Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2413

Experiment: Def Carbenicillin 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_2412 and Psest_2413 are separated by 29 nucleotidesPsest_2413 and Psest_2414 overlap by 1 nucleotidesPsest_2414 and Psest_2415 are separated by 11 nucleotides Psest_2412: Psest_2412 - Predicted phosphatase, at 2,571,164 to 2,573,125 _2412 Psest_2413: Psest_2413 - Periplasmic protein TonB, links inner and outer membranes, at 2,573,155 to 2,573,943 _2413 Psest_2414: Psest_2414 - TolR protein, at 2,573,943 to 2,574,407 _2414 Psest_2415: Psest_2415 - TolQ protein, at 2,574,419 to 2,575,132 _2415 Position (kb) 2573 2574Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 2572.179 kb on + strand, within Psest_2412at 2572.210 kb on + strand, within Psest_2412at 2572.210 kb on + strand, within Psest_2412at 2572.245 kb on + strand, within Psest_2412at 2572.286 kb on - strand, within Psest_2412at 2572.332 kb on + strand, within Psest_2412at 2572.332 kb on + strand, within Psest_2412at 2572.332 kb on + strand, within Psest_2412at 2572.332 kb on + strand, within Psest_2412at 2572.332 kb on + strand, within Psest_2412at 2572.332 kb on + strand, within Psest_2412at 2572.333 kb on - strand, within Psest_2412at 2572.333 kb on - strand, within Psest_2412at 2572.333 kb on - strand, within Psest_2412at 2572.333 kb on - strand, within Psest_2412at 2572.333 kb on - strand, within Psest_2412at 2572.333 kb on - strand, within Psest_2412at 2572.333 kb on - strand, within Psest_2412at 2572.333 kb on - strand, within Psest_2412at 2572.362 kb on + strand, within Psest_2412at 2572.362 kb on + strand, within Psest_2412at 2572.362 kb on + strand, within Psest_2412at 2572.512 kb on + strand, within Psest_2412at 2572.668 kb on + strand, within Psest_2412at 2572.854 kb on + strand, within Psest_2412at 2572.854 kb on + strand, within Psest_2412at 2572.906 kb on + strand, within Psest_2412at 2573.331 kb on + strand, within Psest_2413at 2573.331 kb on + strand, within Psest_2413at 2573.331 kb on + strand, within Psest_2413at 2573.331 kb on + strand, within Psest_2413at 2573.331 kb on + strand, within Psest_2413at 2573.332 kb on - strand, within Psest_2413at 2573.332 kb on - strand, within Psest_2413at 2573.333 kb on + strand, within Psest_2413at 2573.333 kb on + strand, within Psest_2413at 2573.334 kb on - strand, within Psest_2413at 2574.070 kb on + strand, within Psest_2414at 2574.071 kb on - strand, within Psest_2414at 2574.187 kb on + strand, within Psest_2414at 2574.187 kb on + strand, within Psest_2414at 2574.188 kb on - strand, within Psest_2414at 2574.188 kb on - strand, within Psest_2414at 2574.350 kb on - strand, within Psest_2414at 2574.357 kb on + strand, within Psest_2414at 2574.357 kb on + strand, within Psest_2414at 2574.357 kb on + strand, within Psest_2414at 2574.358 kb on - strand, within Psest_2414at 2574.358 kb on - strand, within Psest_2414at 2574.499 kb on - strand, within Psest_2415at 2574.544 kb on - strand, within Psest_2415at 2574.544 kb on - strand, within Psest_2415at 2574.700 kb on + strand, within Psest_2415at 2574.702 kb on + strand, within Psest_2415at 2574.702 kb on + strand, within Psest_2415at 2574.702 kb on + strand, within Psest_2415at 2574.703 kb on - strand, within Psest_2415at 2574.703 kb on - strand, within Psest_2415at 2574.703 kb on - strand, within Psest_2415at 2574.780 kb on + strand, within Psest_2415

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml
remove
2,572,179 + Psest_2412 0.52 -0.2
2,572,210 + Psest_2412 0.53 +0.2
2,572,210 + Psest_2412 0.53 +0.2
2,572,245 + Psest_2412 0.55 +0.0
2,572,286 - Psest_2412 0.57 -1.1
2,572,332 + Psest_2412 0.60 +1.0
2,572,332 + Psest_2412 0.60 -1.0
2,572,332 + Psest_2412 0.60 -2.2
2,572,332 + Psest_2412 0.60 -1.5
2,572,332 + Psest_2412 0.60 +0.4
2,572,332 + Psest_2412 0.60 +0.6
2,572,333 - Psest_2412 0.60 +1.2
2,572,333 - Psest_2412 0.60 +0.2
2,572,333 - Psest_2412 0.60 -0.4
2,572,333 - Psest_2412 0.60 +0.1
2,572,333 - Psest_2412 0.60 +0.1
2,572,333 - Psest_2412 0.60 -0.5
2,572,333 - Psest_2412 0.60 +0.6
2,572,333 - Psest_2412 0.60 -1.1
2,572,362 + Psest_2412 0.61 -1.8
2,572,362 + Psest_2412 0.61 +0.4
2,572,362 + Psest_2412 0.61 -0.2
2,572,512 + Psest_2412 0.69 +3.3
2,572,668 + Psest_2412 0.77 +2.2
2,572,854 + Psest_2412 0.86 +2.2
2,572,854 + Psest_2412 0.86 +0.9
2,572,906 + Psest_2412 0.89 +0.4
2,573,331 + Psest_2413 0.22 +3.5
2,573,331 + Psest_2413 0.22 +0.4
2,573,331 + Psest_2413 0.22 +1.2
2,573,331 + Psest_2413 0.22 +4.8
2,573,331 + Psest_2413 0.22 +0.4
2,573,332 - Psest_2413 0.22 +1.6
2,573,332 - Psest_2413 0.22 -1.1
2,573,333 + Psest_2413 0.23 +1.0
2,573,333 + Psest_2413 0.23 +2.4
2,573,334 - Psest_2413 0.23 +1.5
2,574,070 + Psest_2414 0.27 +1.1
2,574,071 - Psest_2414 0.28 +1.2
2,574,187 + Psest_2414 0.52 -0.3
2,574,187 + Psest_2414 0.52 +0.6
2,574,188 - Psest_2414 0.53 +0.0
2,574,188 - Psest_2414 0.53 +2.2
2,574,350 - Psest_2414 0.88 -0.1
2,574,357 + Psest_2414 0.89 +0.6
2,574,357 + Psest_2414 0.89 +0.2
2,574,357 + Psest_2414 0.89 +1.6
2,574,358 - Psest_2414 0.89 -0.6
2,574,358 - Psest_2414 0.89 -0.3
2,574,499 - Psest_2415 0.11 +0.0
2,574,544 - Psest_2415 0.18 +1.0
2,574,544 - Psest_2415 0.18 -0.8
2,574,700 + Psest_2415 0.39 -0.2
2,574,702 + Psest_2415 0.40 +0.6
2,574,702 + Psest_2415 0.40 -1.0
2,574,702 + Psest_2415 0.40 +0.1
2,574,703 - Psest_2415 0.40 -0.6
2,574,703 - Psest_2415 0.40 -0.5
2,574,703 - Psest_2415 0.40 +1.1
2,574,780 + Psest_2415 0.51 +0.7

Or see this region's nucleotide sequence