,240 + -1.2
2,951,551 + -1.4
2,951,551 + -2.1
2,951,551 + -0.7
2,951,551 + +2.0
2,951,552 - +0.1
2,952,153 - Psest_2763 0.10 +0.3
2,952,402 - Psest_2763 0.13 -0.4
2,952,539 + Psest_2763 0.15 +0.5
2,952,941 - Psest_2763 0.20 +0.8
2,952,994 + Psest_2763 0.20 -1.1
2,952,994 + Psest_2763 0.20 -0.3
2,952,995 - Psest_2763 0.20 +2.0
2,952,995 - Psest_2763 0.20 +1.2
2,952,995 - Psest_2763 0.20 -1.0
2,952,995 - Psest_2763 0.20 +0.8
2,952,995 - Psest_2763 0.20 +0.5
2,952,995 - Psest_2763 0.20 +0.4
2,953,090 + Psest_2763 0.21 +0.1
2,953,090 + Psest_2763 0.21 -0.2
2,953,090 + Psest_2763 0.21 +0.5
2,953,090 + Psest_2763 0.21 -1.2
2,953,091 - Psest_2763 0.21 +0.2
2,953,091 - Psest_2763 0.21 +0.7
2,953,091 - Psest_2763 0.21 -0.2
2,953,091 - Psest_2763 0.21 -0.1
2,953,138 + Psest_2763 0.22 -2.4
2,953,138 + Psest_2763 0.22 +1.4
2,953,139 - Psest_2763 0.22 +1.8
2,953,139 - Psest_2763 0.22 +0.8
2,953,325 - Psest_2763 0.24 +1.7
2,953,325 - Psest_2763 0.24 +1.0
2,953,387 + +1.2
2,953,388 - Psest_2763 0.25 +0.2
2,953,432 + Psest_2763 0.25 -0.2
2,953,432 + Psest_2763 0.25 -0.1
2,953,432 + Psest_2763 0.25 +0.8
2,953,432 + Psest_2763 0.25 +1.2
2,953,433 - Psest_2763 0.25 +0.2
2,953,433 - Psest_2763 0.25 +1.0
2,953,433 - Psest_2763 0.25 +2.3
2,953,433 - Psest_2763 0.25 +2.1
2,953,433 - Psest_2763 0.25 +1.4
2,953,433 - Psest_2763 0.25 +2.5
2,953,433 - Psest_2763 0.25 +2.2
2,953,433 - Psest_2763 0.25 +0.5
2,953,433 - Psest_2763 0.25 +1.0
2,953,433 - Psest_2763 0.25 +0.6
2,953,433 - Psest_2763 0.25 +0.6
2,953,433 - Psest_2763 0.25 +1.7
2,953,433 - Psest_2763 0.25 +0.5
2,953,581 - Psest_2763 0.27 +0.8
2,954,391 + Psest_2763 0.37 +0.4
2,954,416 + Psest_2763 0.37 +0.8
2,954,417 - +0.8
2,954,582 - Psest_2763 0.39 +2.6
2,954,586 - Psest_2763 0.39 -0.3
2,955,292 + Psest_2763 0.47 -0.4
2,955,379 + Psest_2763 0.48 -0.4
2,955,451 + Psest_2763 0.49 -0.5
2,955,451 + Psest_2763 0.49 +0.4
2,955,451 + Psest_2763 0.49 -1.8
2,955,451 + Psest_2763 0.49 -0.2
2,955,457 + Psest_2763 0.49 -0.6
2,955,458 - Psest_2763 0.49 +3.2
2,955,577 + Psest_2763 0.51 +0.7
2,955,577 + Psest_2763 0.51 -1.3
2,955,577 + Psest_2763 0.51 -0.2
2,955,578 - Psest_2763 0.51 -0.3
2,955,688 + Psest_2763 0.52 -0.2
2,955,688 + Psest_2763 0.52 +0.4
2,955,688 + Psest_2763 0.52 +0.6
2,955,689 - Psest_2763 0.52 -0.3
2,955,689 - Psest_2763 0.52 +2.2
2,955,689 - Psest_2763 0.52 +0.3
2,955,689 - Psest_2763 0.52 +0.1
2,955,689 - Psest_2763 0.52 -0.0
2,955,689 - Psest_2763 0.52 -1.5
2,955,689 - Psest_2763 0.52 -0.2
2,956,217 + Psest_2763 0.58 +0.5
2,956,217 + Psest_2763 0.58 -2.4
2,956,217 + Psest_2763 0.58 -1.6
2,956,217 + Psest_2763 0.58 +0.6
2,956,217 + Psest_2763 0.58 +0.6
2,956,218 - Psest_2763 0.58 +1.8
2,956,218 - Psest_2763 0.58 +0.7
2,956,218 - Psest_2763 0.58 +1.0
2,956,218 - Psest_2763 0.58 -0.8
2,956,218 - Psest_2763 0.58 -1.2
2,956,384 + Psest_2763 0.60 +0.2
2,956,385 - Psest_2763 0.60 +1.0
2,956,502 - Psest_2763 0.61 +0.1
2,956,852 + Psest_2763 0.65 -1.4
2,957,080 + Psest_2763 0.68 +0.9
2,957,081 - Psest_2763 0.68 +0.9
2,957,081 - Psest_2763 0.68 +0.3
2,957,173 + Psest_2763 0.69 +0.3
2,957,173 + Psest_2763 0.69 -0.0
2,957,173 + Psest_2763 0.69 +1.5
2,957,173 + Psest_2763 0.69 -1.1
2,957,173 + Psest_2763 0.69 +0.8
2,957,173 + Psest_2763 0.69 -0.4
2,957,173 + Psest_2763 0.69 +1.3
2,957,173 + Psest_2763 0.69 -0.1
2,957,173 + Psest_2763 0.69 +0.5
2,957,173 + Psest_2763 0.69 -0.0
2,957,173 + Psest_2763 0.69 +0.1
2,957,173 + Psest_2763 0.69 +0.6
2,957,173 + Psest_2763 0.69 +0.6
2,957,173 + Psest_2763 0.69 +1.1
2,957,173 + Psest_2763 0.69 +0.2
2,957,174 - Psest_2763 0.69 +1.1
2,957,174 - Psest_2763 0.69 -0.8
2,957,174 - Psest_2763 0.69 +0.4
2,957,174 - Psest_2763 0.69 -0.9
2,957,174 - Psest_2763 0.69 -0.7
2,957,174 - Psest_2763 0.69 -0.1
2,957,174 - Psest_2763 0.69 -0.9
2,957,174 - Psest_2763 0.69 +2.5
2,957,174 - Psest_2763 0.69 +0.2
2,957,174 - Psest_2763 0.69 -0.9
2,957,174 - Psest_2763 0.69 +1.7
2,957,174 - Psest_2763 0.69 -0.0
2,957,174 - Psest_2763 0.69 +0.2
2,957,174 - Psest_2763 0.69 -0.6
2,957,174 - Psest_2763 0.69 -0.1
2,957,174 - Psest_2763 0.69 +0.8
2,957,174 - Psest_2763 0.69 -0.8
2,957,174 - Psest_2763 0.69 +0.3
2,957,174 - Psest_2763 0.69 +2.2
2,957,192 + Psest_2763 0.69 -1.0
2,957,432 - Psest_2763 0.72 +0.8
2,957,617 + Psest_2763 0.74 +0.6
2,957,617 + Psest_2763 0.74 -1.1
2,957,617 + Psest_2763 0.74 +0.8
2,957,617 + Psest_2763 0.74 -1.2
2,957,617 + Psest_2763 0.74 +1.1
2,957,617 + Psest_2763 0.74 +1.2
2,957,617 + Psest_2763 0.74 +0.2
2,957,617 + Psest_2763 0.74 +0.1
2,957,618 - Psest_2763 0.74 +1.1
2,957,618 - Psest_2763 0.74 +1.0
2,957,618 - Psest_2763 0.74 +1.3
2,957,618 - Psest_2763 0.74 -0.2
2,957,618 - Psest_2763 0.74 +0.8
2,957,618 - Psest_2763 0.74 +2.0
2,957,618 - Psest_2763 0.74 -0.9
2,957,687 - Psest_2763 0.75 +1.2
2,957,761 + Psest_2763 0.76 +0.5
2,957,762 - Psest_2763 0.76 +2.3
2,957,762 - Psest_2763 0.76 +1.1
2,957,762 - Psest_2763 0.76 +0.5
2,958,356 - Psest_2763 0.83 +1.1
2,958,397 + Psest_2763 0.84 +0.4
2,958,616 + Psest_2763 0.86 +0.8
2,958,616 + Psest_2763 0.86 +0.6
2,958,616 + Psest_2763 0.86 +0.9
2,958,616 + Psest_2763 0.86 +0.0
2,958,616 + Psest_2763 0.86 -0.1
2,958,617 - Psest_2763 0.86 +0.9
2,958,617 - Psest_2763 0.86 -1.3
2,958,617 - Psest_2763 0.86 +0.4
2,958,617 - Psest_2763 0.86 -0.3
2,958,617 - Psest_2763 0.86 +0.3
2,959,258 + +0.9
2,959,259 - -0.4
2,959,259 - +2.1
2,959,303 + +1.3
2,959,304 - +0.8
2,959,429 + +1.6
2,959,429 + +1.3
2,959,429 + +1.5
2,959,445 - -0.4
2,959,466 - +0.2
2,959,507 + +1.9
2,959,507 + +1.1
2,959,508 - +0.4
2,959,795 + +0.8
2,959,795 + +0.8
2,959,796 - +0.5
2,959,822 + Psest_2764 0.40 -1.4
2,959,870 + Psest_2764 0.82 -1.2
2,959,937 + -0.3
2,960,069 + -0.8
2,960,070 - +0.1
2,960,070 - -0.7
2,960,070 - +0.8
2,960,070 - -0.6
2,960,070 - +0.2
2,960,070 - +0.8
2,960,070 - +1.2
2,960,070 - -0.5
2,960,070 - +0.5
2,960,240 + Psest_2765 0.13 -0.5
2,960,241 - Psest_2765 0.13 +1.9
2,960,241 - Psest_2765 0.13 -1.0
2,960,709 - Psest_2765 0.37 +0.2
2,960,709 - Psest_2765 0.37 +0.0
2,960,723 + Psest_2765 0.37 -2.1
2,960,723 + Psest_2765 0.37 -1.2
2,960,724 - Psest_2765 0.37 +0.6
2,960,724 - Psest_2765 0.37 -0.4
2,960,724 - Psest_2765 0.37 +1.0
2,960,724 - Psest_2765 0.37 -1.0
2,960,744 + Psest_2765 0.38 -0.5
2,960,744 + Psest_2765 0.38 -1.0
2,960,745 - Psest_2765 0.38 -1.0
2,960,747 + Psest_2765 0.39 -0.6

Or see this region's nucleotide sequence