Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0233

Experiment: Def Carbenicillin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0232 and Psest_0233 are separated by 98 nucleotidesPsest_0233 and Psest_0234 are separated by 67 nucleotides Psest_0232: Psest_0232 - Predicted dehydrogenase, at 240,529 to 241,647 _0232 Psest_0233: Psest_0233 - hypothetical protein, at 241,746 to 243,479 _0233 Psest_0234: Psest_0234 - dihydroxy-acid dehydratase, at 243,547 to 245,385 _0234 Position (kb) 241 242 243 244Strain fitness (log2 ratio) -2 -1 0 1 2at 240.923 kb on + strand, within Psest_0232at 240.923 kb on + strand, within Psest_0232at 240.923 kb on + strand, within Psest_0232at 240.923 kb on + strand, within Psest_0232at 240.923 kb on + strand, within Psest_0232at 240.923 kb on + strand, within Psest_0232at 240.923 kb on + strand, within Psest_0232at 240.924 kb on - strand, within Psest_0232at 240.924 kb on - strand, within Psest_0232at 240.924 kb on - strand, within Psest_0232at 240.924 kb on - strand, within Psest_0232at 240.924 kb on - strand, within Psest_0232at 240.924 kb on - strand, within Psest_0232at 240.924 kb on - strand, within Psest_0232at 241.155 kb on - strand, within Psest_0232at 241.222 kb on + strand, within Psest_0232at 241.222 kb on + strand, within Psest_0232at 241.222 kb on + strand, within Psest_0232at 241.223 kb on - strand, within Psest_0232at 241.400 kb on - strand, within Psest_0232at 241.783 kb on - strandat 241.783 kb on - strandat 241.783 kb on - strandat 241.783 kb on - strandat 241.783 kb on - strandat 241.783 kb on - strandat 241.801 kb on + strandat 241.802 kb on - strandat 242.028 kb on + strand, within Psest_0233at 242.029 kb on - strand, within Psest_0233at 242.031 kb on + strand, within Psest_0233at 242.031 kb on + strand, within Psest_0233at 242.031 kb on + strand, within Psest_0233at 242.031 kb on + strand, within Psest_0233at 242.032 kb on - strand, within Psest_0233at 242.032 kb on - strand, within Psest_0233at 242.032 kb on - strand, within Psest_0233at 242.085 kb on + strand, within Psest_0233at 242.085 kb on + strand, within Psest_0233at 242.085 kb on + strand, within Psest_0233at 242.085 kb on + strand, within Psest_0233at 242.085 kb on + strand, within Psest_0233at 242.085 kb on + strand, within Psest_0233at 242.085 kb on + strand, within Psest_0233at 242.085 kb on + strand, within Psest_0233at 242.085 kb on + strand, within Psest_0233at 242.085 kb on + strand, within Psest_0233at 242.085 kb on + strand, within Psest_0233at 242.086 kb on - strand, within Psest_0233at 242.086 kb on - strand, within Psest_0233at 242.086 kb on - strand, within Psest_0233at 242.086 kb on - strand, within Psest_0233at 242.086 kb on - strand, within Psest_0233at 242.086 kb on - strand, within Psest_0233at 242.086 kb on - strand, within Psest_0233at 242.086 kb on - strand, within Psest_0233at 242.086 kb on - strand, within Psest_0233at 242.143 kb on - strand, within Psest_0233at 242.179 kb on + strand, within Psest_0233at 242.179 kb on + strand, within Psest_0233at 242.300 kb on + strand, within Psest_0233at 242.653 kb on - strand, within Psest_0233at 242.951 kb on - strand, within Psest_0233at 243.084 kb on + strand, within Psest_0233at 243.084 kb on + strand, within Psest_0233at 243.119 kb on + strand, within Psest_0233at 243.119 kb on + strand, within Psest_0233at 243.232 kb on + strand, within Psest_0233at 243.232 kb on + strand, within Psest_0233at 243.232 kb on + strand, within Psest_0233at 243.232 kb on + strand, within Psest_0233at 243.232 kb on + strand, within Psest_0233at 243.233 kb on - strand, within Psest_0233at 243.233 kb on - strand, within Psest_0233at 243.233 kb on - strand, within Psest_0233at 243.233 kb on - strand, within Psest_0233at 243.233 kb on - strand, within Psest_0233at 243.233 kb on - strand, within Psest_0233at 243.406 kb on + strandat 243.407 kb on - strandat 243.526 kb on + strandat 243.526 kb on + strandat 243.527 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml
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240,923 + Psest_0232 0.35 +1.2
240,923 + Psest_0232 0.35 -1.0
240,923 + Psest_0232 0.35 -0.4
240,923 + Psest_0232 0.35 -1.5
240,923 + Psest_0232 0.35 -0.5
240,923 + Psest_0232 0.35 +1.0
240,923 + Psest_0232 0.35 +2.3
240,924 - Psest_0232 0.35 +0.4
240,924 - Psest_0232 0.35 +0.3
240,924 - Psest_0232 0.35 -0.1
240,924 - Psest_0232 0.35 +1.5
240,924 - Psest_0232 0.35 +1.1
240,924 - Psest_0232 0.35 +1.0
240,924 - Psest_0232 0.35 -0.5
241,155 - Psest_0232 0.56 +0.7
241,222 + Psest_0232 0.62 +1.6
241,222 + Psest_0232 0.62 +1.3
241,222 + Psest_0232 0.62 +1.6
241,223 - Psest_0232 0.62 -0.9
241,400 - Psest_0232 0.78 -0.3
241,783 - +1.0
241,783 - +0.7
241,783 - +0.2
241,783 - -0.1
241,783 - +1.8
241,783 - +0.9
241,801 + +0.4
241,802 - +1.6
242,028 + Psest_0233 0.16 +1.2
242,029 - Psest_0233 0.16 +1.8
242,031 + Psest_0233 0.16 +0.3
242,031 + Psest_0233 0.16 +1.5
242,031 + Psest_0233 0.16 +0.4
242,031 + Psest_0233 0.16 +0.6
242,032 - Psest_0233 0.16 -1.4
242,032 - Psest_0233 0.16 -0.4
242,032 - Psest_0233 0.16 -0.7
242,085 + Psest_0233 0.20 +1.1
242,085 + Psest_0233 0.20 +1.3
242,085 + Psest_0233 0.20 +0.7
242,085 + Psest_0233 0.20 +0.2
242,085 + Psest_0233 0.20 +0.4
242,085 + Psest_0233 0.20 +1.0
242,085 + Psest_0233 0.20 +0.8
242,085 + Psest_0233 0.20 +1.0
242,085 + Psest_0233 0.20 +0.2
242,085 + Psest_0233 0.20 +0.6
242,085 + Psest_0233 0.20 +1.7
242,086 - Psest_0233 0.20 -0.4
242,086 - Psest_0233 0.20 +0.9
242,086 - Psest_0233 0.20 +1.1
242,086 - Psest_0233 0.20 -1.1
242,086 - Psest_0233 0.20 -0.1
242,086 - Psest_0233 0.20 -0.1
242,086 - Psest_0233 0.20 -2.7
242,086 - Psest_0233 0.20 +0.6
242,086 - Psest_0233 0.20 +0.8
242,143 - Psest_0233 0.23 +0.2
242,179 + Psest_0233 0.25 +0.3
242,179 + Psest_0233 0.25 +1.4
242,300 + Psest_0233 0.32 +0.1
242,653 - Psest_0233 0.52 -0.4
242,951 - Psest_0233 0.69 +0.1
243,084 + Psest_0233 0.77 +0.9
243,084 + Psest_0233 0.77 +1.2
243,119 + Psest_0233 0.79 +1.1
243,119 + Psest_0233 0.79 +0.6
243,232 + Psest_0233 0.86 +1.0
243,232 + Psest_0233 0.86 -0.6
243,232 + Psest_0233 0.86 +0.6
243,232 + Psest_0233 0.86 -0.4
243,232 + Psest_0233 0.86 +0.7
243,233 - Psest_0233 0.86 +1.1
243,233 - Psest_0233 0.86 +1.4
243,233 - Psest_0233 0.86 +0.9
243,233 - Psest_0233 0.86 +0.8
243,233 - Psest_0233 0.86 +0.5
243,233 - Psest_0233 0.86 -2.1
243,406 + +1.2
243,407 - +0.1
243,526 + +0.8
243,526 + +0.1
243,527 - +1.9

Or see this region's nucleotide sequence