Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0216

Experiment: Def Carbenicillin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0214 and Psest_0215 are separated by 130 nucleotidesPsest_0215 and Psest_0216 are separated by 0 nucleotidesPsest_0216 and Psest_0217 are separated by 166 nucleotides Psest_0214: Psest_0214 - exodeoxyribonuclease V, alpha subunit, at 220,244 to 222,091 _0214 Psest_0215: Psest_0215 - hypothetical protein, at 222,222 to 222,665 _0215 Psest_0216: Psest_0216 - Predicted permeases, at 222,666 to 223,574 _0216 Psest_0217: Psest_0217 - diguanylate cyclase (GGDEF) domain, at 223,741 to 224,955 _0217 Position (kb) 222 223 224Strain fitness (log2 ratio) -2 -1 0 1 2at 221.888 kb on + strand, within Psest_0214at 222.244 kb on + strandat 222.245 kb on - strandat 222.287 kb on + strand, within Psest_0215at 222.342 kb on + strand, within Psest_0215at 222.342 kb on + strand, within Psest_0215at 222.343 kb on - strand, within Psest_0215at 222.343 kb on - strand, within Psest_0215at 222.343 kb on - strand, within Psest_0215at 222.345 kb on + strand, within Psest_0215at 222.345 kb on + strand, within Psest_0215at 222.345 kb on + strand, within Psest_0215at 222.346 kb on - strand, within Psest_0215at 222.346 kb on - strand, within Psest_0215at 222.346 kb on - strand, within Psest_0215at 222.346 kb on - strand, within Psest_0215at 222.346 kb on - strand, within Psest_0215at 222.346 kb on - strand, within Psest_0215at 222.346 kb on - strand, within Psest_0215at 222.346 kb on - strand, within Psest_0215at 222.346 kb on - strand, within Psest_0215at 222.382 kb on - strand, within Psest_0215at 222.484 kb on + strand, within Psest_0215at 222.501 kb on + strand, within Psest_0215at 222.781 kb on + strand, within Psest_0216at 222.781 kb on + strandat 222.781 kb on + strand, within Psest_0216at 222.782 kb on - strand, within Psest_0216at 222.937 kb on - strand, within Psest_0216at 223.255 kb on + strand, within Psest_0216at 223.255 kb on + strand, within Psest_0216at 223.255 kb on + strand, within Psest_0216at 223.255 kb on + strand, within Psest_0216at 223.256 kb on - strand, within Psest_0216at 223.256 kb on - strand, within Psest_0216at 223.424 kb on + strand, within Psest_0216at 223.457 kb on - strand, within Psest_0216at 223.457 kb on - strand, within Psest_0216at 223.457 kb on - strand, within Psest_0216at 223.457 kb on - strand, within Psest_0216at 223.457 kb on - strand, within Psest_0216at 223.519 kb on + strandat 223.588 kb on + strandat 223.589 kb on - strandat 223.589 kb on - strandat 223.589 kb on - strandat 223.656 kb on + strandat 223.656 kb on + strandat 223.657 kb on - strandat 223.657 kb on - strandat 223.657 kb on - strandat 223.657 kb on - strandat 223.657 kb on - strandat 223.749 kb on + strandat 223.749 kb on + strandat 223.749 kb on + strandat 223.749 kb on + strandat 223.749 kb on + strandat 223.749 kb on + strandat 223.749 kb on + strandat 223.749 kb on + strandat 223.749 kb on + strandat 223.749 kb on + strandat 223.750 kb on - strandat 223.750 kb on - strandat 223.750 kb on - strandat 223.750 kb on - strandat 223.750 kb on - strandat 223.750 kb on - strandat 223.750 kb on - strandat 223.750 kb on - strandat 223.759 kb on + strandat 223.759 kb on + strandat 223.933 kb on + strand, within Psest_0217at 223.940 kb on - strand, within Psest_0217at 224.050 kb on + strand, within Psest_0217at 224.050 kb on + strand, within Psest_0217at 224.050 kb on + strand, within Psest_0217at 224.051 kb on - strand, within Psest_0217at 224.051 kb on - strand, within Psest_0217at 224.094 kb on - strand, within Psest_0217at 224.150 kb on + strand, within Psest_0217at 224.151 kb on - strand, within Psest_0217at 224.332 kb on + strand, within Psest_0217at 224.332 kb on + strand, within Psest_0217at 224.332 kb on + strand, within Psest_0217at 224.332 kb on + strand, within Psest_0217at 224.332 kb on + strand, within Psest_0217at 224.332 kb on + strand, within Psest_0217at 224.332 kb on + strand, within Psest_0217at 224.332 kb on + strand, within Psest_0217at 224.333 kb on - strand, within Psest_0217at 224.333 kb on - strand, within Psest_0217at 224.333 kb on - strand, within Psest_0217at 224.333 kb on - strand, within Psest_0217at 224.333 kb on - strand, within Psest_0217at 224.335 kb on + strand, within Psest_0217at 224.335 kb on + strand, within Psest_0217at 224.335 kb on + strand, within Psest_0217at 224.335 kb on + strand, within Psest_0217at 224.335 kb on + strand, within Psest_0217at 224.335 kb on + strand, within Psest_0217at 224.335 kb on + strand, within Psest_0217at 224.336 kb on - strand, within Psest_0217at 224.336 kb on - strand, within Psest_0217at 224.372 kb on - strand, within Psest_0217at 224.372 kb on - strand, within Psest_0217at 224.384 kb on - strand, within Psest_0217at 224.566 kb on + strand, within Psest_0217at 224.566 kb on + strand, within Psest_0217at 224.566 kb on + strand, within Psest_0217at 224.566 kb on + strand, within Psest_0217at 224.566 kb on + strand, within Psest_0217at 224.566 kb on + strand, within Psest_0217at 224.567 kb on - strand, within Psest_0217at 224.567 kb on - strand, within Psest_0217at 224.567 kb on - strand, within Psest_0217at 224.567 kb on - strand, within Psest_0217at 224.567 kb on - strand, within Psest_0217at 224.567 kb on - strand, within Psest_0217at 224.567 kb on - strand, within Psest_0217

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml
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221,888 + Psest_0214 0.89 +1.8
222,244 + -0.7
222,245 - +0.3
222,287 + Psest_0215 0.15 -0.1
222,342 + Psest_0215 0.27 +1.5
222,342 + Psest_0215 0.27 +0.8
222,343 - Psest_0215 0.27 +0.0
222,343 - Psest_0215 0.27 -0.6
222,343 - Psest_0215 0.27 +1.8
222,345 + Psest_0215 0.28 +0.0
222,345 + Psest_0215 0.28 -0.5
222,345 + Psest_0215 0.28 +0.0
222,346 - Psest_0215 0.28 +0.2
222,346 - Psest_0215 0.28 -1.4
222,346 - Psest_0215 0.28 -1.5
222,346 - Psest_0215 0.28 +0.0
222,346 - Psest_0215 0.28 +0.5
222,346 - Psest_0215 0.28 +0.1
222,346 - Psest_0215 0.28 +0.8
222,346 - Psest_0215 0.28 -0.2
222,346 - Psest_0215 0.28 -0.8
222,382 - Psest_0215 0.36 -0.6
222,484 + Psest_0215 0.59 -1.4
222,501 + Psest_0215 0.63 -1.0
222,781 + Psest_0216 0.13 -0.4
222,781 + +1.8
222,781 + Psest_0216 0.13 +1.2
222,782 - Psest_0216 0.13 -0.2
222,937 - Psest_0216 0.30 -1.1
223,255 + Psest_0216 0.65 -2.4
223,255 + Psest_0216 0.65 -1.4
223,255 + Psest_0216 0.65 -0.8
223,255 + Psest_0216 0.65 -2.6
223,256 - Psest_0216 0.65 -1.0
223,256 - Psest_0216 0.65 +0.8
223,424 + Psest_0216 0.83 +0.5
223,457 - Psest_0216 0.87 +0.1
223,457 - Psest_0216 0.87 -1.3
223,457 - Psest_0216 0.87 -2.5
223,457 - Psest_0216 0.87 +0.6
223,457 - Psest_0216 0.87 -0.5
223,519 + -1.5
223,588 + +0.2
223,589 - -1.4
223,589 - +0.0
223,589 - +1.4
223,656 + -0.8
223,656 + -0.5
223,657 - -0.2
223,657 - +0.2
223,657 - +1.5
223,657 - +1.6
223,657 - -0.5
223,749 + +0.7
223,749 + +0.4
223,749 + -0.6
223,749 + -1.7
223,749 + +0.6
223,749 + +1.3
223,749 + +1.3
223,749 + +2.2
223,749 + +0.2
223,749 + -0.0
223,750 - +1.8
223,750 - +0.3
223,750 - +0.1
223,750 - +1.0
223,750 - -0.4
223,750 - -0.4
223,750 - -0.7
223,750 - +1.1
223,759 + -0.3
223,759 + -1.9
223,933 + Psest_0217 0.16 -0.8
223,940 - Psest_0217 0.16 -0.3
224,050 + Psest_0217 0.25 -0.4
224,050 + Psest_0217 0.25 -1.5
224,050 + Psest_0217 0.25 -0.3
224,051 - Psest_0217 0.26 -0.9
224,051 - Psest_0217 0.26 -1.4
224,094 - Psest_0217 0.29 +0.3
224,150 + Psest_0217 0.34 -1.0
224,151 - Psest_0217 0.34 +1.4
224,332 + Psest_0217 0.49 -0.6
224,332 + Psest_0217 0.49 -2.3
224,332 + Psest_0217 0.49 +0.1
224,332 + Psest_0217 0.49 -0.4
224,332 + Psest_0217 0.49 +0.7
224,332 + Psest_0217 0.49 -0.1
224,332 + Psest_0217 0.49 -1.1
224,332 + Psest_0217 0.49 +1.2
224,333 - Psest_0217 0.49 +0.1
224,333 - Psest_0217 0.49 -0.4
224,333 - Psest_0217 0.49 +1.6
224,333 - Psest_0217 0.49 -0.0
224,333 - Psest_0217 0.49 -0.0
224,335 + Psest_0217 0.49 -2.0
224,335 + Psest_0217 0.49 -0.1
224,335 + Psest_0217 0.49 -2.3
224,335 + Psest_0217 0.49 +0.7
224,335 + Psest_0217 0.49 +0.1
224,335 + Psest_0217 0.49 +2.0
224,335 + Psest_0217 0.49 -0.1
224,336 - Psest_0217 0.49 +1.0
224,336 - Psest_0217 0.49 +0.7
224,372 - Psest_0217 0.52 -0.9
224,372 - Psest_0217 0.52 +1.2
224,384 - Psest_0217 0.53 +1.2
224,566 + Psest_0217 0.68 +1.2
224,566 + Psest_0217 0.68 -1.1
224,566 + Psest_0217 0.68 -0.0
224,566 + Psest_0217 0.68 +0.8
224,566 + Psest_0217 0.68 -1.8
224,566 + Psest_0217 0.68 +0.8
224,567 - Psest_0217 0.68 -1.4
224,567 - Psest_0217 0.68 -0.3
224,567 - Psest_0217 0.68 +0.6
224,567 - Psest_0217 0.68 -0.4
224,567 - Psest_0217 0.68 -1.5
224,567 - Psest_0217 0.68 -0.0
224,567 - Psest_0217 0.68 +1.2

Or see this region's nucleotide sequence