Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2294

Experiment: Def Carbenicillin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2292 and Psest_2293 are separated by 9 nucleotidesPsest_2293 and Psest_2294 are separated by 43 nucleotidesPsest_2294 and Psest_2295 are separated by 585 nucleotides Psest_2292: Psest_2292 - Cytochrome c2, at 2,444,140 to 2,444,982 _2292 Psest_2293: Psest_2293 - hypothetical protein, at 2,444,992 to 2,445,117 _2293 Psest_2294: Psest_2294 - nitrite reductase, copper-containing, at 2,445,161 to 2,446,540 _2294 Psest_2295: Psest_2295 - Predicted permeases, at 2,447,126 to 2,447,887 _2295 Position (kb) 2445 2446 2447Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2444.240 kb on + strand, within Psest_2292at 2444.240 kb on + strand, within Psest_2292at 2444.240 kb on + strand, within Psest_2292at 2444.240 kb on + strand, within Psest_2292at 2444.240 kb on + strand, within Psest_2292at 2444.240 kb on + strand, within Psest_2292at 2444.240 kb on + strand, within Psest_2292at 2444.241 kb on - strand, within Psest_2292at 2444.294 kb on + strand, within Psest_2292at 2444.532 kb on + strand, within Psest_2292at 2444.693 kb on + strand, within Psest_2292at 2444.694 kb on - strand, within Psest_2292at 2444.694 kb on - strand, within Psest_2292at 2444.694 kb on - strand, within Psest_2292at 2444.716 kb on - strand, within Psest_2292at 2444.717 kb on + strand, within Psest_2292at 2444.717 kb on + strand, within Psest_2292at 2444.717 kb on + strand, within Psest_2292at 2444.717 kb on + strand, within Psest_2292at 2444.718 kb on - strand, within Psest_2292at 2444.718 kb on - strand, within Psest_2292at 2444.718 kb on - strand, within Psest_2292at 2444.718 kb on - strand, within Psest_2292at 2444.718 kb on - strand, within Psest_2292at 2444.718 kb on - strand, within Psest_2292at 2444.718 kb on - strand, within Psest_2292at 2444.718 kb on - strand, within Psest_2292at 2444.774 kb on + strand, within Psest_2292at 2444.774 kb on + strand, within Psest_2292at 2444.775 kb on - strand, within Psest_2292at 2444.777 kb on + strand, within Psest_2292at 2444.778 kb on - strand, within Psest_2292at 2444.778 kb on - strand, within Psest_2292at 2444.819 kb on + strand, within Psest_2292at 2444.819 kb on + strand, within Psest_2292at 2444.819 kb on + strand, within Psest_2292at 2444.819 kb on + strand, within Psest_2292at 2444.819 kb on + strand, within Psest_2292at 2444.819 kb on + strand, within Psest_2292at 2444.819 kb on + strand, within Psest_2292at 2444.819 kb on + strand, within Psest_2292at 2444.819 kb on + strand, within Psest_2292at 2444.819 kb on + strand, within Psest_2292at 2444.819 kb on + strand, within Psest_2292at 2444.819 kb on + strand, within Psest_2292at 2444.819 kb on + strand, within Psest_2292at 2444.819 kb on + strand, within Psest_2292at 2444.819 kb on + strand, within Psest_2292at 2444.820 kb on - strand, within Psest_2292at 2444.820 kb on - strand, within Psest_2292at 2444.820 kb on - strand, within Psest_2292at 2444.820 kb on - strand, within Psest_2292at 2444.820 kb on - strand, within Psest_2292at 2444.820 kb on - strand, within Psest_2292at 2444.820 kb on - strand, within Psest_2292at 2444.823 kb on + strand, within Psest_2292at 2444.824 kb on - strand, within Psest_2292at 2444.824 kb on - strand, within Psest_2292at 2444.824 kb on - strand, within Psest_2292at 2444.824 kb on - strand, within Psest_2292at 2444.824 kb on - strand, within Psest_2292at 2444.824 kb on - strand, within Psest_2292at 2444.824 kb on - strand, within Psest_2292at 2444.824 kb on - strand, within Psest_2292at 2445.038 kb on + strand, within Psest_2293at 2445.288 kb on + strandat 2445.288 kb on + strandat 2445.288 kb on + strandat 2445.288 kb on + strandat 2445.288 kb on + strandat 2445.289 kb on - strandat 2445.289 kb on - strandat 2445.289 kb on - strandat 2445.289 kb on - strandat 2445.289 kb on - strandat 2445.289 kb on - strandat 2445.289 kb on - strandat 2445.289 kb on - strandat 2445.289 kb on - strandat 2445.289 kb on - strandat 2445.289 kb on - strandat 2445.289 kb on - strandat 2445.502 kb on + strand, within Psest_2294at 2445.503 kb on - strand, within Psest_2294at 2445.508 kb on + strand, within Psest_2294at 2445.526 kb on + strand, within Psest_2294at 2445.542 kb on + strand, within Psest_2294at 2445.542 kb on + strand, within Psest_2294at 2445.542 kb on + strand, within Psest_2294at 2445.542 kb on + strand, within Psest_2294at 2445.542 kb on + strand, within Psest_2294at 2445.542 kb on + strand, within Psest_2294at 2445.542 kb on + strand, within Psest_2294at 2445.542 kb on + strand, within Psest_2294at 2445.542 kb on + strand, within Psest_2294at 2445.543 kb on - strand, within Psest_2294at 2445.543 kb on - strand, within Psest_2294at 2445.543 kb on - strand, within Psest_2294at 2445.621 kb on + strand, within Psest_2294at 2445.642 kb on + strand, within Psest_2294at 2445.642 kb on + strand, within Psest_2294at 2445.643 kb on - strand, within Psest_2294at 2445.643 kb on - strand, within Psest_2294at 2445.643 kb on - strand, within Psest_2294at 2445.699 kb on + strand, within Psest_2294at 2445.699 kb on + strand, within Psest_2294at 2445.699 kb on + strand, within Psest_2294at 2445.699 kb on + strand, within Psest_2294at 2445.699 kb on + strand, within Psest_2294at 2445.699 kb on + strand, within Psest_2294at 2445.700 kb on - strand, within Psest_2294at 2445.700 kb on - strand, within Psest_2294at 2445.700 kb on - strand, within Psest_2294at 2445.700 kb on - strand, within Psest_2294at 2445.700 kb on - strand, within Psest_2294at 2445.700 kb on - strand, within Psest_2294at 2445.700 kb on - strand, within Psest_2294at 2445.700 kb on - strand, within Psest_2294at 2445.700 kb on - strand, within Psest_2294at 2445.700 kb on - strand, within Psest_2294at 2445.700 kb on - strand, within Psest_2294at 2445.700 kb on - strand, within Psest_2294at 2445.747 kb on + strand, within Psest_2294at 2445.748 kb on - strand, within Psest_2294at 2445.753 kb on + strand, within Psest_2294at 2445.753 kb on + strand, within Psest_2294at 2445.753 kb on + strand, within Psest_2294at 2445.753 kb on + strand, within Psest_2294at 2445.753 kb on + strand, within Psest_2294at 2445.753 kb on + strand, within Psest_2294at 2445.753 kb on + strand, within Psest_2294at 2445.753 kb on + strand, within Psest_2294at 2445.753 kb on + strand, within Psest_2294at 2445.753 kb on + strand, within Psest_2294at 2445.753 kb on + strand, within Psest_2294at 2445.753 kb on + strand, within Psest_2294at 2445.754 kb on - strand, within Psest_2294at 2445.754 kb on - strand, within Psest_2294at 2445.754 kb on - strand, within Psest_2294at 2445.754 kb on - strand, within Psest_2294at 2445.754 kb on - strand, within Psest_2294at 2445.754 kb on - strand, within Psest_2294at 2445.754 kb on - strand, within Psest_2294at 2445.754 kb on - strand, within Psest_2294at 2445.754 kb on - strand, within Psest_2294at 2445.754 kb on - strand, within Psest_2294at 2445.755 kb on + strand, within Psest_2294at 2445.755 kb on + strand, within Psest_2294at 2445.756 kb on - strand, within Psest_2294at 2445.950 kb on - strand, within Psest_2294at 2445.972 kb on + strand, within Psest_2294at 2445.972 kb on + strand, within Psest_2294at 2445.973 kb on - strand, within Psest_2294at 2445.973 kb on - strand, within Psest_2294at 2446.179 kb on + strand, within Psest_2294at 2446.179 kb on + strand, within Psest_2294at 2446.180 kb on - strand, within Psest_2294at 2446.322 kb on + strand, within Psest_2294at 2446.322 kb on + strand, within Psest_2294at 2446.322 kb on + strand, within Psest_2294at 2446.323 kb on - strand, within Psest_2294at 2446.323 kb on - strand, within Psest_2294at 2446.323 kb on - strand, within Psest_2294at 2446.323 kb on - strand, within Psest_2294at 2446.359 kb on - strand, within Psest_2294at 2446.359 kb on - strand, within Psest_2294at 2446.392 kb on + strand, within Psest_2294at 2446.392 kb on + strand, within Psest_2294at 2446.393 kb on - strand, within Psest_2294at 2446.424 kb on + strandat 2446.425 kb on - strandat 2446.425 kb on - strandat 2446.505 kb on + strandat 2446.505 kb on + strandat 2446.505 kb on + strandat 2446.526 kb on - strandat 2446.529 kb on + strandat 2446.529 kb on + strandat 2446.529 kb on + strandat 2446.529 kb on + strandat 2446.530 kb on - strandat 2446.530 kb on - strandat 2446.530 kb on - strandat 2446.530 kb on - strandat 2446.553 kb on - strandat 2446.564 kb on + strandat 2446.782 kb on + strandat 2446.808 kb on + strandat 2446.832 kb on + strandat 2446.845 kb on - strandat 2446.880 kb on + strandat 2446.881 kb on - strandat 2446.911 kb on + strandat 2446.934 kb on + strandat 2446.993 kb on - strandat 2447.017 kb on - strandat 2447.023 kb on + strandat 2447.023 kb on + strandat 2447.023 kb on + strandat 2447.024 kb on - strandat 2447.024 kb on - strandat 2447.024 kb on - strandat 2447.152 kb on + strandat 2447.152 kb on + strandat 2447.152 kb on + strandat 2447.153 kb on - strandat 2447.153 kb on - strandat 2447.153 kb on - strandat 2447.153 kb on - strandat 2447.295 kb on + strand, within Psest_2295at 2447.295 kb on + strand, within Psest_2295at 2447.295 kb on + strand, within Psest_2295at 2447.295 kb on + strand, within Psest_2295at 2447.296 kb on - strand, within Psest_2295at 2447.296 kb on - strand, within Psest_2295at 2447.296 kb on - strand, within Psest_2295at 2447.298 kb on - strand, within Psest_2295at 2447.298 kb on - strand, within Psest_2295at 2447.298 kb on - strand, within Psest_2295at 2447.298 kb on - strand, within Psest_2295at 2447.298 kb on - strand, within Psest_2295at 2447.424 kb on + strand, within Psest_2295at 2447.433 kb on + strand, within Psest_2295at 2447.435 kb on + strand, within Psest_2295at 2447.435 kb on + strand, within Psest_2295at 2447.435 kb on + strand, within Psest_2295at 2447.436 kb on - strand, within Psest_2295

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml
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2,444,240 + Psest_2292 0.12 -1.2
2,444,240 + Psest_2292 0.12 +0.0
2,444,240 + Psest_2292 0.12 +2.9
2,444,240 + Psest_2292 0.12 +0.2
2,444,240 + Psest_2292 0.12 -0.2
2,444,240 + Psest_2292 0.12 -0.6
2,444,240 + Psest_2292 0.12 -0.8
2,444,241 - Psest_2292 0.12 -0.5
2,444,294 + Psest_2292 0.18 +0.2
2,444,532 + Psest_2292 0.47 -0.4
2,444,693 + Psest_2292 0.66 -1.3
2,444,694 - Psest_2292 0.66 +0.1
2,444,694 - Psest_2292 0.66 -0.1
2,444,694 - Psest_2292 0.66 -0.1
2,444,716 - Psest_2292 0.68 -0.6
2,444,717 + Psest_2292 0.68 -1.5
2,444,717 + Psest_2292 0.68 -0.8
2,444,717 + Psest_2292 0.68 +0.0
2,444,717 + Psest_2292 0.68 -2.7
2,444,718 - Psest_2292 0.69 +0.0
2,444,718 - Psest_2292 0.69 +1.3
2,444,718 - Psest_2292 0.69 -1.1
2,444,718 - Psest_2292 0.69 -0.2
2,444,718 - Psest_2292 0.69 +0.1
2,444,718 - Psest_2292 0.69 -0.1
2,444,718 - Psest_2292 0.69 -0.9
2,444,718 - Psest_2292 0.69 +1.6
2,444,774 + Psest_2292 0.75 +0.5
2,444,774 + Psest_2292 0.75 -0.5
2,444,775 - Psest_2292 0.75 +0.3
2,444,777 + Psest_2292 0.76 +1.2
2,444,778 - Psest_2292 0.76 -0.7
2,444,778 - Psest_2292 0.76 -0.6
2,444,819 + Psest_2292 0.81 -1.5
2,444,819 + Psest_2292 0.81 -1.0
2,444,819 + Psest_2292 0.81 +0.2
2,444,819 + Psest_2292 0.81 +1.3
2,444,819 + Psest_2292 0.81 -1.5
2,444,819 + Psest_2292 0.81 -1.9
2,444,819 + Psest_2292 0.81 -0.4
2,444,819 + Psest_2292 0.81 -1.3
2,444,819 + Psest_2292 0.81 -0.9
2,444,819 + Psest_2292 0.81 -0.1
2,444,819 + Psest_2292 0.81 -0.1
2,444,819 + Psest_2292 0.81 -0.2
2,444,819 + Psest_2292 0.81 +0.0
2,444,819 + Psest_2292 0.81 -0.7
2,444,819 + Psest_2292 0.81 -1.1
2,444,820 - Psest_2292 0.81 -0.4
2,444,820 - Psest_2292 0.81 -0.1
2,444,820 - Psest_2292 0.81 -0.6
2,444,820 - Psest_2292 0.81 -3.4
2,444,820 - Psest_2292 0.81 +0.8
2,444,820 - Psest_2292 0.81 -0.1
2,444,820 - Psest_2292 0.81 -0.9
2,444,823 + Psest_2292 0.81 -2.3
2,444,824 - Psest_2292 0.81 -0.7
2,444,824 - Psest_2292 0.81 +0.9
2,444,824 - Psest_2292 0.81 -0.1
2,444,824 - Psest_2292 0.81 -1.0
2,444,824 - Psest_2292 0.81 -1.5
2,444,824 - Psest_2292 0.81 -0.4
2,444,824 - Psest_2292 0.81 -0.2
2,444,824 - Psest_2292 0.81 +0.2
2,445,038 + Psest_2293 0.37 -1.4
2,445,288 + -1.2
2,445,288 + -0.9
2,445,288 + -1.2
2,445,288 + -2.2
2,445,288 + -0.5
2,445,289 - +0.2
2,445,289 - +0.7
2,445,289 - -0.3
2,445,289 - -0.1
2,445,289 - +0.6
2,445,289 - -0.3
2,445,289 - +1.5
2,445,289 - +0.3
2,445,289 - +1.4
2,445,289 - -0.9
2,445,289 - -3.3
2,445,289 - +0.1
2,445,502 + Psest_2294 0.25 +1.1
2,445,503 - Psest_2294 0.25 +0.0
2,445,508 + Psest_2294 0.25 -2.4
2,445,526 + Psest_2294 0.26 +0.5
2,445,542 + Psest_2294 0.28 -1.4
2,445,542 + Psest_2294 0.28 -0.6
2,445,542 + Psest_2294 0.28 +0.3
2,445,542 + Psest_2294 0.28 -1.6
2,445,542 + Psest_2294 0.28 +0.2
2,445,542 + Psest_2294 0.28 +0.4
2,445,542 + Psest_2294 0.28 -0.3
2,445,542 + Psest_2294 0.28 -0.8
2,445,542 + Psest_2294 0.28 -0.8
2,445,543 - Psest_2294 0.28 +0.2
2,445,543 - Psest_2294 0.28 -0.2
2,445,543 - Psest_2294 0.28 -3.3
2,445,621 + Psest_2294 0.33 +0.9
2,445,642 + Psest_2294 0.35 -0.3
2,445,642 + Psest_2294 0.35 -0.0
2,445,643 - Psest_2294 0.35 -0.3
2,445,643 - Psest_2294 0.35 +0.4
2,445,643 - Psest_2294 0.35 +0.2
2,445,699 + Psest_2294 0.39 +0.3
2,445,699 + Psest_2294 0.39 -0.8
2,445,699 + Psest_2294 0.39 +0.7
2,445,699 + Psest_2294 0.39 +1.0
2,445,699 + Psest_2294 0.39 -0.9
2,445,699 + Psest_2294 0.39 -0.6
2,445,700 - Psest_2294 0.39 -1.0
2,445,700 - Psest_2294 0.39 -1.6
2,445,700 - Psest_2294 0.39 -1.1
2,445,700 - Psest_2294 0.39 -1.0
2,445,700 - Psest_2294 0.39 +0.1
2,445,700 - Psest_2294 0.39 -1.2
2,445,700 - Psest_2294 0.39 -1.9
2,445,700 - Psest_2294 0.39 -0.1
2,445,700 - Psest_2294 0.39 -1.4
2,445,700 - Psest_2294 0.39 +0.6
2,445,700 - Psest_2294 0.39 -0.9
2,445,700 - Psest_2294 0.39 -2.8
2,445,747 + Psest_2294 0.42 +0.4
2,445,748 - Psest_2294 0.43 +0.3
2,445,753 + Psest_2294 0.43 +0.7
2,445,753 + Psest_2294 0.43 -0.9
2,445,753 + Psest_2294 0.43 -0.4
2,445,753 + Psest_2294 0.43 -0.8
2,445,753 + Psest_2294 0.43 -2.0
2,445,753 + Psest_2294 0.43 -0.3
2,445,753 + Psest_2294 0.43 +0.4
2,445,753 + Psest_2294 0.43 +1.3
2,445,753 + Psest_2294 0.43 -1.2
2,445,753 + Psest_2294 0.43 -0.3
2,445,753 + Psest_2294 0.43 +0.9
2,445,753 + Psest_2294 0.43 -1.4
2,445,754 - Psest_2294 0.43 +1.3
2,445,754 - Psest_2294 0.43 -0.8
2,445,754 - Psest_2294 0.43 -0.1
2,445,754 - Psest_2294 0.43 +0.1
2,445,754 - Psest_2294 0.43 -0.1
2,445,754 - Psest_2294 0.43 -1.8
2,445,754 - Psest_2294 0.43 -0.7
2,445,754 - Psest_2294 0.43 -1.1
2,445,754 - Psest_2294 0.43 -0.7
2,445,754 - Psest_2294 0.43 -0.1
2,445,755 + Psest_2294 0.43 -1.0
2,445,755 + Psest_2294 0.43 -0.2
2,445,756 - Psest_2294 0.43 -1.2
2,445,950 - Psest_2294 0.57 +1.2
2,445,972 + Psest_2294 0.59 +0.8
2,445,972 + Psest_2294 0.59 -1.3
2,445,973 - Psest_2294 0.59 -1.4
2,445,973 - Psest_2294 0.59 -0.4
2,446,179 + Psest_2294 0.74 -2.0
2,446,179 + Psest_2294 0.74 -1.6
2,446,180 - Psest_2294 0.74 -2.1
2,446,322 + Psest_2294 0.84 -1.6
2,446,322 + Psest_2294 0.84 -1.2
2,446,322 + Psest_2294 0.84 -2.7
2,446,323 - Psest_2294 0.84 +0.1
2,446,323 - Psest_2294 0.84 -0.5
2,446,323 - Psest_2294 0.84 +1.7
2,446,323 - Psest_2294 0.84 +0.6
2,446,359 - Psest_2294 0.87 +0.3
2,446,359 - Psest_2294 0.87 -0.0
2,446,392 + Psest_2294 0.89 +0.1
2,446,392 + Psest_2294 0.89 -0.6
2,446,393 - Psest_2294 0.89 -0.9
2,446,424 + +1.0
2,446,425 - -0.2
2,446,425 - +0.8
2,446,505 + -0.5
2,446,505 + -0.6
2,446,505 + +0.4
2,446,526 - -0.4
2,446,529 + -0.4
2,446,529 + -0.7
2,446,529 + +1.7
2,446,529 + -0.4
2,446,530 - -1.5
2,446,530 - -0.7
2,446,530 - -0.4
2,446,530 - +0.4
2,446,553 - -0.1
2,446,564 + -0.2
2,446,782 + -1.4
2,446,808 + -1.1
2,446,832 + -2.0
2,446,845 - -0.7
2,446,880 + -0.7
2,446,881 - -0.4
2,446,911 + -0.6
2,446,934 + -1.5
2,446,993 - +0.1
2,447,017 - -0.4
2,447,023 + +1.5
2,447,023 + +0.1
2,447,023 + -0.6
2,447,024 - +0.0
2,447,024 - -0.9
2,447,024 - -0.7
2,447,152 + -1.0
2,447,152 + -2.3
2,447,152 + -0.7
2,447,153 - -0.6
2,447,153 - +1.4
2,447,153 - -1.2
2,447,153 - -0.5
2,447,295 + Psest_2295 0.22 -1.9
2,447,295 + Psest_2295 0.22 -0.0
2,447,295 + Psest_2295 0.22 -1.6
2,447,295 + Psest_2295 0.22 -1.7
2,447,296 - Psest_2295 0.22 -0.1
2,447,296 - Psest_2295 0.22 -1.6
2,447,296 - Psest_2295 0.22 -1.2
2,447,298 - Psest_2295 0.23 -0.8
2,447,298 - Psest_2295 0.23 -0.8
2,447,298 - Psest_2295 0.23 -1.2
2,447,298 - Psest_2295 0.23 -1.4
2,447,298 - Psest_2295 0.23 -2.6
2,447,424 + Psest_2295 0.39 +0.2
2,447,433 + Psest_2295 0.40 +0.9
2,447,435 + Psest_2295 0.41 -0.2
2,447,435 + Psest_2295 0.41 +2.3
2,447,435 + Psest_2295 0.41 -1.1
2,447,436 - Psest_2295 0.41 +0.1

Or see this region's nucleotide sequence