Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2508

Experiment: Def Carbenicillin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2507 and Psest_2508 are separated by 401 nucleotidesPsest_2508 and Psest_2509 are separated by 313 nucleotides Psest_2507: Psest_2507 - Flagellin and related hook-associated proteins, at 2,680,494 to 2,681,678 _2507 Psest_2508: Psest_2508 - DNA ligase, NAD-dependent, at 2,682,080 to 2,684,455 _2508 Psest_2509: Psest_2509 - cell division protein ZipA, at 2,684,769 to 2,685,590 _2509 Position (kb) 2682 2683 2684 2685Strain fitness (log2 ratio) -2 -1 0 1at 2681.114 kb on + strand, within Psest_2507at 2681.150 kb on + strand, within Psest_2507at 2681.150 kb on + strand, within Psest_2507at 2681.150 kb on + strand, within Psest_2507at 2681.150 kb on + strand, within Psest_2507at 2681.151 kb on - strand, within Psest_2507at 2681.151 kb on - strand, within Psest_2507at 2681.151 kb on - strand, within Psest_2507at 2681.151 kb on - strand, within Psest_2507at 2681.151 kb on - strand, within Psest_2507at 2681.151 kb on - strand, within Psest_2507at 2681.151 kb on - strand, within Psest_2507at 2681.151 kb on - strand, within Psest_2507at 2681.151 kb on - strand, within Psest_2507at 2681.151 kb on - strand, within Psest_2507at 2681.151 kb on - strand, within Psest_2507at 2681.151 kb on - strand, within Psest_2507at 2681.151 kb on - strand, within Psest_2507at 2681.151 kb on - strand, within Psest_2507at 2681.151 kb on - strand, within Psest_2507at 2681.151 kb on - strand, within Psest_2507at 2681.233 kb on - strand, within Psest_2507at 2681.233 kb on - strand, within Psest_2507at 2681.233 kb on - strand, within Psest_2507at 2681.388 kb on + strand, within Psest_2507at 2681.388 kb on + strand, within Psest_2507at 2681.405 kb on + strand, within Psest_2507at 2681.405 kb on + strand, within Psest_2507at 2681.406 kb on - strand, within Psest_2507at 2681.465 kb on + strand, within Psest_2507at 2681.669 kb on + strandat 2681.669 kb on + strandat 2681.701 kb on - strandat 2681.705 kb on - strandat 2681.705 kb on - strandat 2681.742 kb on - strandat 2681.848 kb on + strandat 2681.864 kb on + strandat 2681.864 kb on + strandat 2681.913 kb on - strandat 2682.081 kb on + strandat 2682.081 kb on + strandat 2682.081 kb on + strandat 2682.082 kb on - strandat 2684.649 kb on + strandat 2684.672 kb on - strandat 2684.768 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml
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2,681,114 + Psest_2507 0.52 -0.7
2,681,150 + Psest_2507 0.55 -0.4
2,681,150 + Psest_2507 0.55 +0.7
2,681,150 + Psest_2507 0.55 -0.8
2,681,150 + Psest_2507 0.55 -0.3
2,681,151 - Psest_2507 0.55 +0.2
2,681,151 - Psest_2507 0.55 -0.2
2,681,151 - Psest_2507 0.55 -0.3
2,681,151 - Psest_2507 0.55 -0.1
2,681,151 - Psest_2507 0.55 -0.3
2,681,151 - Psest_2507 0.55 +0.0
2,681,151 - Psest_2507 0.55 -0.5
2,681,151 - Psest_2507 0.55 -0.1
2,681,151 - Psest_2507 0.55 +0.5
2,681,151 - Psest_2507 0.55 -0.4
2,681,151 - Psest_2507 0.55 -1.3
2,681,151 - Psest_2507 0.55 -0.2
2,681,151 - Psest_2507 0.55 -1.3
2,681,151 - Psest_2507 0.55 -0.4
2,681,151 - Psest_2507 0.55 -0.2
2,681,151 - Psest_2507 0.55 -1.3
2,681,233 - Psest_2507 0.62 -0.8
2,681,233 - Psest_2507 0.62 +0.1
2,681,233 - Psest_2507 0.62 -0.4
2,681,388 + Psest_2507 0.75 -2.0
2,681,388 + Psest_2507 0.75 +0.4
2,681,405 + Psest_2507 0.77 +0.9
2,681,405 + Psest_2507 0.77 +0.3
2,681,406 - Psest_2507 0.77 +0.5
2,681,465 + Psest_2507 0.82 -0.6
2,681,669 + -0.7
2,681,669 + +1.3
2,681,701 - +0.2
2,681,705 - +0.5
2,681,705 - -0.3
2,681,742 - +0.6
2,681,848 + -0.1
2,681,864 + +0.4
2,681,864 + -0.4
2,681,913 - -0.6
2,682,081 + -0.3
2,682,081 + -1.9
2,682,081 + -0.3
2,682,082 - -1.2
2,684,649 + -0.3
2,684,672 - -0.3
2,684,768 - +0.9

Or see this region's nucleotide sequence