Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2507 and Psest_2508 are separated by 401 nucleotides Psest_2508 and Psest_2509 are separated by 313 nucleotides
Psest_2507: Psest_2507 - Flagellin and related hook-associated proteins, at 2,680,494 to 2,681,678
_2507
Psest_2508: Psest_2508 - DNA ligase, NAD-dependent, at 2,682,080 to 2,684,455
_2508
Psest_2509: Psest_2509 - cell division protein ZipA, at 2,684,769 to 2,685,590
_2509
Position (kb)
2682
2683
2684
2685 Strain fitness (log2 ratio)
-2
-1
0
1 at 2681.114 kb on + strand, within Psest_2507 at 2681.150 kb on + strand, within Psest_2507 at 2681.150 kb on + strand, within Psest_2507 at 2681.150 kb on + strand, within Psest_2507 at 2681.150 kb on + strand, within Psest_2507 at 2681.151 kb on - strand, within Psest_2507 at 2681.151 kb on - strand, within Psest_2507 at 2681.151 kb on - strand, within Psest_2507 at 2681.151 kb on - strand, within Psest_2507 at 2681.151 kb on - strand, within Psest_2507 at 2681.151 kb on - strand, within Psest_2507 at 2681.151 kb on - strand, within Psest_2507 at 2681.151 kb on - strand, within Psest_2507 at 2681.151 kb on - strand, within Psest_2507 at 2681.151 kb on - strand, within Psest_2507 at 2681.151 kb on - strand, within Psest_2507 at 2681.151 kb on - strand, within Psest_2507 at 2681.151 kb on - strand, within Psest_2507 at 2681.151 kb on - strand, within Psest_2507 at 2681.151 kb on - strand, within Psest_2507 at 2681.151 kb on - strand, within Psest_2507 at 2681.233 kb on - strand, within Psest_2507 at 2681.233 kb on - strand, within Psest_2507 at 2681.233 kb on - strand, within Psest_2507 at 2681.388 kb on + strand, within Psest_2507 at 2681.388 kb on + strand, within Psest_2507 at 2681.405 kb on + strand, within Psest_2507 at 2681.405 kb on + strand, within Psest_2507 at 2681.406 kb on - strand, within Psest_2507 at 2681.465 kb on + strand, within Psest_2507 at 2681.669 kb on + strand at 2681.669 kb on + strand at 2681.701 kb on - strand at 2681.705 kb on - strand at 2681.705 kb on - strand at 2681.742 kb on - strand at 2681.848 kb on + strand at 2681.864 kb on + strand at 2681.864 kb on + strand at 2681.913 kb on - strand at 2682.081 kb on + strand at 2682.081 kb on + strand at 2682.081 kb on + strand at 2682.082 kb on - strand at 2684.649 kb on + strand at 2684.672 kb on - strand at 2684.768 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 2,681,114 + Psest_2507 0.52 -0.7 2,681,150 + Psest_2507 0.55 -0.4 2,681,150 + Psest_2507 0.55 +0.7 2,681,150 + Psest_2507 0.55 -0.8 2,681,150 + Psest_2507 0.55 -0.3 2,681,151 - Psest_2507 0.55 +0.2 2,681,151 - Psest_2507 0.55 -0.2 2,681,151 - Psest_2507 0.55 -0.3 2,681,151 - Psest_2507 0.55 -0.1 2,681,151 - Psest_2507 0.55 -0.3 2,681,151 - Psest_2507 0.55 +0.0 2,681,151 - Psest_2507 0.55 -0.5 2,681,151 - Psest_2507 0.55 -0.1 2,681,151 - Psest_2507 0.55 +0.5 2,681,151 - Psest_2507 0.55 -0.4 2,681,151 - Psest_2507 0.55 -1.3 2,681,151 - Psest_2507 0.55 -0.2 2,681,151 - Psest_2507 0.55 -1.3 2,681,151 - Psest_2507 0.55 -0.4 2,681,151 - Psest_2507 0.55 -0.2 2,681,151 - Psest_2507 0.55 -1.3 2,681,233 - Psest_2507 0.62 -0.8 2,681,233 - Psest_2507 0.62 +0.1 2,681,233 - Psest_2507 0.62 -0.4 2,681,388 + Psest_2507 0.75 -2.0 2,681,388 + Psest_2507 0.75 +0.4 2,681,405 + Psest_2507 0.77 +0.9 2,681,405 + Psest_2507 0.77 +0.3 2,681,406 - Psest_2507 0.77 +0.5 2,681,465 + Psest_2507 0.82 -0.6 2,681,669 + -0.7 2,681,669 + +1.3 2,681,701 - +0.2 2,681,705 - +0.5 2,681,705 - -0.3 2,681,742 - +0.6 2,681,848 + -0.1 2,681,864 + +0.4 2,681,864 + -0.4 2,681,913 - -0.6 2,682,081 + -0.3 2,682,081 + -1.9 2,682,081 + -0.3 2,682,082 - -1.2 2,684,649 + -0.3 2,684,672 - -0.3 2,684,768 - +0.9
Or see this region's nucleotide sequence