Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2571

Experiment: Def Carbenicillin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2570 and Psest_2571 are separated by 176 nucleotidesPsest_2571 and Psest_2572 are separated by 45 nucleotides Psest_2570: Psest_2570 - Transcriptional regulator, at 2,751,709 to 2,752,617 _2570 Psest_2571: Psest_2571 - Glutathione S-transferase, at 2,752,794 to 2,753,423 _2571 Psest_2572: Psest_2572 - Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase, at 2,753,469 to 2,754,446 _2572 Position (kb) 2752 2753 2754Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2751.965 kb on + strand, within Psest_2570at 2751.965 kb on + strand, within Psest_2570at 2751.965 kb on + strand, within Psest_2570at 2751.966 kb on - strand, within Psest_2570at 2751.966 kb on - strand, within Psest_2570at 2751.966 kb on - strand, within Psest_2570at 2752.026 kb on - strand, within Psest_2570at 2752.048 kb on + strand, within Psest_2570at 2752.344 kb on - strand, within Psest_2570at 2752.648 kb on + strandat 2752.649 kb on - strandat 2752.649 kb on - strandat 2752.649 kb on - strandat 2752.787 kb on + strandat 2752.787 kb on + strandat 2752.787 kb on + strandat 2752.788 kb on - strandat 2753.016 kb on + strand, within Psest_2571at 2753.196 kb on - strand, within Psest_2571at 2753.280 kb on + strand, within Psest_2571at 2753.280 kb on + strand, within Psest_2571at 2753.281 kb on - strand, within Psest_2571at 2753.281 kb on - strand, within Psest_2571at 2753.281 kb on - strand, within Psest_2571at 2753.281 kb on - strand, within Psest_2571at 2753.286 kb on + strand, within Psest_2571at 2753.286 kb on + strand, within Psest_2571at 2753.286 kb on + strand, within Psest_2571at 2753.286 kb on + strand, within Psest_2571at 2753.286 kb on + strand, within Psest_2571at 2753.286 kb on + strand, within Psest_2571at 2753.286 kb on + strand, within Psest_2571at 2753.286 kb on + strand, within Psest_2571at 2753.286 kb on + strand, within Psest_2571at 2753.286 kb on + strand, within Psest_2571at 2753.286 kb on + strand, within Psest_2571at 2753.286 kb on + strand, within Psest_2571at 2753.286 kb on + strand, within Psest_2571at 2753.286 kb on + strand, within Psest_2571at 2753.287 kb on - strand, within Psest_2571at 2753.287 kb on - strand, within Psest_2571at 2753.287 kb on - strand, within Psest_2571at 2753.287 kb on - strand, within Psest_2571at 2753.287 kb on - strand, within Psest_2571at 2753.287 kb on - strand, within Psest_2571at 2753.287 kb on - strand, within Psest_2571at 2753.287 kb on - strand, within Psest_2571at 2753.381 kb on - strandat 2753.421 kb on + strandat 2753.422 kb on - strandat 2753.422 kb on - strandat 2753.493 kb on - strandat 2753.493 kb on - strandat 2753.677 kb on + strand, within Psest_2572at 2753.913 kb on + strand, within Psest_2572at 2753.913 kb on + strand, within Psest_2572at 2753.913 kb on + strand, within Psest_2572at 2753.913 kb on + strand, within Psest_2572at 2753.914 kb on - strand, within Psest_2572at 2753.914 kb on - strand, within Psest_2572at 2753.914 kb on - strand, within Psest_2572at 2753.914 kb on - strand, within Psest_2572at 2753.931 kb on + strand, within Psest_2572at 2753.932 kb on - strand, within Psest_2572at 2753.932 kb on - strand, within Psest_2572at 2753.932 kb on - strand, within Psest_2572at 2754.045 kb on + strand, within Psest_2572at 2754.046 kb on - strand, within Psest_2572at 2754.046 kb on - strand, within Psest_2572at 2754.046 kb on - strand, within Psest_2572at 2754.055 kb on - strand, within Psest_2572at 2754.241 kb on + strand, within Psest_2572at 2754.241 kb on + strand, within Psest_2572at 2754.241 kb on + strand, within Psest_2572at 2754.241 kb on + strand, within Psest_2572at 2754.242 kb on - strand, within Psest_2572at 2754.242 kb on - strand, within Psest_2572at 2754.242 kb on - strand, within Psest_2572at 2754.242 kb on - strand, within Psest_2572at 2754.242 kb on - strand, within Psest_2572at 2754.242 kb on - strand, within Psest_2572

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml
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2,751,965 + Psest_2570 0.28 -2.1
2,751,965 + Psest_2570 0.28 -0.2
2,751,965 + Psest_2570 0.28 +1.5
2,751,966 - Psest_2570 0.28 -0.6
2,751,966 - Psest_2570 0.28 +1.1
2,751,966 - Psest_2570 0.28 +1.4
2,752,026 - Psest_2570 0.35 +0.6
2,752,048 + Psest_2570 0.37 -2.5
2,752,344 - Psest_2570 0.70 +0.2
2,752,648 + -0.4
2,752,649 - +0.3
2,752,649 - +0.5
2,752,649 - +0.8
2,752,787 + +1.6
2,752,787 + -0.5
2,752,787 + -1.0
2,752,788 - -1.3
2,753,016 + Psest_2571 0.35 -0.3
2,753,196 - Psest_2571 0.64 +0.2
2,753,280 + Psest_2571 0.77 -3.0
2,753,280 + Psest_2571 0.77 -1.3
2,753,281 - Psest_2571 0.77 +0.1
2,753,281 - Psest_2571 0.77 -1.2
2,753,281 - Psest_2571 0.77 +1.4
2,753,281 - Psest_2571 0.77 -1.7
2,753,286 + Psest_2571 0.78 -0.2
2,753,286 + Psest_2571 0.78 -0.6
2,753,286 + Psest_2571 0.78 -1.1
2,753,286 + Psest_2571 0.78 -1.5
2,753,286 + Psest_2571 0.78 +0.0
2,753,286 + Psest_2571 0.78 -1.4
2,753,286 + Psest_2571 0.78 -0.3
2,753,286 + Psest_2571 0.78 -1.5
2,753,286 + Psest_2571 0.78 +0.5
2,753,286 + Psest_2571 0.78 -0.6
2,753,286 + Psest_2571 0.78 -1.4
2,753,286 + Psest_2571 0.78 -0.8
2,753,286 + Psest_2571 0.78 -1.1
2,753,286 + Psest_2571 0.78 -0.4
2,753,287 - Psest_2571 0.78 +0.3
2,753,287 - Psest_2571 0.78 -0.4
2,753,287 - Psest_2571 0.78 -0.1
2,753,287 - Psest_2571 0.78 -0.5
2,753,287 - Psest_2571 0.78 -0.3
2,753,287 - Psest_2571 0.78 -0.4
2,753,287 - Psest_2571 0.78 +0.2
2,753,287 - Psest_2571 0.78 -0.7
2,753,381 - +0.3
2,753,421 + -0.3
2,753,422 - +1.5
2,753,422 - -1.0
2,753,493 - +1.5
2,753,493 - -0.1
2,753,677 + Psest_2572 0.21 -1.1
2,753,913 + Psest_2572 0.45 -2.1
2,753,913 + Psest_2572 0.45 -1.7
2,753,913 + Psest_2572 0.45 +0.3
2,753,913 + Psest_2572 0.45 -1.0
2,753,914 - Psest_2572 0.46 +0.4
2,753,914 - Psest_2572 0.46 +2.4
2,753,914 - Psest_2572 0.46 -1.7
2,753,914 - Psest_2572 0.46 +0.4
2,753,931 + Psest_2572 0.47 +0.6
2,753,932 - Psest_2572 0.47 +0.8
2,753,932 - Psest_2572 0.47 +0.5
2,753,932 - Psest_2572 0.47 +1.2
2,754,045 + Psest_2572 0.59 +0.3
2,754,046 - Psest_2572 0.59 +0.7
2,754,046 - Psest_2572 0.59 +0.3
2,754,046 - Psest_2572 0.59 -0.9
2,754,055 - Psest_2572 0.60 +1.6
2,754,241 + Psest_2572 0.79 -0.1
2,754,241 + Psest_2572 0.79 -0.3
2,754,241 + Psest_2572 0.79 -0.3
2,754,241 + Psest_2572 0.79 -0.2
2,754,242 - Psest_2572 0.79 +0.0
2,754,242 - Psest_2572 0.79 +1.2
2,754,242 - Psest_2572 0.79 -0.8
2,754,242 - Psest_2572 0.79 -1.0
2,754,242 - Psest_2572 0.79 +0.0
2,754,242 - Psest_2572 0.79 +0.6

Or see this region's nucleotide sequence