Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2418

Experiment: Def Carbenicillin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2418 and Psest_2419 are separated by 7 nucleotides Psest_2418: Psest_2418 - diguanylate cyclase (GGDEF) domain, at 2,580,774 to 2,581,688 _2418 Psest_2419: Psest_2419 - AraC-type DNA-binding domain-containing proteins, at 2,581,696 to 2,582,733 _2419 Position (kb) 2580 2581 2582Strain fitness (log2 ratio) -2 -1 0 1 2at 2579.821 kb on + strandat 2579.988 kb on - strandat 2580.013 kb on - strandat 2580.013 kb on - strandat 2580.133 kb on + strandat 2580.134 kb on - strandat 2580.295 kb on - strandat 2580.546 kb on + strandat 2580.546 kb on + strandat 2581.408 kb on + strand, within Psest_2418at 2581.717 kb on + strandat 2581.831 kb on + strand, within Psest_2419at 2581.831 kb on + strand, within Psest_2419at 2581.832 kb on - strand, within Psest_2419at 2581.832 kb on - strand, within Psest_2419at 2582.099 kb on - strand, within Psest_2419at 2582.099 kb on - strand, within Psest_2419at 2582.099 kb on - strand, within Psest_2419at 2582.252 kb on - strand, within Psest_2419at 2582.321 kb on - strand, within Psest_2419at 2582.435 kb on - strand, within Psest_2419at 2582.435 kb on - strand, within Psest_2419at 2582.435 kb on - strand, within Psest_2419at 2582.435 kb on - strand, within Psest_2419at 2582.441 kb on - strand, within Psest_2419at 2582.590 kb on + strand, within Psest_2419at 2582.591 kb on - strand, within Psest_2419at 2582.596 kb on + strand, within Psest_2419at 2582.596 kb on + strand, within Psest_2419

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml
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2,579,821 + +0.7
2,579,988 - +2.2
2,580,013 - +0.9
2,580,013 - +2.0
2,580,133 + +0.5
2,580,134 - -0.4
2,580,295 - +1.3
2,580,546 + -1.8
2,580,546 + -1.0
2,581,408 + Psest_2418 0.69 -1.7
2,581,717 + +0.2
2,581,831 + Psest_2419 0.13 +2.5
2,581,831 + Psest_2419 0.13 +0.4
2,581,832 - Psest_2419 0.13 +1.2
2,581,832 - Psest_2419 0.13 +0.3
2,582,099 - Psest_2419 0.39 +1.2
2,582,099 - Psest_2419 0.39 +1.2
2,582,099 - Psest_2419 0.39 +0.6
2,582,252 - Psest_2419 0.54 +2.5
2,582,321 - Psest_2419 0.60 +0.8
2,582,435 - Psest_2419 0.71 -0.2
2,582,435 - Psest_2419 0.71 +1.6
2,582,435 - Psest_2419 0.71 +0.5
2,582,435 - Psest_2419 0.71 -1.4
2,582,441 - Psest_2419 0.72 +1.0
2,582,590 + Psest_2419 0.86 +0.2
2,582,591 - Psest_2419 0.86 -0.8
2,582,596 + Psest_2419 0.87 -1.2
2,582,596 + Psest_2419 0.87 -0.5

Or see this region's nucleotide sequence