Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2188 and Psest_2189 are separated by 157 nucleotides Psest_2189 and Psest_2190 are separated by 388 nucleotides Psest_2190 and Psest_2191 are separated by 127 nucleotides
Psest_2188: Psest_2188 - AraC-type DNA-binding domain-containing proteins, at 2,345,796 to 2,346,731
_2188
Psest_2189: Psest_2189 - DASH complex subunit Dad3., at 2,346,889 to 2,347,119
_2189
Psest_2190: Psest_2190 - hypothetical protein, at 2,347,508 to 2,347,720
_2190
Psest_2191: Psest_2191 - phage/plasmid replication protein, gene II/X family, at 2,347,848 to 2,349,110
_2191
Position (kb)
2346
2347
2348 Strain fitness (log2 ratio)
-2
-1
0
1 at 2345.949 kb on + strand, within Psest_2188 at 2345.949 kb on + strand, within Psest_2188 at 2345.949 kb on + strand, within Psest_2188 at 2345.949 kb on + strand, within Psest_2188 at 2345.949 kb on + strand, within Psest_2188 at 2345.950 kb on - strand, within Psest_2188 at 2345.953 kb on + strand, within Psest_2188 at 2345.953 kb on + strand, within Psest_2188 at 2345.953 kb on + strand, within Psest_2188 at 2345.953 kb on + strand, within Psest_2188 at 2345.953 kb on + strand, within Psest_2188 at 2345.953 kb on + strand, within Psest_2188 at 2345.954 kb on - strand, within Psest_2188 at 2346.054 kb on + strand, within Psest_2188 at 2346.055 kb on - strand, within Psest_2188 at 2346.295 kb on + strand, within Psest_2188 at 2346.295 kb on + strand, within Psest_2188 at 2346.295 kb on + strand, within Psest_2188 at 2346.296 kb on - strand, within Psest_2188 at 2346.296 kb on - strand, within Psest_2188 at 2346.328 kb on + strand, within Psest_2188 at 2346.424 kb on - strand, within Psest_2188 at 2346.546 kb on + strand, within Psest_2188 at 2346.603 kb on + strand, within Psest_2188 at 2346.603 kb on + strand, within Psest_2188 at 2346.603 kb on + strand, within Psest_2188 at 2346.604 kb on - strand, within Psest_2188 at 2346.604 kb on - strand, within Psest_2188 at 2346.604 kb on - strand, within Psest_2188 at 2346.681 kb on - strand at 2346.746 kb on + strand at 2346.798 kb on - strand at 2346.802 kb on + strand at 2346.802 kb on + strand at 2346.803 kb on - strand at 2346.828 kb on - strand at 2346.828 kb on - strand at 2346.828 kb on - strand at 2346.828 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 2,345,949 + Psest_2188 0.16 +0.4 2,345,949 + Psest_2188 0.16 +1.0 2,345,949 + Psest_2188 0.16 -2.3 2,345,949 + Psest_2188 0.16 +0.5 2,345,949 + Psest_2188 0.16 +0.2 2,345,950 - Psest_2188 0.16 +0.9 2,345,953 + Psest_2188 0.17 -2.4 2,345,953 + Psest_2188 0.17 -0.2 2,345,953 + Psest_2188 0.17 -0.0 2,345,953 + Psest_2188 0.17 +0.3 2,345,953 + Psest_2188 0.17 +1.2 2,345,953 + Psest_2188 0.17 -0.6 2,345,954 - Psest_2188 0.17 -0.8 2,346,054 + Psest_2188 0.28 +0.3 2,346,055 - Psest_2188 0.28 +0.1 2,346,295 + Psest_2188 0.53 +0.1 2,346,295 + Psest_2188 0.53 -1.1 2,346,295 + Psest_2188 0.53 -0.8 2,346,296 - Psest_2188 0.53 -1.1 2,346,296 - Psest_2188 0.53 -0.9 2,346,328 + Psest_2188 0.57 -1.7 2,346,424 - Psest_2188 0.67 -0.5 2,346,546 + Psest_2188 0.80 -0.5 2,346,603 + Psest_2188 0.86 +1.6 2,346,603 + Psest_2188 0.86 -0.8 2,346,603 + Psest_2188 0.86 +0.9 2,346,604 - Psest_2188 0.86 +0.5 2,346,604 - Psest_2188 0.86 -1.8 2,346,604 - Psest_2188 0.86 +0.4 2,346,681 - +1.4 2,346,746 + +1.5 2,346,798 - +0.5 2,346,802 + +0.5 2,346,802 + +0.5 2,346,803 - +0.8 2,346,828 - -0.2 2,346,828 - +1.1 2,346,828 - -0.7 2,346,828 - -0.1
Or see this region's nucleotide sequence