Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2570 and Psest_2571 are separated by 176 nucleotides Psest_2571 and Psest_2572 are separated by 45 nucleotides
Psest_2570: Psest_2570 - Transcriptional regulator, at 2,751,709 to 2,752,617
_2570
Psest_2571: Psest_2571 - Glutathione S-transferase, at 2,752,794 to 2,753,423
_2571
Psest_2572: Psest_2572 - Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase, at 2,753,469 to 2,754,446
_2572
Position (kb)
2752
2753
2754 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2751.965 kb on + strand, within Psest_2570 at 2751.965 kb on + strand, within Psest_2570 at 2751.965 kb on + strand, within Psest_2570 at 2751.966 kb on - strand, within Psest_2570 at 2751.966 kb on - strand, within Psest_2570 at 2751.966 kb on - strand, within Psest_2570 at 2752.026 kb on - strand, within Psest_2570 at 2752.048 kb on + strand, within Psest_2570 at 2752.344 kb on - strand, within Psest_2570 at 2752.648 kb on + strand at 2752.649 kb on - strand at 2752.649 kb on - strand at 2752.649 kb on - strand at 2752.787 kb on + strand at 2752.787 kb on + strand at 2752.787 kb on + strand at 2752.788 kb on - strand at 2753.016 kb on + strand, within Psest_2571 at 2753.196 kb on - strand, within Psest_2571 at 2753.280 kb on + strand, within Psest_2571 at 2753.280 kb on + strand, within Psest_2571 at 2753.281 kb on - strand, within Psest_2571 at 2753.281 kb on - strand, within Psest_2571 at 2753.281 kb on - strand, within Psest_2571 at 2753.281 kb on - strand, within Psest_2571 at 2753.286 kb on + strand, within Psest_2571 at 2753.286 kb on + strand, within Psest_2571 at 2753.286 kb on + strand, within Psest_2571 at 2753.286 kb on + strand, within Psest_2571 at 2753.286 kb on + strand, within Psest_2571 at 2753.286 kb on + strand, within Psest_2571 at 2753.286 kb on + strand, within Psest_2571 at 2753.286 kb on + strand, within Psest_2571 at 2753.286 kb on + strand, within Psest_2571 at 2753.286 kb on + strand, within Psest_2571 at 2753.286 kb on + strand, within Psest_2571 at 2753.286 kb on + strand, within Psest_2571 at 2753.286 kb on + strand, within Psest_2571 at 2753.286 kb on + strand, within Psest_2571 at 2753.287 kb on - strand, within Psest_2571 at 2753.287 kb on - strand, within Psest_2571 at 2753.287 kb on - strand, within Psest_2571 at 2753.287 kb on - strand, within Psest_2571 at 2753.287 kb on - strand, within Psest_2571 at 2753.287 kb on - strand, within Psest_2571 at 2753.287 kb on - strand, within Psest_2571 at 2753.287 kb on - strand, within Psest_2571 at 2753.381 kb on - strand at 2753.421 kb on + strand at 2753.422 kb on - strand at 2753.422 kb on - strand at 2753.493 kb on - strand at 2753.493 kb on - strand at 2753.677 kb on + strand, within Psest_2572 at 2753.913 kb on + strand, within Psest_2572 at 2753.913 kb on + strand, within Psest_2572 at 2753.913 kb on + strand, within Psest_2572 at 2753.913 kb on + strand, within Psest_2572 at 2753.914 kb on - strand, within Psest_2572 at 2753.914 kb on - strand, within Psest_2572 at 2753.914 kb on - strand, within Psest_2572 at 2753.914 kb on - strand, within Psest_2572 at 2753.931 kb on + strand, within Psest_2572 at 2753.932 kb on - strand, within Psest_2572 at 2753.932 kb on - strand, within Psest_2572 at 2753.932 kb on - strand, within Psest_2572 at 2754.045 kb on + strand, within Psest_2572 at 2754.046 kb on - strand, within Psest_2572 at 2754.046 kb on - strand, within Psest_2572 at 2754.046 kb on - strand, within Psest_2572 at 2754.055 kb on - strand, within Psest_2572 at 2754.241 kb on + strand, within Psest_2572 at 2754.241 kb on + strand, within Psest_2572 at 2754.241 kb on + strand, within Psest_2572 at 2754.241 kb on + strand, within Psest_2572 at 2754.242 kb on - strand, within Psest_2572 at 2754.242 kb on - strand, within Psest_2572 at 2754.242 kb on - strand, within Psest_2572 at 2754.242 kb on - strand, within Psest_2572 at 2754.242 kb on - strand, within Psest_2572 at 2754.242 kb on - strand, within Psest_2572
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 2,751,965 + Psest_2570 0.28 -2.1 2,751,965 + Psest_2570 0.28 -0.2 2,751,965 + Psest_2570 0.28 +1.5 2,751,966 - Psest_2570 0.28 -0.6 2,751,966 - Psest_2570 0.28 +1.1 2,751,966 - Psest_2570 0.28 +1.4 2,752,026 - Psest_2570 0.35 +0.6 2,752,048 + Psest_2570 0.37 -2.5 2,752,344 - Psest_2570 0.70 +0.2 2,752,648 + -0.4 2,752,649 - +0.3 2,752,649 - +0.5 2,752,649 - +0.8 2,752,787 + +1.6 2,752,787 + -0.5 2,752,787 + -1.0 2,752,788 - -1.3 2,753,016 + Psest_2571 0.35 -0.3 2,753,196 - Psest_2571 0.64 +0.2 2,753,280 + Psest_2571 0.77 -3.0 2,753,280 + Psest_2571 0.77 -1.3 2,753,281 - Psest_2571 0.77 +0.1 2,753,281 - Psest_2571 0.77 -1.2 2,753,281 - Psest_2571 0.77 +1.4 2,753,281 - Psest_2571 0.77 -1.7 2,753,286 + Psest_2571 0.78 -0.2 2,753,286 + Psest_2571 0.78 -0.6 2,753,286 + Psest_2571 0.78 -1.1 2,753,286 + Psest_2571 0.78 -1.5 2,753,286 + Psest_2571 0.78 +0.0 2,753,286 + Psest_2571 0.78 -1.4 2,753,286 + Psest_2571 0.78 -0.3 2,753,286 + Psest_2571 0.78 -1.5 2,753,286 + Psest_2571 0.78 +0.5 2,753,286 + Psest_2571 0.78 -0.6 2,753,286 + Psest_2571 0.78 -1.4 2,753,286 + Psest_2571 0.78 -0.8 2,753,286 + Psest_2571 0.78 -1.1 2,753,286 + Psest_2571 0.78 -0.4 2,753,287 - Psest_2571 0.78 +0.3 2,753,287 - Psest_2571 0.78 -0.4 2,753,287 - Psest_2571 0.78 -0.1 2,753,287 - Psest_2571 0.78 -0.5 2,753,287 - Psest_2571 0.78 -0.3 2,753,287 - Psest_2571 0.78 -0.4 2,753,287 - Psest_2571 0.78 +0.2 2,753,287 - Psest_2571 0.78 -0.7 2,753,381 - +0.3 2,753,421 + -0.3 2,753,422 - +1.5 2,753,422 - -1.0 2,753,493 - +1.5 2,753,493 - -0.1 2,753,677 + Psest_2572 0.21 -1.1 2,753,913 + Psest_2572 0.45 -2.1 2,753,913 + Psest_2572 0.45 -1.7 2,753,913 + Psest_2572 0.45 +0.3 2,753,913 + Psest_2572 0.45 -1.0 2,753,914 - Psest_2572 0.46 +0.4 2,753,914 - Psest_2572 0.46 +2.4 2,753,914 - Psest_2572 0.46 -1.7 2,753,914 - Psest_2572 0.46 +0.4 2,753,931 + Psest_2572 0.47 +0.6 2,753,932 - Psest_2572 0.47 +0.8 2,753,932 - Psest_2572 0.47 +0.5 2,753,932 - Psest_2572 0.47 +1.2 2,754,045 + Psest_2572 0.59 +0.3 2,754,046 - Psest_2572 0.59 +0.7 2,754,046 - Psest_2572 0.59 +0.3 2,754,046 - Psest_2572 0.59 -0.9 2,754,055 - Psest_2572 0.60 +1.6 2,754,241 + Psest_2572 0.79 -0.1 2,754,241 + Psest_2572 0.79 -0.3 2,754,241 + Psest_2572 0.79 -0.3 2,754,241 + Psest_2572 0.79 -0.2 2,754,242 - Psest_2572 0.79 +0.0 2,754,242 - Psest_2572 0.79 +1.2 2,754,242 - Psest_2572 0.79 -0.8 2,754,242 - Psest_2572 0.79 -1.0 2,754,242 - Psest_2572 0.79 +0.0 2,754,242 - Psest_2572 0.79 +0.6
Or see this region's nucleotide sequence