Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0212

Experiment: Def Carbenicillin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0211 and Psest_0212 are separated by 226 nucleotidesPsest_0212 and Psest_0213 overlap by 4 nucleotides Psest_0211: Psest_0211 - hypothetical protein, at 212,206 to 213,102 _0211 Psest_0212: Psest_0212 - exodeoxyribonuclease V, gamma subunit, at 213,329 to 216,628 _0212 Psest_0213: Psest_0213 - exodeoxyribonuclease V, beta subunit, at 216,625 to 220,173 _0213 Position (kb) 213 214 215 216 217Strain fitness (log2 ratio) -2 -1 0 1 2 3at 212.395 kb on + strand, within Psest_0211at 212.395 kb on + strand, within Psest_0211at 212.395 kb on + strand, within Psest_0211at 212.395 kb on + strand, within Psest_0211at 212.395 kb on + strand, within Psest_0211at 212.395 kb on + strand, within Psest_0211at 212.395 kb on + strand, within Psest_0211at 212.395 kb on + strand, within Psest_0211at 212.395 kb on + strand, within Psest_0211at 212.395 kb on + strand, within Psest_0211at 212.396 kb on - strand, within Psest_0211at 212.396 kb on - strand, within Psest_0211at 212.396 kb on - strand, within Psest_0211at 212.396 kb on - strand, within Psest_0211at 212.407 kb on + strand, within Psest_0211at 212.407 kb on + strand, within Psest_0211at 212.407 kb on + strand, within Psest_0211at 212.407 kb on + strand, within Psest_0211at 212.407 kb on + strand, within Psest_0211at 212.408 kb on - strand, within Psest_0211at 212.471 kb on + strand, within Psest_0211at 212.471 kb on + strand, within Psest_0211at 212.471 kb on + strand, within Psest_0211at 212.471 kb on + strand, within Psest_0211at 212.471 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.609 kb on + strand, within Psest_0211at 212.696 kb on + strand, within Psest_0211at 212.696 kb on + strand, within Psest_0211at 212.696 kb on + strand, within Psest_0211at 212.696 kb on + strand, within Psest_0211at 212.696 kb on + strand, within Psest_0211at 212.697 kb on - strand, within Psest_0211at 212.697 kb on - strand, within Psest_0211at 212.697 kb on - strand, within Psest_0211at 212.858 kb on + strand, within Psest_0211at 212.858 kb on + strand, within Psest_0211at 212.858 kb on + strand, within Psest_0211at 212.858 kb on + strand, within Psest_0211at 212.858 kb on + strand, within Psest_0211at 212.858 kb on + strand, within Psest_0211at 212.858 kb on + strand, within Psest_0211at 212.858 kb on + strand, within Psest_0211at 212.858 kb on + strand, within Psest_0211at 212.858 kb on + strand, within Psest_0211at 212.858 kb on + strand, within Psest_0211at 212.858 kb on + strand, within Psest_0211at 212.859 kb on - strand, within Psest_0211at 212.859 kb on - strand, within Psest_0211at 212.859 kb on - strand, within Psest_0211at 212.859 kb on - strand, within Psest_0211at 212.859 kb on - strand, within Psest_0211at 212.859 kb on - strand, within Psest_0211at 212.859 kb on - strand, within Psest_0211at 212.859 kb on - strand, within Psest_0211at 212.859 kb on - strand, within Psest_0211at 212.859 kb on - strand, within Psest_0211at 212.861 kb on + strand, within Psest_0211at 213.064 kb on + strandat 213.064 kb on + strandat 213.064 kb on + strandat 213.065 kb on - strandat 213.065 kb on - strandat 213.065 kb on - strandat 213.065 kb on - strandat 213.132 kb on + strandat 213.158 kb on + strandat 213.159 kb on - strandat 213.159 kb on - strandat 213.174 kb on - strandat 213.174 kb on - strandat 213.174 kb on - strandat 213.180 kb on + strandat 213.301 kb on + strandat 213.302 kb on - strandat 213.510 kb on + strandat 214.103 kb on + strand, within Psest_0212at 214.214 kb on + strand, within Psest_0212at 214.214 kb on + strand, within Psest_0212at 214.372 kb on - strand, within Psest_0212at 214.524 kb on - strand, within Psest_0212

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml
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212,395 + Psest_0211 0.21 -1.9
212,395 + Psest_0211 0.21 -0.7
212,395 + Psest_0211 0.21 -1.2
212,395 + Psest_0211 0.21 +0.5
212,395 + Psest_0211 0.21 -1.1
212,395 + Psest_0211 0.21 +0.8
212,395 + Psest_0211 0.21 -0.1
212,395 + Psest_0211 0.21 +0.1
212,395 + Psest_0211 0.21 -1.5
212,395 + Psest_0211 0.21 -0.5
212,396 - Psest_0211 0.21 +2.2
212,396 - Psest_0211 0.21 -1.6
212,396 - Psest_0211 0.21 +0.2
212,396 - Psest_0211 0.21 -1.0
212,407 + Psest_0211 0.22 +1.7
212,407 + Psest_0211 0.22 +0.5
212,407 + Psest_0211 0.22 -0.4
212,407 + Psest_0211 0.22 -0.8
212,407 + Psest_0211 0.22 +0.4
212,408 - Psest_0211 0.23 +1.0
212,471 + Psest_0211 0.30 +0.9
212,471 + Psest_0211 0.30 +0.7
212,471 + Psest_0211 0.30 +0.7
212,471 + Psest_0211 0.30 -0.2
212,471 + Psest_0211 0.30 +0.9
212,606 + Psest_0211 0.45 -1.1
212,606 + Psest_0211 0.45 +1.1
212,606 + Psest_0211 0.45 +0.7
212,606 + Psest_0211 0.45 -0.0
212,606 + Psest_0211 0.45 +0.6
212,606 + Psest_0211 0.45 -0.2
212,606 + Psest_0211 0.45 +0.5
212,606 + Psest_0211 0.45 +1.2
212,606 + Psest_0211 0.45 +0.5
212,606 + Psest_0211 0.45 +2.0
212,606 + Psest_0211 0.45 -1.3
212,606 + Psest_0211 0.45 +1.0
212,606 + Psest_0211 0.45 +0.2
212,606 + Psest_0211 0.45 +0.2
212,606 + Psest_0211 0.45 +1.8
212,607 - Psest_0211 0.45 -1.7
212,607 - Psest_0211 0.45 +1.5
212,607 - Psest_0211 0.45 -0.1
212,607 - Psest_0211 0.45 +0.5
212,607 - Psest_0211 0.45 -0.4
212,607 - Psest_0211 0.45 +0.5
212,607 - Psest_0211 0.45 +0.0
212,607 - Psest_0211 0.45 -1.3
212,607 - Psest_0211 0.45 -0.8
212,607 - Psest_0211 0.45 -0.7
212,607 - Psest_0211 0.45 +0.6
212,607 - Psest_0211 0.45 -0.7
212,607 - Psest_0211 0.45 +0.5
212,607 - Psest_0211 0.45 +0.1
212,609 + Psest_0211 0.45 +1.1
212,696 + Psest_0211 0.55 -0.4
212,696 + Psest_0211 0.55 -0.1
212,696 + Psest_0211 0.55 -1.8
212,696 + Psest_0211 0.55 -0.3
212,696 + Psest_0211 0.55 -0.2
212,697 - Psest_0211 0.55 -1.2
212,697 - Psest_0211 0.55 -0.4
212,697 - Psest_0211 0.55 -0.0
212,858 + Psest_0211 0.73 +0.3
212,858 + Psest_0211 0.73 +3.1
212,858 + Psest_0211 0.73 -0.2
212,858 + Psest_0211 0.73 +0.5
212,858 + Psest_0211 0.73 +0.4
212,858 + Psest_0211 0.73 +1.1
212,858 + Psest_0211 0.73 -0.2
212,858 + Psest_0211 0.73 +0.5
212,858 + Psest_0211 0.73 +0.1
212,858 + Psest_0211 0.73 +0.4
212,858 + Psest_0211 0.73 +0.3
212,858 + Psest_0211 0.73 +0.6
212,859 - Psest_0211 0.73 -0.3
212,859 - Psest_0211 0.73 -2.3
212,859 - Psest_0211 0.73 +0.3
212,859 - Psest_0211 0.73 -0.7
212,859 - Psest_0211 0.73 +0.8
212,859 - Psest_0211 0.73 -0.1
212,859 - Psest_0211 0.73 -2.1
212,859 - Psest_0211 0.73 +0.2
212,859 - Psest_0211 0.73 +0.1
212,859 - Psest_0211 0.73 -0.5
212,861 + Psest_0211 0.73 -1.2
213,064 + -0.1
213,064 + -2.3
213,064 + -0.0
213,065 - -0.4
213,065 - +0.2
213,065 - -0.2
213,065 - +0.8
213,132 + +0.7
213,158 + -0.2
213,159 - -0.1
213,159 - +0.7
213,174 - -0.2
213,174 - -1.2
213,174 - -0.5
213,180 + +1.4
213,301 + -0.7
213,302 - -0.8
213,510 + -0.0
214,103 + Psest_0212 0.23 -0.9
214,214 + Psest_0212 0.27 +0.5
214,214 + Psest_0212 0.27 +0.5
214,372 - Psest_0212 0.32 +1.8
214,524 - Psest_0212 0.36 +1.8

Or see this region's nucleotide sequence