Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2761 and Psest_2762 are separated by 153 nucleotides Psest_2762 and Psest_2763 are separated by 374 nucleotides Psest_2763 and Psest_2764 overlap by 22 nucleotides Psest_2764 and Psest_2765 are separated by 86 nucleotides
Psest_2761: Psest_2761 - Uncharacterized protein with SCP/PR1 domains, at 2,949,500 to 2,950,336
_2761
Psest_2762: Psest_2762 - hypothetical protein, at 2,950,490 to 2,950,891
_2762
Psest_2763: Psest_2763 - Cellobiose phosphorylase, at 2,951,266 to 2,959,797
_2763
Psest_2764: Psest_2764 - hypothetical protein, at 2,959,776 to 2,959,889
_2764
Psest_2765: Psest_2765 - Collagenase and related proteases, at 2,959,976 to 2,961,976
_2765
Position (kb)
2951
2952
2953
2954
2955
2956
2957
2958
2959
2960 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2950.682 kb on + strand, within Psest_2762 at 2950.682 kb on + strand, within Psest_2762 at 2950.682 kb on + strand, within Psest_2762 at 2950.683 kb on - strand, within Psest_2762 at 2950.683 kb on - strand, within Psest_2762 at 2950.683 kb on - strand, within Psest_2762 at 2950.990 kb on + strand at 2950.991 kb on - strand at 2951.000 kb on + strand at 2951.000 kb on + strand at 2951.000 kb on + strand at 2951.000 kb on + strand at 2951.007 kb on + strand at 2951.139 kb on - strand at 2951.240 kb on + strand at 2951.551 kb on + strand at 2951.551 kb on + strand at 2951.551 kb on + strand at 2951.551 kb on + strand at 2951.552 kb on - strand at 2952.153 kb on - strand, within Psest_2763 at 2952.402 kb on - strand, within Psest_2763 at 2952.539 kb on + strand, within Psest_2763 at 2952.941 kb on - strand, within Psest_2763 at 2952.994 kb on + strand, within Psest_2763 at 2952.994 kb on + strand, within Psest_2763 at 2952.995 kb on - strand, within Psest_2763 at 2952.995 kb on - strand, within Psest_2763 at 2952.995 kb on - strand, within Psest_2763 at 2952.995 kb on - strand, within Psest_2763 at 2952.995 kb on - strand, within Psest_2763 at 2952.995 kb on - strand, within Psest_2763 at 2953.090 kb on + strand, within Psest_2763 at 2953.090 kb on + strand, within Psest_2763 at 2953.090 kb on + strand, within Psest_2763 at 2953.090 kb on + strand, within Psest_2763 at 2953.091 kb on - strand, within Psest_2763 at 2953.091 kb on - strand, within Psest_2763 at 2953.091 kb on - strand, within Psest_2763 at 2953.091 kb on - strand, within Psest_2763 at 2953.138 kb on + strand, within Psest_2763 at 2953.138 kb on + strand, within Psest_2763 at 2953.139 kb on - strand, within Psest_2763 at 2953.139 kb on - strand, within Psest_2763 at 2953.325 kb on - strand, within Psest_2763 at 2953.325 kb on - strand, within Psest_2763 at 2953.387 kb on + strand at 2953.388 kb on - strand, within Psest_2763 at 2953.432 kb on + strand, within Psest_2763 at 2953.432 kb on + strand, within Psest_2763 at 2953.432 kb on + strand, within Psest_2763 at 2953.432 kb on + strand, within Psest_2763 at 2953.433 kb on - strand, within Psest_2763 at 2953.433 kb on - strand, within Psest_2763 at 2953.433 kb on - strand, within Psest_2763 at 2953.433 kb on - strand, within Psest_2763 at 2953.433 kb on - strand, within Psest_2763 at 2953.433 kb on - strand, within Psest_2763 at 2953.433 kb on - strand, within Psest_2763 at 2953.433 kb on - strand, within Psest_2763 at 2953.433 kb on - strand, within Psest_2763 at 2953.433 kb on - strand, within Psest_2763 at 2953.433 kb on - strand, within Psest_2763 at 2953.433 kb on - strand, within Psest_2763 at 2953.433 kb on - strand, within Psest_2763 at 2953.581 kb on - strand, within Psest_2763 at 2954.391 kb on + strand, within Psest_2763 at 2954.416 kb on + strand, within Psest_2763 at 2954.417 kb on - strand at 2954.582 kb on - strand, within Psest_2763 at 2954.586 kb on - strand, within Psest_2763 at 2955.292 kb on + strand, within Psest_2763 at 2955.379 kb on + strand, within Psest_2763 at 2955.451 kb on + strand, within Psest_2763 at 2955.451 kb on + strand, within Psest_2763 at 2955.451 kb on + strand, within Psest_2763 at 2955.451 kb on + strand, within Psest_2763 at 2955.457 kb on + strand, within Psest_2763 at 2955.458 kb on - strand, within Psest_2763 at 2955.577 kb on + strand, within Psest_2763 at 2955.577 kb on + strand, within Psest_2763 at 2955.577 kb on + strand, within Psest_2763 at 2955.578 kb on - strand, within Psest_2763 at 2955.688 kb on + strand, within Psest_2763 at 2955.688 kb on + strand, within Psest_2763 at 2955.688 kb on + strand, within Psest_2763 at 2955.689 kb on - strand, within Psest_2763 at 2955.689 kb on - strand, within Psest_2763 at 2955.689 kb on - strand, within Psest_2763 at 2955.689 kb on - strand, within Psest_2763 at 2955.689 kb on - strand, within Psest_2763 at 2955.689 kb on - strand, within Psest_2763 at 2955.689 kb on - strand, within Psest_2763 at 2956.217 kb on + strand, within Psest_2763 at 2956.217 kb on + strand, within Psest_2763 at 2956.217 kb on + strand, within Psest_2763 at 2956.217 kb on + strand, within Psest_2763 at 2956.217 kb on + strand, within Psest_2763 at 2956.218 kb on - strand, within Psest_2763 at 2956.218 kb on - strand, within Psest_2763 at 2956.218 kb on - strand, within Psest_2763 at 2956.218 kb on - strand, within Psest_2763 at 2956.218 kb on - strand, within Psest_2763 at 2956.384 kb on + strand, within Psest_2763 at 2956.385 kb on - strand, within Psest_2763 at 2956.502 kb on - strand, within Psest_2763 at 2956.852 kb on + strand, within Psest_2763 at 2957.080 kb on + strand, within Psest_2763 at 2957.081 kb on - strand, within Psest_2763 at 2957.081 kb on - strand, within Psest_2763 at 2957.173 kb on + strand, within Psest_2763 at 2957.173 kb on + strand, within Psest_2763 at 2957.173 kb on + strand, within Psest_2763 at 2957.173 kb on + strand, within Psest_2763 at 2957.173 kb on + strand, within Psest_2763 at 2957.173 kb on + strand, within Psest_2763 at 2957.173 kb on + strand, within Psest_2763 at 2957.173 kb on + strand, within Psest_2763 at 2957.173 kb on + strand, within Psest_2763 at 2957.173 kb on + strand, within Psest_2763 at 2957.173 kb on + strand, within Psest_2763 at 2957.173 kb on + strand, within Psest_2763 at 2957.173 kb on + strand, within Psest_2763 at 2957.173 kb on + strand, within Psest_2763 at 2957.173 kb on + strand, within Psest_2763 at 2957.174 kb on - strand, within Psest_2763 at 2957.174 kb on - strand, within Psest_2763 at 2957.174 kb on - strand, within Psest_2763 at 2957.174 kb on - strand, within Psest_2763 at 2957.174 kb on - strand, within Psest_2763 at 2957.174 kb on - strand, within Psest_2763 at 2957.174 kb on - strand, within Psest_2763 at 2957.174 kb on - strand, within Psest_2763 at 2957.174 kb on - strand, within Psest_2763 at 2957.174 kb on - strand, within Psest_2763 at 2957.174 kb on - strand, within Psest_2763 at 2957.174 kb on - strand, within Psest_2763 at 2957.174 kb on - strand, within Psest_2763 at 2957.174 kb on - strand, within Psest_2763 at 2957.174 kb on - strand, within Psest_2763 at 2957.174 kb on - strand, within Psest_2763 at 2957.174 kb on - strand, within Psest_2763 at 2957.174 kb on - strand, within Psest_2763 at 2957.174 kb on - strand, within Psest_2763 at 2957.192 kb on + strand, within Psest_2763 at 2957.432 kb on - strand, within Psest_2763 at 2957.617 kb on + strand, within Psest_2763 at 2957.617 kb on + strand, within Psest_2763 at 2957.617 kb on + strand, within Psest_2763 at 2957.617 kb on + strand, within Psest_2763 at 2957.617 kb on + strand, within Psest_2763 at 2957.617 kb on + strand, within Psest_2763 at 2957.617 kb on + strand, within Psest_2763 at 2957.617 kb on + strand, within Psest_2763 at 2957.618 kb on - strand, within Psest_2763 at 2957.618 kb on - strand, within Psest_2763 at 2957.618 kb on - strand, within Psest_2763 at 2957.618 kb on - strand, within Psest_2763 at 2957.618 kb on - strand, within Psest_2763 at 2957.618 kb on - strand, within Psest_2763 at 2957.618 kb on - strand, within Psest_2763 at 2957.687 kb on - strand, within Psest_2763 at 2957.761 kb on + strand, within Psest_2763 at 2957.762 kb on - strand, within Psest_2763 at 2957.762 kb on - strand, within Psest_2763 at 2957.762 kb on - strand, within Psest_2763 at 2958.356 kb on - strand, within Psest_2763 at 2958.397 kb on + strand, within Psest_2763 at 2958.616 kb on + strand, within Psest_2763 at 2958.616 kb on + strand, within Psest_2763 at 2958.616 kb on + strand, within Psest_2763 at 2958.616 kb on + strand, within Psest_2763 at 2958.616 kb on + strand, within Psest_2763 at 2958.617 kb on - strand, within Psest_2763 at 2958.617 kb on - strand, within Psest_2763 at 2958.617 kb on - strand, within Psest_2763 at 2958.617 kb on - strand, within Psest_2763 at 2958.617 kb on - strand, within Psest_2763 at 2959.258 kb on + strand at 2959.259 kb on - strand at 2959.259 kb on - strand at 2959.303 kb on + strand at 2959.304 kb on - strand at 2959.429 kb on + strand at 2959.429 kb on + strand at 2959.429 kb on + strand at 2959.445 kb on - strand at 2959.466 kb on - strand at 2959.507 kb on + strand at 2959.507 kb on + strand at 2959.508 kb on - strand at 2959.795 kb on + strand at 2959.795 kb on + strand at 2959.796 kb on - strand at 2959.822 kb on + strand, within Psest_2764 at 2959.870 kb on + strand, within Psest_2764 at 2959.937 kb on + strand at 2960.069 kb on + strand at 2960.070 kb on - strand at 2960.070 kb on - strand at 2960.070 kb on - strand at 2960.070 kb on - strand at 2960.070 kb on - strand at 2960.070 kb on - strand at 2960.070 kb on - strand at 2960.070 kb on - strand at 2960.070 kb on - strand at 2960.240 kb on + strand, within Psest_2765 at 2960.241 kb on - strand, within Psest_2765 at 2960.241 kb on - strand, within Psest_2765 at 2960.709 kb on - strand, within Psest_2765 at 2960.709 kb on - strand, within Psest_2765 at 2960.723 kb on + strand, within Psest_2765 at 2960.723 kb on + strand, within Psest_2765 at 2960.724 kb on - strand, within Psest_2765 at 2960.724 kb on - strand, within Psest_2765 at 2960.724 kb on - strand, within Psest_2765 at 2960.724 kb on - strand, within Psest_2765 at 2960.744 kb on + strand, within Psest_2765 at 2960.744 kb on + strand, within Psest_2765 at 2960.745 kb on - strand, within Psest_2765 at 2960.747 kb on + strand, within Psest_2765
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 2,950,682 + Psest_2762 0.48 -1.2 2,950,682 + Psest_2762 0.48 -0.7 2,950,682 + Psest_2762 0.48 -0.6 2,950,683 - Psest_2762 0.48 +0.8 2,950,683 - Psest_2762 0.48 -0.9 2,950,683 - Psest_2762 0.48 -1.2 2,950,990 + -1.4 2,950,991 - -0.7 2,951,000 + -0.0 2,951,000 + +1.6 2,951,000 + +0.6 2,951,000 + +1.3 2,951,007 + +1.8 2,951,139 - +0.8 2,951,240 + -1.2 2,951,551 + -1.4 2,951,551 + -2.1 2,951,551 + -0.7 2,951,551 + +2.0 2,951,552 - +0.1 2,952,153 - Psest_2763 0.10 +0.3 2,952,402 - Psest_2763 0.13 -0.4 2,952,539 + Psest_2763 0.15 +0.5 2,952,941 - Psest_2763 0.20 +0.8 2,952,994 + Psest_2763 0.20 -1.1 2,952,994 + Psest_2763 0.20 -0.3 2,952,995 - Psest_2763 0.20 +2.0 2,952,995 - Psest_2763 0.20 +1.2 2,952,995 - Psest_2763 0.20 -1.0 2,952,995 - Psest_2763 0.20 +0.8 2,952,995 - Psest_2763 0.20 +0.5 2,952,995 - Psest_2763 0.20 +0.4 2,953,090 + Psest_2763 0.21 +0.1 2,953,090 + Psest_2763 0.21 -0.2 2,953,090 + Psest_2763 0.21 +0.5 2,953,090 + Psest_2763 0.21 -1.2 2,953,091 - Psest_2763 0.21 +0.2 2,953,091 - Psest_2763 0.21 +0.7 2,953,091 - Psest_2763 0.21 -0.2 2,953,091 - Psest_2763 0.21 -0.1 2,953,138 + Psest_2763 0.22 -2.4 2,953,138 + Psest_2763 0.22 +1.4 2,953,139 - Psest_2763 0.22 +1.8 2,953,139 - Psest_2763 0.22 +0.8 2,953,325 - Psest_2763 0.24 +1.7 2,953,325 - Psest_2763 0.24 +1.0 2,953,387 + +1.2 2,953,388 - Psest_2763 0.25 +0.2 2,953,432 + Psest_2763 0.25 -0.2 2,953,432 + Psest_2763 0.25 -0.1 2,953,432 + Psest_2763 0.25 +0.8 2,953,432 + Psest_2763 0.25 +1.2 2,953,433 - Psest_2763 0.25 +0.2 2,953,433 - Psest_2763 0.25 +1.0 2,953,433 - Psest_2763 0.25 +2.3 2,953,433 - Psest_2763 0.25 +2.1 2,953,433 - Psest_2763 0.25 +1.4 2,953,433 - Psest_2763 0.25 +2.5 2,953,433 - Psest_2763 0.25 +2.2 2,953,433 - Psest_2763 0.25 +0.5 2,953,433 - Psest_2763 0.25 +1.0 2,953,433 - Psest_2763 0.25 +0.6 2,953,433 - Psest_2763 0.25 +0.6 2,953,433 - Psest_2763 0.25 +1.7 2,953,433 - Psest_2763 0.25 +0.5 2,953,581 - Psest_2763 0.27 +0.8 2,954,391 + Psest_2763 0.37 +0.4 2,954,416 + Psest_2763 0.37 +0.8 2,954,417 - +0.8 2,954,582 - Psest_2763 0.39 +2.6 2,954,586 - Psest_2763 0.39 -0.3 2,955,292 + Psest_2763 0.47 -0.4 2,955,379 + Psest_2763 0.48 -0.4 2,955,451 + Psest_2763 0.49 -0.5 2,955,451 + Psest_2763 0.49 +0.4 2,955,451 + Psest_2763 0.49 -1.8 2,955,451 + Psest_2763 0.49 -0.2 2,955,457 + Psest_2763 0.49 -0.6 2,955,458 - Psest_2763 0.49 +3.2 2,955,577 + Psest_2763 0.51 +0.7 2,955,577 + Psest_2763 0.51 -1.3 2,955,577 + Psest_2763 0.51 -0.2 2,955,578 - Psest_2763 0.51 -0.3 2,955,688 + Psest_2763 0.52 -0.2 2,955,688 + Psest_2763 0.52 +0.4 2,955,688 + Psest_2763 0.52 +0.6 2,955,689 - Psest_2763 0.52 -0.3 2,955,689 - Psest_2763 0.52 +2.2 2,955,689 - Psest_2763 0.52 +0.3 2,955,689 - Psest_2763 0.52 +0.1 2,955,689 - Psest_2763 0.52 -0.0 2,955,689 - Psest_2763 0.52 -1.5 2,955,689 - Psest_2763 0.52 -0.2 2,956,217 + Psest_2763 0.58 +0.5 2,956,217 + Psest_2763 0.58 -2.4 2,956,217 + Psest_2763 0.58 -1.6 2,956,217 + Psest_2763 0.58 +0.6 2,956,217 + Psest_2763 0.58 +0.6 2,956,218 - Psest_2763 0.58 +1.8 2,956,218 - Psest_2763 0.58 +0.7 2,956,218 - Psest_2763 0.58 +1.0 2,956,218 - Psest_2763 0.58 -0.8 2,956,218 - Psest_2763 0.58 -1.2 2,956,384 + Psest_2763 0.60 +0.2 2,956,385 - Psest_2763 0.60 +1.0 2,956,502 - Psest_2763 0.61 +0.1 2,956,852 + Psest_2763 0.65 -1.4 2,957,080 + Psest_2763 0.68 +0.9 2,957,081 - Psest_2763 0.68 +0.9 2,957,081 - Psest_2763 0.68 +0.3 2,957,173 + Psest_2763 0.69 +0.3 2,957,173 + Psest_2763 0.69 -0.0 2,957,173 + Psest_2763 0.69 +1.5 2,957,173 + Psest_2763 0.69 -1.1 2,957,173 + Psest_2763 0.69 +0.8 2,957,173 + Psest_2763 0.69 -0.4 2,957,173 + Psest_2763 0.69 +1.3 2,957,173 + Psest_2763 0.69 -0.1 2,957,173 + Psest_2763 0.69 +0.5 2,957,173 + Psest_2763 0.69 -0.0 2,957,173 + Psest_2763 0.69 +0.1 2,957,173 + Psest_2763 0.69 +0.6 2,957,173 + Psest_2763 0.69 +0.6 2,957,173 + Psest_2763 0.69 +1.1 2,957,173 + Psest_2763 0.69 +0.2 2,957,174 - Psest_2763 0.69 +1.1 2,957,174 - Psest_2763 0.69 -0.8 2,957,174 - Psest_2763 0.69 +0.4 2,957,174 - Psest_2763 0.69 -0.9 2,957,174 - Psest_2763 0.69 -0.7 2,957,174 - Psest_2763 0.69 -0.1 2,957,174 - Psest_2763 0.69 -0.9 2,957,174 - Psest_2763 0.69 +2.5 2,957,174 - Psest_2763 0.69 +0.2 2,957,174 - Psest_2763 0.69 -0.9 2,957,174 - Psest_2763 0.69 +1.7 2,957,174 - Psest_2763 0.69 -0.0 2,957,174 - Psest_2763 0.69 +0.2 2,957,174 - Psest_2763 0.69 -0.6 2,957,174 - Psest_2763 0.69 -0.1 2,957,174 - Psest_2763 0.69 +0.8 2,957,174 - Psest_2763 0.69 -0.8 2,957,174 - Psest_2763 0.69 +0.3 2,957,174 - Psest_2763 0.69 +2.2 2,957,192 + Psest_2763 0.69 -1.0 2,957,432 - Psest_2763 0.72 +0.8 2,957,617 + Psest_2763 0.74 +0.6 2,957,617 + Psest_2763 0.74 -1.1 2,957,617 + Psest_2763 0.74 +0.8 2,957,617 + Psest_2763 0.74 -1.2 2,957,617 + Psest_2763 0.74 +1.1 2,957,617 + Psest_2763 0.74 +1.2 2,957,617 + Psest_2763 0.74 +0.2 2,957,617 + Psest_2763 0.74 +0.1 2,957,618 - Psest_2763 0.74 +1.1 2,957,618 - Psest_2763 0.74 +1.0 2,957,618 - Psest_2763 0.74 +1.3 2,957,618 - Psest_2763 0.74 -0.2 2,957,618 - Psest_2763 0.74 +0.8 2,957,618 - Psest_2763 0.74 +2.0 2,957,618 - Psest_2763 0.74 -0.9 2,957,687 - Psest_2763 0.75 +1.2 2,957,761 + Psest_2763 0.76 +0.5 2,957,762 - Psest_2763 0.76 +2.3 2,957,762 - Psest_2763 0.76 +1.1 2,957,762 - Psest_2763 0.76 +0.5 2,958,356 - Psest_2763 0.83 +1.1 2,958,397 + Psest_2763 0.84 +0.4 2,958,616 + Psest_2763 0.86 +0.8 2,958,616 + Psest_2763 0.86 +0.6 2,958,616 + Psest_2763 0.86 +0.9 2,958,616 + Psest_2763 0.86 +0.0 2,958,616 + Psest_2763 0.86 -0.1 2,958,617 - Psest_2763 0.86 +0.9 2,958,617 - Psest_2763 0.86 -1.3 2,958,617 - Psest_2763 0.86 +0.4 2,958,617 - Psest_2763 0.86 -0.3 2,958,617 - Psest_2763 0.86 +0.3 2,959,258 + +0.9 2,959,259 - -0.4 2,959,259 - +2.1 2,959,303 + +1.3 2,959,304 - +0.8 2,959,429 + +1.6 2,959,429 + +1.3 2,959,429 + +1.5 2,959,445 - -0.4 2,959,466 - +0.2 2,959,507 + +1.9 2,959,507 + +1.1 2,959,508 - +0.4 2,959,795 + +0.8 2,959,795 + +0.8 2,959,796 - +0.5 2,959,822 + Psest_2764 0.40 -1.4 2,959,870 + Psest_2764 0.82 -1.2 2,959,937 + -0.3 2,960,069 + -0.8 2,960,070 - +0.1 2,960,070 - -0.7 2,960,070 - +0.8 2,960,070 - -0.6 2,960,070 - +0.2 2,960,070 - +0.8 2,960,070 - +1.2 2,960,070 - -0.5 2,960,070 - +0.5 2,960,240 + Psest_2765 0.13 -0.5 2,960,241 - Psest_2765 0.13 +1.9 2,960,241 - Psest_2765 0.13 -1.0 2,960,709 - Psest_2765 0.37 +0.2 2,960,709 - Psest_2765 0.37 +0.0 2,960,723 + Psest_2765 0.37 -2.1 2,960,723 + Psest_2765 0.37 -1.2 2,960,724 - Psest_2765 0.37 +0.6 2,960,724 - Psest_2765 0.37 -0.4 2,960,724 - Psest_2765 0.37 +1.0 2,960,724 - Psest_2765 0.37 -1.0 2,960,744 + Psest_2765 0.38 -0.5 2,960,744 + Psest_2765 0.38 -1.0 2,960,745 - Psest_2765 0.38 -1.0 2,960,747 + Psest_2765 0.39 -0.6
Or see this region's nucleotide sequence